Janet Lee

Also affiliated with Kaiser Permanente, Pusan National University, University of Colorado Anschutz Medical Campus

MedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile

0.431Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Prevalence and features of hypervirulent Klebsiella pneumoniae in respiratory specimens at a US hospital system

Infection and Immunity(2024)10.1128/iai.00486-24

Top 43%

0.431DataRank

Top 43%9 citations

Alina Iovleva, Nathalie Chen, D. R. Woods, Akansha Pradhan, Jonah L. Sonnabend +7 more

Papers

Driven by 56 papers — median percentile 57. Top paper: “Lentivector cryptic splicing mediates increase in CD34+ clones expressing truncated HMGA2 in human X-linked severe combined immunodeficiency”.

Lentivector cryptic splicing mediates increase in CD34+ clones expressing truncated HMGA2 in human X-linked severe combined immunodeficiency

Nature Communications(2022)10.1038/s41467-022-31344-x

N/A

1.6DataRank · unranked

48 citations

Siyuan Liu, Colin L. Sweeney, Julie Brault, Narda Whiting‐Theobald, Michelle Ma +20 more

Neutrophils and lymphopenia, an unknown axis in severe COVID-19 disease

PLoS Pathogens(2021)10.1371/journal.ppat.1009850

N/A

1.5DataRank · unranked

44 citations

Janet Lee, Prabir Ray, Hernán F. Peñaloza

Elastase Activity From Pseudomonas aeruginosa Respiratory Isolates and ICU Mortality

CHEST Journal(2021)10.1016/j.chest.2021.04.015

N/A

1.3DataRank · unranked

30 citations

Hernán F. Peñaloza, William Bain, Mei Hulver, Roberta T. Mettus, Peter Jorth +6 more

Protein arginine N-methyltransferase 4 (PRMT4) contributes to lymphopenia in experimental sepsis

Thorax(2022)10.1136/thoraxjnl-2021-217526

N/A

0.771DataRank · unranked

17 citations

Xiuying Li, Tiao Li, Xiaoyun Li, Toru Nyunoya, Kong Chen +8 more

Stressed erythrophagocytosis induces immunosuppression during sepsis through heme-mediated STAT1 dysregulation

Journal of Clinical Investigation(2020)10.1172/jci137468

N/A

0.606DataRank · unranked

56 citations

Tomeka Suber, Shekina Gonzalez-Ferrer, Zeyu Xiong, Hernán F. Peñaloza, Rick van der Geest +20 more

Cough-Specific Quality of Life Predicts Disease Progression Among Patients With Interstitial Lung Disease

CHEST Journal(2022)10.1016/j.chest.2022.03.025

N/A

0.564DataRank · unranked

42 citations

Emily White, Elizabeth Freiheit, Mary Beth Scholand, Mary E. Strek, Anna J. Podolanczuk +40 more

Inter-rater reliability and prognostic value of baseline Radiographic Assessment of Lung Edema (RALE) scores in observational cohort studies of inpatients with COVID-19

BMJ Open(2023)10.1136/bmjopen-2022-066626

N/A

0.510DataRank · unranked

29 citations

Saketram Komanduri, Hafiz Qurashi, Anatoliy Korzhuk, Halimat Lawal, Nicholas Abourizk +32 more

People critically ill with COVID-19 exhibit peripheral immune profiles predictive of mortality and reflective of SARS-CoV-2 lung viral burden

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100476

N/A

0.457DataRank · unranked

20 citations

Ashwin Somasundaram, Feng Shan, Carly Cardello, Creg J. Workman, Georgios D. Kitsios +24 more

Neutrophils and galectin-3 defend mice from lethal bacterial infection and humans from acute respiratory failure

Nature Communications(2024)10.1038/s41467-024-48796-y

N/A

0.457DataRank · unranked

20 citations

Tomasz W. Kamiński, Brent T. Schlegel, William Bain, Sanmei Hu, Akruti Patel +12 more

Prevalence and features of hypervirulent Klebsiella pneumoniae in respiratory specimens at a US hospital system

