James R. Monaghan

Biochemistry, Genetics and Molecular BiologyMaterials ScienceNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 20 papers. Top paper: “Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ”.

Combinatorial Transcriptional Profiling of Mouse and Human Enteric Neurons Identifies Shared and Disparate Subtypes In Situ

Gastroenterology(2020)10.1053/j.gastro.2020.09.032

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0DataRank · unranked

126 citations

Eric Tycksen, Austin N. Southard-Smith, Karen K. Deal, Joseph T. Benthal, Dennis P. Buehler +9 more

3D visualization of macromolecule synthesis

eLife(2020)10.7554/elife.60354

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0DataRank · unranked

16 citations

Ester Comellas, Eun Kyung Jeon, Johanna E. Farkas, Marylou Joetzjer, Julien Garnier +3 more

A DNA-based optical nanosensor for in vivo imaging of acetylcholine in the peripheral nervous system

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.06.189696

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0DataRank · unranked

0 citations

Hongrong Yang, Michelle Mu, Nicholas Micovic, Kira E. Poskanzer, James R. Monaghan +2 more

Combinatorial transcriptional profiling of mouse and human enteric neurons identifies shared and disparate subtypes in situ

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.03.187211

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0DataRank · unranked

0 citations

Eric Tycksen, Austin N. Southard-Smith, Karen K. Deal, Joseph T. Benthal, Dennis P. Buehler +9 more

Lung injury in axolotl salamanders induces an organ‐wide proliferation response

Developmental Dynamics(2021)10.1002/dvdy.315

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0DataRank · unranked

26 citations

Peter Giunta, Natalie Grace Schultz, Jackson R. Griffiths, Timothy J. Duerr, Yaa Kyeremateng +4 more

Imaging in vivo acetylcholine release in the peripheral nervous system with a fluorescent nanosensor

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2023807118

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0DataRank · unranked

18 citations

Hongrong Yang, Michelle Mu, Nicholas Micovic, Kira E. Poskanzer, James R. Monaghan +2 more

HDAC Inhibitor Titration of Transcription and Axolotl Tail Regeneration

Frontiers in Cell and Developmental Biology(2021)10.3389/fcell.2021.767377

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8 citations

Jeramiah J. Smith, Raissa F. Cecil, Mirindi Kabangu, Timothy J. Duerr, James R. Monaghan +6 more

A constitutively expressed fluorescence ubiquitin cell cycle indicator (FUCCI) in axolotls for studying tissue regeneration

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.30.437716

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0DataRank · unranked

11 citations

Eun Kyung Jeon, Kaylee M. Wells, A. R. Villanueva, Ashley W. Seifert, Catherine D McCusker +2 more

Local mechanical stimuli shape tissue growth in vertebrate joint morphogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.28.458034

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0DataRank · unranked

2 citations

Johanna E. Farkas, Giona Kleinberg, Katlyn Lloyd, Thomas Mueller, Timothy J. Duerr +4 more

Wnt Signaling Coordinates the Expression of Limb Patterning Genes During Axolotl Forelimb Development and Regeneration

Frontiers in Cell and Developmental Biology(2022)10.3389/fcell.2022.814250

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0DataRank · unranked

44 citations

Timothy J. Duerr, Qingchao Qiu, Santiago Galvan, S. Randal Voss, James R. Monaghan +1 more

Usability of deep learning pipelines for 3D nuclei identification with Stardist and Cellpose

Cells and Development(2022)10.1016/j.cdev.2022.203806

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27 citations

Sophia Wang, Ester Comellas, James R. Monaghan, Sandra J. Shefelbine, Giona Kleinberg

Hybridization Chain Reaction Fluorescence In Situ Hybridization (HCR-FISH) in Ambystoma mexicanum Tissue

Methods in molecular biology(2022)10.1007/978-1-0716-2659-7_6

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0DataRank · unranked

27 citations

Timothy J. Duerr, David Stein, Evan T. Mun, James R. Monaghan, Alex M. Lovely

A constitutively expressed fluorescent ubiquitination-based cell-cycle indicator (FUCCI) in axolotls for studying tissue regeneration

Development(2022)10.1242/dev.199637

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0DataRank · unranked

17 citations

Eun Kyung Jeon, Kaylee M. Wells, A. R. Villanueva, Ashley W. Seifert, Catherine D McCusker +2 more

Local mechanical stimuli correlate with tissue growth in axolotl salamander joint morphogenesis

Proceedings of the Royal Society B Biological Sciences(2022)10.1098/rspb.2022.0621

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0DataRank · unranked

14 citations

Johanna E. Farkas, Giona Kleinberg, Katlyn Lloyd, Thomas Mueller, Timothy J. Duerr +4 more

Click Chemistry-Enabled Conjugation Strategy for Producing Dibenzodiazepinone-Type Fluorescent Probes To Target M2Acetylcholine Receptors

Bioconjugate Chemistry(2022)10.1021/acs.bioconjchem.2c00446

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0DataRank · unranked

7 citations

Nicholas Micovic, James R. Monaghan, Heather A. Clark, Hongrong Yang

Establishing a New Research Axolotl Colony

Methods in molecular biology(2022)10.1007/978-1-0716-2659-7_2

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0DataRank · unranked

6 citations

James R. Monaghan, Anastasia S. Yandulskaya

Regenerating axolotl retinas regrow diverse cell types with modulation by Notch signaling and reconnect to the brain

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.28.489898

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0DataRank · unranked

4 citations

Melissa N. Miller, Ronak Ansaripour, Rebecca L. Carrier, James R. Monaghan, Anastasia S. Yandulskaya

Retinoic acid breakdown is required for proximodistal positional identity during axolotl limb regeneration

Nature Communications(2025)10.1038/s41467-025-59497-5

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0DataRank · unranked

9 citations

Melissa Miller, Sage Kumar, Dareen Bakr, Jackson R. Griffiths, Aditya K. Gautham +4 more

A Characterization of Axolotl Digit Regeneration: Conserved Mechanisms, Divergent Patterning, and a Critical Role for Hedgehog Signaling

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.03.657663

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0DataRank · unranked

0 citations

Melissa Miller, Timothy J. Duerr, A Owen, James R. Monaghan, Jackson R. Griffiths

Toward human lung regeneration: gaining insights from the axolotl salamander Ambystoma mexicanum

American Journal of Respiratory Cell and Molecular Biology(2025)10.1165/rcmb.2025-0097ps

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0DataRank · unranked

0 citations

Wathone Win, Darrell N. Kotton, James R. Monaghan, Aaron C Dobie