Dong‐Jun Yu

Nanjing University of Science and Technology

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 20 papers. Top paper: “Comprehensive assessment of machine learning-based methods for predicting antimicrobial peptides”.

Comprehensive assessment of machine learning-based methods for predicting antimicrobial peptides

Briefings in Bioinformatics(2021)10.1093/bib/bbab083

N/A

0DataRank · unranked

160 citations

Fuyi Li, André Leier, Dongxu Xiang, Hsin‐Hui Shen, Tatiana T Marquez Lago +4 more

Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008865

N/A

0DataRank · unranked

84 citations

Chengxin Zhang, Eric W. Bell, Wei Zheng, Xiaogen Zhou, Dong‐Jun Yu +2 more

Leveraging the attention mechanism to improve the identification of DNA N6-methyladenine sites

Briefings in Bioinformatics(2021)10.1093/bib/bbab351

N/A

0DataRank · unranked

74 citations

Yan Liu, Jian Xu, Xiaoyu Wang, Xinxin Peng, Jiangning Song +2 more

SAResNet: self-attention residual network for predicting DNA-protein binding

Briefings in Bioinformatics(2021)10.1093/bib/bbab101

N/A

0DataRank · unranked

55 citations

Yan Liu, Jiangning Song, Dong‐Jun Yu, Long-Chen Shen

PScL-HDeep: image-based prediction of protein subcellular location in human tissue using ensemble learning of handcrafted and deep learned features with two-layer feature selection

Briefings in Bioinformatics(2021)10.1093/bib/bbab278

N/A

0DataRank · unranked

44 citations

Ke Han, Fazal Hadi, Jian Xu, Jiangning Song, Dong‐Jun Yu +1 more

Prediction of disease-associated nsSNPs by integrating multi-scale ResNet models with deep feature fusion

Briefings in Bioinformatics(2021)10.1093/bib/bbab530

N/A

0DataRank · unranked

33 citations

Ying Zhang, Jian Xu, Muhammad Arif, Jiangning Song, Dong‐Jun Yu +1 more

Protein inter‐residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14

Proteins Structure Function and Bioinformatics(2021)10.1002/prot.26211

N/A

0DataRank · unranked

23 citations

Chengxin Zhang, Wei Zheng, Xiaogen Zhou, Eric W. Bell, Dong‐Jun Yu +2 more

Improving protein fold recognition using triplet network and ensemble deep learning

Briefings in Bioinformatics(2021)10.1093/bib/bbab248

N/A

0DataRank · unranked

17 citations

Ke Han, Yiheng Zhu, Ying Zhang, Long-Chen Shen, Jiangning Song +2 more

MAResNet: predicting transcription factor binding sites by combining multi-scale bottom-up and top-down attention and residual network

Briefings in Bioinformatics(2021)10.1093/bib/bbab445

N/A

0DataRank · unranked

15 citations

Long-Chen Shen, Yiheng Zhu, Jian Xu, Jiangning Song, Dong‐Jun Yu +1 more

Why can deep convolutional neural networks improve protein fold recognition? A visual explanation by interpretation

Briefings in Bioinformatics(2021)10.1093/bib/bbab001

N/A

0DataRank · unranked

15 citations

Yiheng Zhu, Xiaoning Song, Jiangning Song, Dong‐Jun Yu, Yan Liu

Integrating unsupervised language model with triplet neural networks for protein gene ontology prediction

PLoS Computational Biology(2022)10.1371/journal.pcbi.1010793

N/A

0DataRank · unranked

70 citations

Chengxin Zhang, Dong‐Jun Yu, Yang Zhang, Yiheng Zhu

VPatho: a deep learning-based two-stage approach for accurate prediction of gain-of-function and loss-of-function variants

Briefings in Bioinformatics(2022)10.1093/bib/bbac535

N/A

0DataRank · unranked

27 citations

Chen Li, Shahid Iqbal, Muhammad Arif, Fuyi Li, Maha A. Thafar +6 more

PScL-DDCFPred: an ensemble deep learning-based approach for characterizing multiclass subcellular localization of human proteins from bioimage data

Bioinformatics(2022)10.1093/bioinformatics/btac432

N/A

0DataRank · unranked

15 citations

Fazal Hadi, Jiangning Song, Dong‐Jun Yu, Matee Ullah

TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction

Genomics Proteomics & Bioinformatics(2022)10.1016/j.gpb.2022.03.001

N/A

0DataRank · unranked

11 citations

Chengxin Zhang, Yan Liu, Gilbert S. Omenn, Peter L. Freddolino, Dong‐Jun Yu +2 more

Improving the prediction of DNA-protein binding by integrating multi-scale dense convolutional network with fault-tolerant coding

Analytical Biochemistry(2022)10.1016/j.ab.2022.114878

N/A

0DataRank · unranked

8 citations

Long-Chen Shen, Yuan-Hao Jiang, Shang Gao, Jiangning Song, Dong‐Jun Yu +1 more

PScL-2LSAESM: bioimage-based prediction of protein subcellular localization by integrating heterogeneous features with the two-level SAE-SM and mean ensemble method

Bioinformatics(2022)10.1093/bioinformatics/btac727

N/A

0DataRank · unranked

5 citations

Fazal Hadi, Jiangning Song, Dong‐Jun Yu, Matee Ullah

Performing protein fold recognition by exploiting a stack convolutional neural network with the attention mechanism

Analytical Biochemistry(2022)10.1016/j.ab.2022.114695

N/A

0DataRank · unranked

3 citations

Yan Liu, Jian Xu, Jiangning Song, Dong‐Jun Yu, Ke Han

Interpretable prediction models for widespread m6A RNA modification across cell lines and tissues

Bioinformatics(2023)10.1093/bioinformatics/btad709

N/A

0DataRank · unranked

24 citations

Zhikang Wang, Yiwen Zhang, Shanshan Li, Yuming Guo, Jiangning Song +2 more

Prediction of Multiple Types of RNA Modifications via Biological Language Model

IEEE/ACM Transactions on Computational Biology and Bioinformatics(2023)10.1109/tcbb.2023.3283985

N/A

0DataRank · unranked

23 citations

Fang Ge, Fuyi Li, Xibei Yang, Jiangning Song, Dong‐Jun Yu +1 more

TripletCell: a deep metric learning framework for accurate annotation of cell types at the single-cell level

Briefings in Bioinformatics(2023)10.1093/bib/bbad132

N/A

0DataRank · unranked

17 citations

Wei Guo, Chen Li, Long-Chen Shen, Robin B. Gasser, Jiangning Song +3 more