Infection and Immunity(2024)10.1128/iai.00486-24

Top 43%

0.431DataRank

Top 43%9 citations

Alina Iovleva, Nathalie Chen, D. R. Woods, Akansha Pradhan, Jonah L. Sonnabend +7 more

SCUBE1 Controls BMPR2-Relevant Pulmonary Endothelial Function

JACC Basic to Translational Science(2020)10.1016/j.jacbts.2020.08.010

N/A

0.373DataRank · unranked

11 citations

Ying Tang, Yi‐Yin Tai, Adam Handen, Jingsi Zhao, Gil Speyer +24 more

Stability of SARS-CoV-2-Encoded Proteins and Their Antibody Levels Correlate with Interleukin 6 in COVID-19 Patients

mSystems(2022)10.1128/msystems.00058-22

N/A

0.330DataRank · unranked

8 citations

Georgios D. Kitsios, William Bain, Chenxiao Wang, Tiao Li, Kristen V. Fanning +6 more

Optimizing interpretation of survival studies of fresh and aged transfused biotin‐labeled RBCs

Transfusion(2022)10.1111/trf.17192

N/A

0.330DataRank · unranked

8 citations

Daniel B. Kim‐Shapiro, Tamir Kanias, Linda R. Moore, Joseph E. Kiss, Janet Lee +5 more

Targeted degradation of extracellular mitochondrial aspartyl-tRNA synthetase modulates immune responses

Nature Communications(2024)10.1038/s41467-024-50031-7

N/A

0.300DataRank · unranked

6 citations

Daniela Farkas, Rabab El-Mergawy, J. Adair, Ajit Elhance, Moemen Eltobgy +17 more

Radiographic Assessment of Lung Edema (RALE) Scores are Highly Reproducible and Prognostic of Clinical Outcomes for Inpatients with COVID-19

medRxiv(2022)10.1101/2022.06.10.22276249

N/A

0.269DataRank · unranked

5 citations

Saketram Komanduri, Hafiz Qurashi, Anatoliy Korzhuk, Halimat Lawal, Nicholas Abourizk +32 more

Lower respiratory tract myeloid cells harbor SARS-CoV-2 and display an inflammatory phenotype

medRxiv(2020)10.1101/2020.08.11.20171967

N/A

0.104DataRank · unranked

1 citations

Hernán F. Peñaloza, Mark S. Ladinsky, Rick van der Geest, Mara Sullivan, Mark A. Ross +11 more

Thrombospondin-1 Restricts Interleukin-36γ-Mediated Neutrophilic Inflammation during Pseudomonas aeruginosa Pulmonary Infection

mBio(2021)10.1128/mbio.03336-20

N/A

0DataRank · unranked

27 citations

Tolani F. Olonisakin, William Bain, Yanyan Qu, Rick van der Geest, Jill Zupetic +9 more

Bifurcated monocyte states are predictive of mortality in severe COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.10.430499

N/A

0DataRank · unranked

9 citations

Ashwin Somasundaram, Feng Shan, Carly Cardello, Creg J. Workman, Georgios D. Kitsios +24 more

Machine Learning Based Algorithms to Impute PaO 2 from SpO2 Values and Development of an Online Calculator

Research Square(2021)10.21203/rs.3.rs-1053360/v1

N/A

0DataRank · unranked

2 citations

Jill Zupetic, Mohammadreza Tabary, Rebecca DeSensi, Mehdi Nouraie, Xinghua Lu +3 more

Imputation of PaO2 from SpO2 values from the MIMIC-III Critical Care Database Using Machine-Learning Based Algorithms

medRxiv(2021)10.1101/2021.04.21.21255877

N/A

0DataRank · unranked

1 citations

Jill Zupetic, Mehdi Nouraie, Xinghua Lu, Richard D. Boyce, Janet Lee +1 more

Lentivector cryptic splicing mediates increase in CD34+ clones expressing truncated HMGA2 in human SCID-X1

Research Square(2021)10.21203/rs.3.rs-858393/v1

N/A

0DataRank · unranked

0 citations

Siyuan Liu, Colin L. Sweeney, Julie Brault, Narda Whiting‐Theobald, Michelle Ma +15 more

