🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

John Westbrook

Rutgers, The State University of New Jersey

ORCID: 0000-0002-6686-5475
Materials ScienceBiochemistry, Genetics and Molecular BiologyChemistry

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
88.9Author DataRank

Indexed papers

23in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 23 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Protein Data Bank

Acta Crystallographica Section D Biological Crystallography(2002)10.1107/s0907444902003451
Top 1%
12.6DataRank
Top 1%2640 citations

Tammy Battistuz, T. N. Bhat, Wolfgang F. Bluhm, Philip E. Bourne, Kyle Burkhardt +18 more

Papers

Driven by 40 papers — median percentile 89. Top paper: “The Protein Data Bank”.

The Protein Data Bank

Acta Crystallographica Section D Biological Crystallography(2002)10.1107/s0907444902003451
Top 1%
12.6DataRank
Top 1%2640 citations

Tammy Battistuz, T. N. Bhat, Wolfgang F. Bluhm, Philip E. Bourne, Kyle Burkhardt +18 more

[30] Macromolecular crystallographic information file

Methods in Enzymology(1997)10.1016/s0076-6879(97)77032-0
Top 1%
11.9DataRank
Top 1%177 citations

Helen M. Berman, Brian McMahon, Keith D. Watenpaugh, Paula M.D. Fitzgerald, Brian T. McMahon +3 more

The RCSB Protein Data Bank: new resources for research and education

Nucleic Acids Research(2012)10.1093/nar/gks1200
Top 1%
10.3DataRank
Top 1%537 citations

Chunxiao Bi, Wolfgang F. Bluhm, Cole H. Christie, Dimitris Dimitropoulos, Shuchismita Dutta +13 more

The RCSB Protein Data Bank: views of structural biology for basic and applied research and education

Nucleic Acids Research(2014)10.1093/nar/gku1214
Top 1%
10.2DataRank
Top 1%538 citations

Andreas Prlić, Chunxiao Bi, Wolfgang F. Bluhm, Cole H. Christie, Shuchismita Dutta +12 more

The Protein Data Bank and the challenge of structural genomics.

Nature Structural Biology(2000)10.1038/80734
Top 2%
8.2DataRank
Top 2%580 citations

T. N. Bhat, Philip E. Bourne, Zukang Feng, Helge Weissig, John Westbrook +3 more

The Protein Data Bank, 1999–

International Tables for Crystallography(2006)10.1107/97809553602060000722
Top 4%
5.6DataRank
Top 4%145 citations

T. N. Bhat, Helen M. Berman, John Westbrook, Zukang Feng, Gary L. Gilliland +4 more

RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning

Nucleic Acids Research(2022)10.1093/nar/gkac1077
Top 4%
5.5DataRank
Top 4%888 citations

Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao, Li Chen +36 more

RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D

Protein Science(2021)10.1002/pro.4213
Top 6%
4.0DataRank
Top 6%196 citations

Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Li Chen, G.V. Crichlow +30 more

Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students

Biomolecules(2022)10.3390/biom12101425
Top 8%
2.6DataRank
Top 8%133 citations

Helen M. Berman, José M. Duarte, Zukang Feng, Justin W. Flatt, Brian P. Hudson +13 more

Evolution of the SARS-CoV-2 proteome in three dimensions (3D) during the first six months of the COVID-19 pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.01.406637
Top 9%
2.5DataRank
Top 9%28 citations

Christine Zardecki, Elliott M. Dolan, Changpeng Lu, Zhuofan Shen, Shuchismita Dutta +59 more

Outcome of a Workshop on Archiving Structural Models of Biological Macromolecules

Structure(2006)10.1016/j.str.2006.06.005
N/A
2.5DataRank · unranked
70 citations

Stephen K. Burley, Wah Chiu, Andrej Sali, Alexei Adzhubei, Philip E. Bourne +28 more

PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167599
Top 10%
2.1DataRank
Top 10%95 citations

Jasmine Young, Chenghua Shao, Zukang Feng, Vladimir Guranović, Catherine L. Lawson +17 more

RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D

Protein Science(2022)10.1002/pro.4482
Top 11%
2.0DataRank
Top 11%107 citations

Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao, Li Chen +36 more

RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances

Journal of Molecular Biology(2023)10.1016/j.jmb.2023.167994
Top 11%
1.9DataRank
Top 11%80 citations

Charmi Bhikadiya, Chunxiao Bi, Henry Chao, José M. Duarte, Shuchismita Dutta +12 more

An ontology driven architecture for derived representations of macromolecular structure

Bioinformatics(2002)10.1093/bioinformatics/18.9.1280
N/A
1.9DataRank · unranked
18 citations

Philip E. Bourne, John Westbrook, Douglas S. Greer

The Protein Data Bank

Protein Structure(2003)10.1201/9780203911327.ch14
Top 12%
1.7DataRank
Top 12%33 citations

John Westbrook, Christine Zardecki, Helen M. Berman, Philip E. Bourne

The Protein Data Bank: A Case Study in Management of Community Data

Current Proteomics(2004)10.2174/1570164043488252
Top 13%
1.5DataRank
Top 13%18 citations

John Westbrook, Helen M. Berman, Philip E. Bourne

Realism about PDB

Nature Biotechnology(2007)10.1038/nbt0807-845
N/A
1.5DataRank · unranked
19 citations

Kim Henrick, Haruki Nakamura, Philip E. Bourne, John Westbrook, John L. Markley +1 more

New system for archiving integrative structures

Acta Crystallographica Section D Structural Biology(2021)10.1107/s2059798321010871
Top 17%
1.2DataRank
Top 17%43 citations

Benjamin Webb, Maryam Fayazi, Serban Voinea, Hongsuda Tangmunarunkit, Sai J. Ganesan +6 more

RCSB Protein Data Bank 1D tools and services

Bioinformatics(2020)10.1093/bioinformatics/btaa1012
Top 18%
1.1DataRank
Top 18%33 citations

Yana Rose, John Westbrook, S.K. Burley, José M. Duarte, Joan Segura

Modernized uniform representation of carbohydrate molecules in the Protein Data Bank

Glycobiology(2021)10.1093/glycob/cwab039
Top 19%
1.1DataRank
Top 19%32 citations

Zukang Feng, John Westbrook, Ezra Peisach, John M. Berrisford, Yasuyo Ikegawa +5 more

The RCSB Protein Data Bank: redesigned web site and web services

Nucleic Acids Research(2010)10.1093/nar/gkq1021
N/A
0.976DataRank · unranked
670 citations

C. Bi, Benjamin Yukich, Peter W. Rose, Bojan Beran, Bi Chen +12 more

Impact of the Protein Data Bank on antineoplastic approvals

Drug Discovery Today(2020)10.1016/j.drudis.2020.02.002
Top 24%
0.835DataRank
Top 24%32 citations

Rose Soskind, Brian P. Hudson, S.K. Burley, John Westbrook

ModelCIF: An Extension of PDBx/mmCIF Data Representation for Computed Structure Models

Journal of Molecular Biology(2023)10.1016/j.jmb.2023.168021
Top 31%
0.630DataRank
Top 31%22 citations

Gerardo Tauriello, Stefan Bienert, Juergen Haas, Benjamin Webb, Augustin Žídek +20 more

The evolution of the RCSB Protein Data Bank website

WIREs Computational Molecular Science(2011)10.1002/wcms.57
Top 32%
0.617DataRank
Top 32%11 citations

Bojan Beran, Chunxiao Bi, Wolfgang F. Bluhm, Dimitris Dimitropoulos, Zukang Feng +11 more

STAR/mmCIF: An ontology for macromolecular structure

Bioinformatics(2000)10.1093/bioinformatics/16.2.159
N/A
0.601DataRank · unranked
54 citations

Philip E. Bourne, John Westbrook

IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168546
Top 46%
0.395DataRank
Top 46%11 citations

Benjamin Webb, John Westbrook, Thomas D. Goddard, Christian A. Hanke, Andrea Graziadei +30 more

ModelCIF: An extension of PDBx/mmCIF data representation for computed structure models

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.06.518550
Top 63%
0.216DataRank
Top 63%3 citations

Gerardo Tauriello, Stefan Bienert, Juergen Haas, Benjamin Webb, Augustin Žídek +20 more

Announcement of the BioSync web site.

