🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Gonzalo Benegas

University of California, Berkeley

ORCID: 0000-0002-6639-4394
Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile
1.0Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Robust and annotation-free analysis of alternative splicing across diverse cell types in mice

eLife(2022)10.7554/elife.73520
Top 24%
0.852DataRank
Top 24%23 citations

Jonathan Fischer, Yun S. Song, Gonzalo Benegas

Papers

Driven by 10 papers — median percentile 55. Top paper: “Robust and annotation-free analysis of alternative splicing across diverse cell types in mice”.

Robust and annotation-free analysis of alternative splicing across diverse cell types in mice

eLife(2022)10.7554/elife.73520
Top 24%
0.852DataRank
Top 24%23 citations

Jonathan Fischer, Yun S. Song, Gonzalo Benegas

Robust and annotation-free analysis of alternative splicing across diverse cell types in mice

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.27.441683
Top 67%
0.173DataRank
Top 67%1 citations

Jonathan Fischer, Yun S. Song, Gonzalo Benegas

DNA language models are powerful predictors of genome-wide variant effects

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2311219120
N/A
0DataRank · unranked
135 citations

Sanjit Singh Batra, Yun S. Song, Gonzalo Benegas

GPN-MSA: an alignment-based DNA language model for genome-wide variant effect prediction

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.10.561776
N/A
0DataRank · unranked
29 citations

Carlos Albors, Alan J. Aw, Chengzhong Ye, Yun S. Song, Gonzalo Benegas

choros: correction of sequence-based biases for accurate quantification of ribosome profiling data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.21.529452
N/A
0DataRank · unranked
5 citations

Robert J. Tunney, Gonzalo Benegas, Edward W. J. Wallace, Liana F. Lareau, Amanda Mok

Genomic language models: opportunities and challenges

Trends in Genetics(2025)10.1016/j.tig.2024.11.013
N/A
0DataRank · unranked
94 citations

Chengzhong Ye, Carlos Albors, Jianan Canal Li, Yun S. Song, Gonzalo Benegas

Benchmarking DNA Sequence Models for Causal Regulatory Variant Prediction in Human Genetics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.02.11.637758
N/A
0DataRank · unranked
17 citations

Gökçen Eraslan, Yun S. Song, Gonzalo Benegas

Predicting functional constraints across evolutionary timescales with phylogeny-informed genomic language models

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.21.677619
N/A
0DataRank · unranked
6 citations

Gonzalo Benegas, Carlos Albors, Jianan Canal Li, Sebastian Prillo, Peter D. Fields +3 more

A Phylogenetic Approach to Genomic Language Modeling

arXiv (Cornell University)(2025)10.48550/arxiv.2503.03773
N/A
0DataRank · unranked
0 citations

Jianan Canal Li, Gonzalo Benegas, Chengzhong Ye, Yun S. Song, Carlos Albors

DNA language models are powerful predictors of genome-wide variant effects

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.22.504706
N/A
0DataRank · unranked
26 citations

Sanjit Singh Batra, Yun S. Song, Gonzalo Benegas