Brief Report: Hydroxychloroquine does not induce hemolytic anemia or organ damage in a “humanized” G6PD A- mouse model

PLoS ONE(2020)10.1371/journal.pone.0240266

N/A

0DataRank · unranked

6 citations

Ling Wang, Sébastien Gingras, Qinzi Xu, Minying Yang, Darrell J. Triulzi +6 more

Lower Respiratory Tract Myeloid Cells Harbor SARS-Cov-2 and Display an Inflammatory Phenotype

CHEST Journal(2020)10.1016/j.chest.2020.10.083

N/A

0DataRank · unranked

13 citations

Hernán F. Peñaloza, Mark S. Ladinsky, Rick van der Geest, Mara Sullivan, Mark A. Ross +11 more

Plasma SARS-CoV-2 RNA Levels as a Biomarker of Lower Respiratory Tract SARS-CoV-2 Infection in Critically Ill Patients With COVID-19

The Journal of Infectious Diseases(2022)10.1093/infdis/jiac157

N/A

0DataRank · unranked

23 citations

Asma Naqvi, Faraaz Shah, Valerie F. Boltz, Mary F. Kearney, Bryan J. McVerry +10 more

Antibodies targeting conserved non-canonical antigens and endemic coronaviruses associate with favorable outcomes in severe COVID-19

Cell Reports(2022)10.1016/j.celrep.2022.111020

N/A

0DataRank · unranked

21 citations

Syed A. Rahman, Anthony R. Cillo, Godhev Manakkat Vijay, Ashwin Somasundaram, Creg J. Workman +14 more

MAGT1 messenger RNA-corrected autologous T and natural killer cells for potential cell therapy in X-linked immunodeficiency with magnesium defect, Epstein-Barr virus infection and neoplasia disease

Cytotherapy(2020)10.1016/j.jcyt.2020.08.013

N/A

0DataRank · unranked

15 citations

Ronald J. Meis, Linhong Li, Ezekiel Bello, Taylor Liu, Colin L. Sweeney +12 more

Machine learning based algorithms to impute PaO2 from SpO2 values and development of an online calculator

Scientific Reports(2022)10.1038/s41598-022-12419-7

N/A

0DataRank · unranked

9 citations

Jill Zupetic, Mohammadreza Tabary, Rebecca DeSensi, Mehdi Nouraie, Xinghua Lu +3 more

Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome

JCI Insight(2020)10.1172/jci.insight.135678

N/A

0DataRank · unranked

100 citations

Brian Rosborough, Jie Chen, Sudipta Das, Georgios D. Kitsios, Bryan J. McVerry +6 more

Sepsis restructures the mitochondrial calcium uniporter complex in the lymphoid tissues of mice and humans

Communications Biology(2025)10.1038/s42003-025-08475-0

N/A

0DataRank · unranked

1 citations

Jianguo Lin, Baobo Zou, Jack R Killinger, Andrew C. Sayce, Thiagarajan Meyyappan +5 more

Plasma SARS-CoV-2 RNA levels as a biomarker of lower respiratory tract SARS-CoV-2 infection in critically ill patients with COVID-19

medRxiv(2022)10.1101/2022.01.10.22269018

N/A

0DataRank · unranked

8 citations

Asma Naqvi, Faraaz Shah, Valerie F. Boltz, Mary F. Kearney, Bryan J. McVerry +10 more

Trajectories of host-response biomarkers and inflammatory subphenotypes in COVID-19 patients across the spectrum of respiratory support

medRxiv(2022)10.1101/2022.11.28.22282858

N/A

0DataRank · unranked

2 citations

Callie Drohan, William Bain, Faraaz Shah, Matthew Bittner, John Evankovich +25 more

A Compensatory RNase E Variation Increases Iron Piracy and Virulence in Multidrug-Resistant Pseudomonas aeruginosa during Macrophage Infection

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.24.513460

N/A

0DataRank · unranked

0 citations

Anna Clara Milesi Galdino, Sam P. Limsuwannarot, Diana Celedonio, Elizabeth Dimitrova, M. Broerman +6 more

