Eric G. Pamer

Also affiliated with University of Chicago, Rockefeller University

Biochemistry, Genetics and Molecular BiologyMedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.2Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Compilation of longitudinal microbiota data and hospitalome from hematopoietic cell transplantation patients

Scientific Data(2021)10.1038/s41597-021-00860-8

Top 22%

0.925DataRank

Top 22%54 citations

Bradford P. Taylor, Camilla Ceccarani, Emily Fontana, Luigi A. Amoretti, Roberta J. Wright +10 more

Papers

Driven by 39 papers — median percentile 59. Top paper: “Dietary- and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration”.

Dietary- and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration

Nature Microbiology(2024)10.1038/s41564-023-01560-2

N/A

1.7DataRank · unranked

74 citations

Isaac T. Younker, Matthew S. Schechter, Paola Nol Bernardino, Raphaël Méheust, Joshua Stemczynski +17 more

Microbiota as Predictor of Mortality in Allogeneic Hematopoietic-Cell Transplantation

New England Journal of Medicine(2020)10.1056/nejmoa1900623

N/A

0.985DataRank · unranked

710 citations

Antonio L. C. Gomes, Sean M. Devlin, Eric R. Littmann, Ying Taur, Anthony D. Sung +47 more

Compilation of longitudinal microbiota data and hospitalome from hematopoietic cell transplantation patients

Scientific Data(2021)10.1038/s41597-021-00860-8

Top 22%

0.925DataRank

Top 22%54 citations

Bradford P. Taylor, Camilla Ceccarani, Emily Fontana, Luigi A. Amoretti, Roberta J. Wright +10 more

Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies

Nature(2023)10.1038/s41586-022-05546-8

N/A

0.885DataRank · unranked

364 citations

Marcus C. de Goffau, María Elisa Pérez-Muñoz, Marie‐Claire Arrieta, Fredrik Bäckhed, Peer Bork +41 more

Fecal microbiota diversity disruption and clinical outcomes after auto-HCT: a multicenter observational study

Blood(2020)10.1182/blood.2020006923

N/A

0.661DataRank · unranked

81 citations

Sarah Lindner, Antonio L. C. Gomes, Sean M. Devlin, Gunjan L. Shah, Anthony D. Sung +31 more

High-resolution analyses of associations between medications, microbiome, and mortality in cancer patients

Cell(2023)10.1016/j.cell.2023.05.007

N/A

0.609DataRank · unranked

57 citations

Kate A. Markey, Oriana Miltiadous, Anqi Dai, Nicholas R. Waters, Keimya Sadeghi +27 more

Monocyte Reconstitution and Gut Microbiota Composition after Hematopoietic Stem Cell Transplantation

Clinical Hematology International(2020)10.2991/chi.k.201108.002

N/A

0.269DataRank · unranked

5 citations

Allen W. Zhang, Sohn G. Kim, Jonathan U. Peled, Simone Becattini, Eric R. Littmann +4 more

A compilation of fecal microbiome shotgun metagenomics from hospitalized patients undergoing hematopoietic cell transplantation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.23.457365

Top 59%

0.255DataRank

Top 59%4 citations

Chen Liao, Bradford P. Taylor, Emily Fontana, Luigi A. Amoretti, Roberta J. Wright +12 more

Flagellar switch inverted repeat impacts flagellar invertibility and varies Clostridioides difficile RT027/MLST1 virulence

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.22.546185

N/A

0.165DataRank · unranked

2 citations

Huaiying Lin, Ying Pigli, Jonathan K. Sia, Pola Kuhn, Evan S. Snitkin +7 more

TAM mediates adaptation of carbapenem-resistant Klebsiella pneumoniae to antimicrobial stress during host colonization and infection

PLoS Pathogens(2021)10.1371/journal.ppat.1009309

N/A

0DataRank · unranked

23 citations

Matthew T. Sorbara, Eric G. Pamer, Hea-Jin Jung

Cervicovaginal bacterial communities in reproductive-aged Tanzanian women withSchistosoma mansoni,Schistosoma haematobium, or without schistosome infection

The ISME Journal(2021)10.1038/s41396-020-00868-9

N/A

0DataRank · unranked

15 citations

Myung Hee Lee, Jane Mlingi, Ndalloh Paul, Christine Aristide, Emily Fontana +12 more

Antibiotic Degradation by Commensal Microbes Shields Pathogens

Infection and Immunity(2020)10.1128/iai.00012-20

N/A

0DataRank · unranked

28 citations

James W. Keith, H. Mytrang, Tobias M. Hohl, Eric G. Pamer, Simone Becattini +1 more

