Lingyang Zhu

MedicineBiochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 26 papers. Top paper: “Structural determinants of macrocyclization in substrate-controlled lanthipeptide biosynthetic pathways”.

Structural determinants of macrocyclization in substrate-controlled lanthipeptide biosynthetic pathways

Chemical Science(2020)10.1039/d0sc01651a

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0DataRank · unranked

38 citations

Lingyang Zhu, Jeella Z. Acedo, Weixin Tang, Wilfred A. van der Donk, Silvia C. Bobeica

Inhibition of [FeFe]-hydrogenase by formaldehyde: proposed mechanism and reactivity of FeFe alkyl complexes

Chemical Science(2021)10.1039/d1sc05803g

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12 citations

Toby J. Woods, Lingyang Zhu, Thomas B. Rauchfuss, Fanjun Zhang

A scalable platform to discover antimicrobials of ribosomal origin

Nature Communications(2022)10.1038/s41467-022-33890-w

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0DataRank · unranked

105 citations

Chengyou Shi, Alexander J. Battiste, Sara M. Eslami, Sangeetha Ramesh, Max A. Simon +14 more

Structure and mechanism for iterative amide N -methylation in the biosynthesis of channel-forming peptide cytotoxins

Proceedings of the National Academy of Sciences(2022)10.1073/pnas.2116578119

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7 citations

Agneya Bhushan, Reyvin M. Reyes, Lingyang Zhu, Jörn Piel, Satish K. Nair +1 more

Macrocyclization and Backbone Rearrangement During RiPP Biosynthesis by a SAM-Dependent Domain-of-Unknown-Function 692

ACS Central Science(2023)10.1021/acscentsci.3c00160

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56 citations

Lingyang Zhu, Jeff Y. Chen, Chi P. Ting, Wilfred A. van der Donk, Richard Ayikpoe

Genome mining unveils a class of ribosomal peptides with two amino termini

Nature Communications(2023)10.1038/s41467-023-37287-1

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42 citations

Shravan R. Dommaraju, Chunshuai Huang, Haiyang Cui, Yuwei Pan, Marko Nešić +5 more

Peptidase Activation by a Leader Peptide-Bound RiPP Recognition Element

Biochemistry(2023)10.1021/acs.biochem.2c00700

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40 citations

Mayuresh G. Gadgil, Adam J. DiCaprio, Susanna E. Barrett, Bryce Kille, Yuanyuan Si +3 more

A Novel Pathway for Biosynthesis of the Herbicidal Phosphonate Natural Product Phosphonothrixin Is Widespread in Actinobacteria

Journal of Bacteriology(2023)10.1128/jb.00485-22

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12 citations

Ryuichi Hirota, Michelle N. Goettge, Jerry Cui, David T. Krist, Lingyang Zhu +5 more

Complete Biochemical Characterization of Pantaphos Biosynthesis Highlights an Unusual Role for a SAM‐Dependent Methyltransferase

Angewandte Chemie International Edition(2023)10.1002/anie.202317262

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10 citations

Angelica D. Caserio, Lingyang Zhu, William W. Metcalf, Alexander L. A. Polidore

Core-dependent post-translational modifications guide the biosynthesis of a new class of hypermodified peptides

Nature Communications(2023)10.1038/s41467-023-43604-5

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9 citations

Lingyang Zhu, Satish K. Nair, Zeng‐Fei Pei

Complete Biochemical Characterization of Pantaphos Biosynthesis Highlights an Unusual Role for a SAM‐Dependent Methyltransferase

Angewandte Chemie(2023)10.1002/ange.202317262

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1 citations

Angelica D. Caserio, Lingyang Zhu, William W. Metcalf, Alexander L. A. Polidore

Biosynthesis of macrocyclic peptides with C-terminal β-amino-α-keto acid groups by three different metalloenzymes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.30.564719

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2 citations

Lingyang Zhu, Danielle L. Gray, Toby J. Woods, Chandrashekhar Padhi, Kristen M. Flatt +3 more

A remarkable transformation catalyzed by a domain-of-unknown-function 692 during the biosynthesis of a new RiPP natural product