Antiviral CD8+T-cell immune responses are impaired by cigarette smoke and in COPD

European Respiratory Journal(2023)10.1183/13993003.01374-2022

N/A

0DataRank · unranked

34 citations

Xinyuan Wang, Adrian Schmalen, Sophia Haines, Martin Wolff, Huan Ma +26 more

Increased Alternative Complement Pathway Function and Improved Survival during Critical Illness

American Journal of Respiratory and Critical Care Medicine(2020)10.1164/rccm.201910-2083oc

N/A

0DataRank · unranked

47 citations

Huihua Li, Rick van der Geest, Sara Moore, Tolani F. Olonisakin, Brian Ahn +20 more

Trajectories of Host-Response Subphenotypes in Patients With COVID-19 Across the Spectrum of Respiratory Support

CHEST Critical Care(2023)10.1016/j.chstcc.2023.100018

N/A

0DataRank · unranked

22 citations

Callie Drohan, William Bain, Faraaz Shah, Matthew Bittner, John Evankovich +25 more

The upper and lower respiratory tract microbiome in severe aspiration pneumonia

iScience(2023)10.1016/j.isci.2023.106832

N/A

0DataRank · unranked

25 citations

Vi D. Nguyen, Khaled Sayed, Nameer Al‐Yousif, Caitlin Schaefer, Faraaz Shah +18 more

Phagocytosis is a primary determinant of pulmonary clearance of clinical Klebsiella pneumoniae isolates

Frontiers in Cellular and Infection Microbiology(2023)10.3389/fcimb.2023.1150658

N/A

0DataRank · unranked

17 citations

Hongye Fan, Hernán F. Peñaloza, William Bain, Zeyu Xiong, Naina Kohli +10 more

A compensatory RNase E variation increases Iron Piracy and Virulence in multidrug-resistant Pseudomonas aeruginosa during Macrophage infection

PLoS Pathogens(2023)10.1371/journal.ppat.1010942

N/A

0DataRank · unranked

13 citations

Anna Clara Milesi Galdino, Sam P. Limsuwannarot, Diana Celedonio, Elizabeth Dimitrova, M. Broerman +6 more

Serum metabolomic signatures of fatty acid oxidation defects differentiate host-response subphenotypes of acute respiratory distress syndrome

Respiratory Research(2023)10.1186/s12931-023-02447-w

N/A

0DataRank · unranked

13 citations

Stacy G. Wendell, Steven J. Mullett, Benjamin E. Zuchelkowski, William Bain, Georgios D. Kitsios +9 more

2-deoxy-2-[18F]fluoro-D-glucose Positron Emission Tomography to Monitor Lung Inflammation and Therapeutic Response to Dexamethasone in a Murine Model of Acute Lung Injury

Molecular Imaging and Biology(2023)10.1007/s11307-023-01813-w

N/A

0DataRank · unranked

6 citations

Clayton E. Barnes, Joseph D. Latoche, Kathryn E. Day, Jessie R. Nedrow, Janet Lee +2 more

In vivo evolution of a Klebsiella pneumoniae capsule defect promotes complement-mediated opsono-phagocytosis and persistence during recurrent infection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.31.542722

N/A

0DataRank · unranked

5 citations

Brian Ahn, Hernán F. Peñaloza, Christi L. McElheny, Nathanial J. Tolman, Rick van der Geest +24 more

Evolved bacterial siderophore-mediated antibiotic cross-protection

Research Square(2023)10.21203/rs.3.rs-2644953/v1

N/A

0DataRank · unranked

4 citations

Anna Clara Milesi Galdino, Mylène Vaillancourt, Diana Celedonio, Kara Huse, Yohei Doi +2 more

Siderophores promote cooperative interspecies and intraspecies cross-protection against antibiotics in vitro

Nature Microbiology(2024)10.1038/s41564-024-01601-4

N/A

0DataRank · unranked

43 citations

Mylène Vaillancourt, Diana Celedonio, Kara Huse, Yohei Doi, Janet Lee +2 more

Practical Guidelines for Collection, Manipulation and Inactivation of SARS‐CoV‐2 and COVID‐19 Clinical Specimens