Immunomodulatory fecal metabolites are associated with mortality in COVID-19 patients with respiratory failure

Nature Communications(2022)10.1038/s41467-022-34260-2

N/A

0DataRank · unranked

71 citations

Nicholas P. Dylla, Steven D. Pearson, P.A. Lecompte-Osorio, Ravi Nayak, Maryam Khalid +22 more

Translating Microbiome Research From and To the Clinic

Annual Review of Microbiology(2022)10.1146/annurev-micro-041020-022206

N/A

0DataRank · unranked

32 citations

Christopher Lehmann, Cody G. Cole, Eric G. Pamer, Zhenrun J. Zhang

Dietary- and host-derived metabolites are used by diverse gut bacteria for anaerobic respiration

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.26.521950

N/A

0DataRank · unranked

5 citations

Isaac T. Younker, Matthew S. Schechter, Paola Nol Bernardino, Raphaël Méheust, Joshua Stemczynski +17 more

The TaxUMAP atlas: efficient display of large clinical microbiome data reveals ecological competition involved in protection against bacteremia

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.27.509746

N/A

0DataRank · unranked

1 citations

Ana Djuković, Bradford P. Taylor, Jinyuan Yan, Caichen Duan, Grant Hussey +15 more

Enhancing mucosal immunity by transient microbiota depletion

Nature Communications(2020)10.1038/s41467-020-18248-4

N/A

0DataRank · unranked

26 citations

Eric R. Littmann, Ruth Seok, Luigi A. Amoretti, Emily Fontana, Roberta J. Wright +6 more

Bifidobacteria metabolize lactulose to optimize gut metabolites and prevent systemic infection in patients with liver disease

Nature Microbiology(2023)10.1038/s41564-023-01493-w

N/A

0DataRank · unranked

66 citations

Huaiying Lin, Christopher Lehmann, Nicholas P. Dylla, Cody G. Cole, Jake D. Mostad +27 more

Functional and Genomic Variation between Human-Derived Isolates of Lachnospiraceae Reveals Inter- and Intra-Species Diversity

Cell Host & Microbe(2020)10.1016/j.chom.2020.05.005

N/A

0DataRank · unranked

427 citations

Eric R. Littmann, Emily Fontana, Thomas Moody, Claire E. Kohout, Mergim Gjonbalaj +5 more

Assembling symbiotic bacterial species into live therapeutic consortia that reconstitute microbiome functions

Cell Host & Microbe(2023)10.1016/j.chom.2023.03.002

N/A

0DataRank · unranked

46 citations

Eric G. Pamer, Rita A. Oliveira

Virulence and genomic diversity among clinical isolates of ST1 (BI/NAP1/027) Clostridioides difficile

Cell Reports(2023)10.1016/j.celrep.2023.112861

N/A

0DataRank · unranked

24 citations

Huaiying Lin, Marie-Maude Allen, Julian R. Garneau, Jonathan K. Sia, Rita C. Smith +15 more

The TaxUMAP atlas: Efficient display of large clinical microbiome data reveals ecological competition in protection against bacteremia

Cell Host & Microbe(2023)10.1016/j.chom.2023.05.027

N/A

0DataRank · unranked

23 citations

Ana Djuković, Bradford P. Taylor, Jinyuan Yan, Caichen Duan, Grant Hussey +15 more

Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma

Communications Medicine(2023)10.1038/s43856-023-00265-1

N/A

0DataRank · unranked

14 citations

Bingqing Xie, Ying Li, Je Yeong Sone, Sharbel Romanos, Chang Chen +27 more

Reduced immunomodulatory metabolite concentrations in peri-transplant fecal samples from heart allograft recipients

Frontiers in Transplantation(2023)10.3389/frtra.2023.1182534

N/A

0DataRank · unranked

6 citations

Huaiying Lin, Jiho Han, Emerald Adler, Jaye Boissiere, Maryam Khalid +13 more

Exposure and resistance to lantibiotics impact microbiota composition and function

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.30.573728

N/A

0DataRank · unranked

4 citations

Cody G. Cole, Huaiying Lin, Chunyu Wu, Fidel Haro, Emma McSpadden +3 more

Virulence and genomic diversity among clinical isolates of ST1 (BI/NAP1/027) Clostridioides difficile

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.12.523823

N/A

0DataRank · unranked

3 citations

Huaiying Lin, Marie-Maude Allen, Julian R. Garneau, Jonathan K. Sia, Rita C. Smith +15 more