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.06.527370

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0DataRank · unranked

0 citations

Lingyang Zhu, Jeff Y. Chen, Chi P. Ting, Wilfred A. van der Donk, Richard Ayikpoe

Genome mining unveils a class of ribosomal peptides with two amino termini

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.08.531785

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0DataRank · unranked

0 citations

Shravan R. Dommaraju, Chunshuai Huang, Haiyang Cui, Yuwei Pan, Marko Nešić +5 more

Biosynthesis of Macrocyclic Peptides with C-Terminal β-Amino-α-keto Acid Groups by Three Different Metalloenzymes

ACS Central Science(2024)10.1021/acscentsci.4c00088

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0DataRank · unranked

44 citations

Lingyang Zhu, Danielle L. Gray, Toby J. Woods, Chandrashekhar Padhi, Kristen M. Flatt +3 more

Tryptophan-Centric Bioinformatics Identifies New Lasso Peptide Modifications

Biochemistry(2024)10.1021/acs.biochem.4c00035

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27 citations

Hamada Saad, Kyle E. Shelton, Lingyang Zhu, Xiaorui Guo, Douglas A. Mitchell +1 more

Unexpected Transformations during Pyrroloiminoquinone Biosynthesis

Journal of the American Chemical Society(2024)10.1021/jacs.4c03677

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14 citations

Lingyang Zhu, Wilfred A. van der Donk, Josseline S. Ramos‐Figueroa

Biosynthesis of peptide–nucleobase hybrids in ribosomal peptides

Nature Chemical Biology(2024)10.1038/s41589-024-01736-9

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0DataRank · unranked

8 citations

Natalia M. Vior, Lingyang Zhu, Andrew W. Truman, Satish K. Nair, Zeng‐Fei Pei

Unexpected transformations during pyrroloiminoquinone biosynthesis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.12.584671

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0DataRank · unranked

0 citations

Lingyang Zhu, Wilfred A. van der Donk, Josseline S. Ramos‐Figueroa

Biosynthesis of Biphenomycin-like Macrocyclic Peptides by Formation and Cross-Linking of Ortho-Tyrosines

Journal of the American Chemical Society(2025)10.1021/jacs.5c06044

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19 citations

Lingyang Zhu, Jeff Y. Chen, Chuan Huang, Ryan Moreira, Gregory L. Challis +3 more

The Biosynthetic Pathway to the Pyrroloiminoquinone Marine Natural Product Ammosamide C

Journal of the American Chemical Society(2025)10.1021/jacs.5c15504

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1 citations

Lingyang Zhu, Matthew Halliman, Wilfred A. van der Donk, Josseline S. Ramos‐Figueroa

Co-opting the bacterial lipoprotein pathway for the biosynthesis of lipidated macrocyclic peptides

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.31.685832

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3 citations

Lingyang Zhu, K. Zhang, Deborah A. Berthold, Wilfred A. van der Donk, Jeff Y. Chen

Biosynthesis of Macrocyclic Peptides by Formation and Crosslinking of ortho -Tyrosines

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.04.647296

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2 citations

Lingyang Zhu, Jeff Y. Chen, Ryan Moreira, Wilfred A. van der Donk, Chandrashekhar Padhi

The Biosynthetic Pathway to the Pyrroloiminoquinone Marine Natural Product Ammosamide C

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.03.674030

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0DataRank · unranked

2 citations

Lingyang Zhu, Matthew Halliman, Wilfred A. van der Donk, Josseline S. Ramos‐Figueroa

An unusual ring pattern in the Rosβ lanthipeptide of the two-component lantibiotic roseocin

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.27.684949

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1 citations

Lingyang Zhu, Youran Luo, Dipti Sareen, Wilfred A. van der Donk, Emily K. Desormeaux

Oxidative Peptide Backbone Cleavage by a HEXXH Enzyme During RiPP Biosynthesis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.30.685615

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0DataRank · unranked

1 citations

Yue Yu, Lingyang Zhu, Dinh Thanh Nguyen, Wilfred A. van der Donk, Yao Ouyang