Nature Structural Biology(2001)10.1038/90359
N/A
0.208DataRank · unranked
3 citations

Ward Fleri, Wolfgang F. Bluhm, Philip E. Bourne, Janet L. Smith, John Westbrook +1 more

Restraint Validation of Biomolecular Structures Determined by NMR in the Protein Data Bank

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.15.575520
N/A
0DataRank · unranked
1 citations

Eliza Płoskoń, Roberto Tejero, Masashi Yokochi, Déborah Harrus, Yu‐He Liang +17 more

Evolution of the SARS‐CoV‐2 proteome in three dimensions (3D) during the first 6 months of the COVID‐19 pandemic

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26250
N/A
0DataRank · unranked
49 citations

Christine Zardecki, Elliott M. Dolan, Changpeng Lu, Zhuofan Shen, Shuchismita Dutta +59 more

Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank

Structure(2021)10.1016/j.str.2021.02.004
N/A
0DataRank · unranked
44 citations

John Westbrook, Raul Sala, Oliver S. Smart, G. Bricogne, Masaaki Matsubara +9 more

Archiving Integrative Structural Models

Biophysical Journal(2021)10.1016/j.bpj.2020.11.1702
N/A
0DataRank · unranked
0 citations

Benjamin Webb, John Westbrook, Hongsuda Tangmunarunkit, Serban Voinea, Carl Kesselman +3 more

Electron microscopy holdings of the Protein Data Bank: the impact of the resolution revolution, new validation tools, and implications for the future

Biophysical Reviews(2022)10.1007/s12551-022-01013-w
N/A
0DataRank · unranked
46 citations

Helen M. Berman, Wah Chiu, Wei Dai, Justin W. Flatt, Brian P. Hudson +11 more

Simplified quality assessment for small-molecule ligands in the Protein Data Bank

Structure(2022)10.1016/j.str.2021.10.003
N/A
0DataRank · unranked
24 citations

John Westbrook, Changpeng Lu, Charmi Bhikadiya, Ezra Peisach, Jasmine Y. Young +7 more

Exploring experimental structures and computed structure models from artificial intelligence/machine learning at RCSB Protein Data Bank (RCSB PDB, RCSB.org)

Biophysical Journal(2023)10.1016/j.bpj.2022.11.1606
N/A
0DataRank · unranked
0 citations

José Alberto Duarte, Sebastian Bittrich, Chunxiao Bi, Charmi Bhikadiya, Maryam Fayazi +10 more

Restraint Validation of Biomolecular Structures Determined By NMR in the Protein Data Bank

SSRN Electronic Journal(2023)10.2139/ssrn.4507732
N/A
0DataRank · unranked
0 citations

Eliza Płoskoń, Roberto Tejero, Masashi Yokochi, Déborah Harrus, Yu‐He Liang +17 more

Community recommendations on cryoEM data archiving and validation

IUCrJ(2024)10.1107/s2052252524001246
N/A
0DataRank · unranked
35 citations

Paul D. Adams, Sarah J. Butcher, Catherine L. Lawson, Alexis Rohou, Peter B. Rosenthal +42 more

Restraint validation of biomolecular structures determined by NMR in the Protein Data Bank

Structure(2024)10.1016/j.str.2024.02.011
N/A
0DataRank · unranked
7 citations

Eliza Płoskoń, Roberto Tejero, Masashi Yokochi, Déborah Harrus, Yu‐He Liang +17 more

Making fluorescence-based integrative structures and associated kinetic information accessible

Nature Methods(2024)10.1038/s41592-024-02428-x
N/A
0DataRank · unranked
4 citations

John Westbrook, Benjamin Webb, Thomas-Otavio Peulen, Catherine L. Lawson, Andrej Sali +4 more