An evolution-based framework for describing human gut bacteria

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.04.569969

N/A

0DataRank · unranked

3 citations

Robert Y. Chen, Hannah Giba, Vivek Behera, Bidisha Barat, Anitha Sundararajan +5 more

Compositional Flux Within the Intestinal Microbiota and Risk for Bloodstream Infection With Gram-negative Bacteria

Clinical Infectious Diseases(2020)10.1093/cid/ciaa068

N/A

0DataRank · unranked

150 citations

Eric R. Littmann, Jonathan U. Peled, Sergio Giralt, Marcel R.M. van den Brink, Eric G. Pamer +2 more

Comprehensive analyses of a large human gut Bacteroidales culture collection reveal species- and strain-level diversity and evolution

Cell Host & Microbe(2024)10.1016/j.chom.2024.08.016

N/A

0DataRank · unranked

39 citations

Cody G. Cole, Michael J. Coyne, Huaiying Lin, Nicholas P. Dylla, Rita C. Smith +17 more

Protection against Clostridioides difficile disease by a naturally avirulent strain

Cell Host & Microbe(2024)10.1016/j.chom.2024.11.003

N/A

0DataRank · unranked

14 citations

S.R. Harper, Emma McSpadden, Sophie S Son, Marie-Maude Allen, Huaiying Lin +15 more

Protection against Clostridioides difficile disease by a naturally avirulent C. difficile strain

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.06.592814

N/A

0DataRank · unranked

3 citations

S.R. Harper, Emma McSpadden, Sophie S Son, Marie-Maude Allen, Huaiying Lin +15 more

Dietary Fiber Lacks a Consistent Effect on Immune Checkpoint Blockade Efficacy Across Diverse Murine Tumor Models

Cancer Research(2025)10.1158/0008-5472.can-24-4378

N/A

0DataRank · unranked

10 citations

Gabriela Reyes‐Castellanos, Ziqing Chen, Zihong Chen, Sarah J. Mitchell, Michael R. MacArthur +15 more

Flagellar switch inverted repeats impact heterogeneity in flagellar gene expression and thus C. difficile RT027/MLST1 virulence

Cell Reports(2025)10.1016/j.celrep.2025.115830

N/A

0DataRank · unranked

5 citations

Huaiying Lin, Ying Pigli, Jonathan K. Sia, Pola Kuhn, Hannah Ruppel +8 more

Subspecies phylogeny in the human gut revealed by co-evolutionary constraints across the bacterial kingdom

Cell Systems(2025)10.1016/j.cels.2024.12.008

N/A

0DataRank · unranked

1 citations

Robert Y. Chen, Hannah Giba, Vivek Behera, Bidisha Barat, Anitha Sundararajan +5 more

Lantibiotic-producing bacteria impact microbiome resilience and colonization resistance

Cell Host & Microbe(2025)10.1016/j.chom.2025.11.007

N/A

0DataRank · unranked

1 citations

Zhenrun J. Zhang, Shravan R. Dommaraju, Qiwen Dong, Rosemary L. Pope, Sophie S Son +9 more

IDBac: an open-access web platform to identify bacteria and analyze relationships in culture collections using MALDI-TOF mass spectrometry

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.15.682631

N/A

0DataRank · unranked

2 citations

Michael Strobel, Julia Saulog, Liana Zaroubi, Bruno S. Paulo, Mandisa Timba +39 more

Microbiota profiling to predict clinical events post-heart transplantation 3122

The Journal of Immunology(2025)10.1093/jimmun/vkaf283.959

N/A

0DataRank · unranked

0 citations

Christopher Kaperak, Huaiying Lin, Jackelyn Cantoral, Caroline N. Jadczak, Ricardo Mora +6 more

A multisite genomic epidemiology study of Clostridioides difficile infections in the U.S. supports differential roles of healthcare versus community spread for two common strains

medRxiv(2020)10.1101/2020.11.28.20240192

N/A

0DataRank · unranked

1 citations

Vincent B. Young, Eric G. Pamer, Tor Savidge, Mini Kamboj, Kevin W. Garey +2 more

Rapid transcriptional and metabolic adaptation of intestinal microbes to host immune activation

Cell Host & Microbe(2021)10.1016/j.chom.2021.01.003

N/A

0DataRank · unranked

105 citations

Matthew T. Sorbara, Sohn G. Kim, Eric L. Littmann, Qiwen Dong, Gavin Walsh +6 more

Eric G. Pamer

Indexed papers

Top data-sharing exemplar

Papers