🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Robert Serafin

University of Washington

ORCID: 0000-0002-6646-353X

Also affiliated with University of Illinois Chicago, University of Chicago

Computer ScienceBiochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 15 papers. Top paper: “FalseColor-Python: A rapid intensity-leveling and digital-staining package for fluorescence-based slide-free digital pathology”.

FalseColor-Python: A rapid intensity-leveling and digital-staining package for fluorescence-based slide-free digital pathology

PLoS ONE(2020)10.1371/journal.pone.0233198

N/A

0DataRank · unranked

58 citations

Weisi Xie, Adam K. Glaser, Jonathan Liu, Robert Serafin

A hybrid open-top light-sheet microscope for multi-scale imaging of cleared tissues

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.06.081745

N/A

0DataRank · unranked

8 citations

Kevin W. Bishop, Lindsey A. Barner, Etsuo A. Susaki, Shimpei I. Kubota, Gan Gao +32 more

FalseColor-Python: a rapid intensity-leveling and digital-staining package for fluorescence-based slide-free digital pathology

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.03.074955

N/A

0DataRank · unranked

4 citations

Weisi Xie, Adam K. Glaser, Jonathan Liu, Robert Serafin

A hybrid open-top light-sheet microscope for multi-scale imaging of cleared tissues

Research Square(2021)10.21203/rs.3.rs-860253/v1

N/A

0DataRank · unranked

10 citations

Kevin W. Bishop, Lindsey A. Barner, Etsuo A. Susaki, Shimpei I. Kubota, Gan Gao +32 more

Prostate cancer risk stratification via non-destructive 3D pathology with annotation-free gland segmentation and analysis

medRxiv(2021)10.1101/2021.08.30.21262847

N/A

0DataRank · unranked

3 citations

Nicholas P. Reder, Can Koyuncu, Patrick Leo, Sarah Hawley, Hanhui Huang +18 more

A hybrid open-top light-sheet microscope for versatile multi-scale imaging of cleared tissues

Nature Methods(2022)10.1038/s41592-022-01468-5

N/A

0DataRank · unranked

178 citations

Kevin W. Bishop, Lindsey A. Barner, Etsuo A. Susaki, Shimpei I. Kubota, Gan Gao +32 more

Non-destructive 3D pathology with analysis of nuclear features for prostate cancer risk assessment

Research Square(2022)10.21203/rs.3.rs-1979367/v1

N/A

0DataRank · unranked

0 citations

Can Konyuncu, Weisi Xie, Hongyi Huang, Adam K. Glaser, Nicholas P. Reder +5 more

Nondestructive 3D pathology with analysis of nuclear features for prostate cancer risk assessment

The Journal of Pathology(2023)10.1002/path.6090

N/A

0DataRank · unranked

43 citations

Can Koyuncu, Weisi Xie, Hongyi Huang, Adam K. Glaser, Nicholas P. Reder +5 more

Comprehensive Surface Histology of Fresh Resection Margins With Rapid Open-Top Light-Sheet (OTLS) Microscopy

IEEE Transactions on Biomedical Engineering(2023)10.1109/tbme.2023.3237267

N/A

0DataRank · unranked

19 citations

Dominie Miyasato, Lindsey A. Barner, Robert Serafin, Kevin W. Bishop, Weisi Xie +5 more

Visual Assessment of 2-Dimensional Levels Within 3-Dimensional Pathology Data Sets of Prostate Needle Biopsies Reveals Substantial Spatial Heterogeneity

Laboratory Investigation(2023)10.1016/j.labinv.2023.100265

N/A

0DataRank · unranked

11 citations

Andrew Janowczyk, Xavier Farré, Tilak Pathak, Tuomas Mirtti, Pedro L. Fernández +10 more

An end-to-end workflow for non-destructive 3D pathology

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.03.551845

N/A

0DataRank · unranked

7 citations

Lindsey A. Barner, Qinghua Han, Elena Baraznenok, Lydia Lan, Chetan Poudel +13 more

Weakly Supervised AI for Efficient Analysis of 3D Pathology Samples

arXiv (Cornell University)(2023)10.48550/arxiv.2307.14907

N/A

0DataRank · unranked

4 citations

Mane Williams, Drew F. K. Williamson, Guillaume Jaume, J. Andrew Zhang, Bowen Chen +6 more

Analysis of 3D pathology samples using weakly supervised AI

Cell(2024)10.1016/j.cell.2024.03.035

N/A

0DataRank · unranked

98 citations

Mane Williams, Drew F. K. Williamson, Sarah S. L. Chow, Guillaume Jaume, Gan Gao +14 more

An end-to-end workflow for nondestructive 3D pathology

Nature Protocols(2024)10.1038/s41596-023-00934-4

N/A

0DataRank · unranked

33 citations

Lindsey A. Barner, Qinghua Han, Elena Baraznenok, Lydia Lan, Chetan Poudel +13 more

Axially swept open-top light-sheet microscopy for densely labeled clinical specimens

Optics Letters(2024)10.1364/ol.521591

N/A

0DataRank · unranked

9 citations

Lindsey A. Barner, Elena Baraznenok, Lydia Lan, Chetan Poudel, David Brenes +6 more