Current Protocols in Cytometry(2020)10.1002/cpcy.77

N/A

0DataRank · unranked

59 citations

Janet Lee, Alan M. Watson, Molly S. Stitt‐Fischer, William Bain

In Vivo Evolution of a Klebsiella pneumoniae Capsule Defect With wcaJ Mutation Promotes Complement-Mediated Opsonophagocytosis During Recurrent Infection

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae003

N/A

0DataRank · unranked

16 citations

Brian Ahn, Hernán F. Peñaloza, Christi L. McElheny, Nathanial J. Tolman, Rick van der Geest +24 more

The evolution of radiographic edema in ARDS and its association with clinical outcomes: A prospective cohort study in adult patients

Journal of Critical Care(2020)10.1016/j.jcrc.2020.01.012

N/A

0DataRank · unranked

66 citations

Libing Yang, John Evankovich, William Bain, D.G. Dunlap, Faraaz Shah +10 more

Functional effects of an African glucose‐6‐phosphate dehydrogenase (G6PD) polymorphism (Val68Met) on red blood cell hemolytic propensity and post‐transfusion recovery

Transfusion(2024)10.1111/trf.17756

N/A

0DataRank · unranked

8 citations

Elizabeth R. Rochon, Sébastien Gingras, Benjamin E. Zuchelkowski, Derek J Sinchar, Elimira Alipour +10 more

Lung Epithelium Releases Growth Differentiation Factor 15 in Response to Pathogen-mediated Injury

American Journal of Respiratory Cell and Molecular Biology(2024)10.1165/rcmb.2023-0429oc

N/A

0DataRank · unranked

6 citations

Harinath Bahudhanapati, Mao Jiang, Mohammadreza Tabary, Rick van der Geest, Nathanial J. Tolman +24 more

Oxidized phospholipid and transcriptomic signatures of THC-related vaping associated lung injury

Scientific Reports(2024)10.1038/s41598-024-79585-8

N/A

0DataRank · unranked

6 citations

Mohammadreza Tabary, William Bain, Tolani F. Olonisakin, Karina C. Lockwood, Zeyu Xiong +20 more

STAT1 Employs Myeloid Cell–Extrinsic Mechanisms to Regulate the Neutrophil Response and Provide Protection against Invasive Klebsiella pneumoniae Lung Infection

ImmunoHorizons(2024)10.4049/immunohorizons.2300104

N/A

0DataRank · unranked

5 citations

Hernán F. Peñaloza, Rick van der Geest, Zeyu Xiong, A.P. Gheware, Mohammadreza Tabary +14 more

Evolutionary loss of an antibiotic efflux pump increases Pseudomonas aeruginosa quorum sensing mediated virulence in vivo

Research Square(2024)10.21203/rs.3.rs-5391023/v1

N/A

0DataRank · unranked

0 citations

Sheryl Erica Fernandes, Humberto E. Ortega, Mylène Vaillancourt, Anna Clara Milesi Galdino, Aleksandr Stotland +8 more

Evolutionary loss of an antibiotic efflux pump increases Pseudomonas aeruginosa quorum sensing mediated virulence in vivo

Nature Communications(2025)10.1038/s41467-025-63284-7

N/A

0DataRank · unranked

3 citations

Humberto E. Ortega, Mylène Vaillancourt, Anna Clara Milesi Galdino, Aleksandr Stotland, Kyu Shik Mun +8 more

Interleukin-36 Cytokines in Infectious and Non-Infectious Lung Diseases

Frontiers in Immunology(2021)10.3389/fimmu.2021.754702

N/A

0DataRank · unranked

29 citations

Rick van der Geest, Joel A. Ybe, Theodore J. Standiford, Janet Lee, Hernán F. Peñaloza

A new thiol-independent mechanism of epithelial host defense against Pseudomonas aeruginosa: iNOS/NO• sabotage of theft-ferroptosis

Redox Biology(2021)10.1016/j.redox.2021.102045

N/A

0DataRank · unranked

88 citations

Tamil S. Anthonymuthu, Liubov A. Ponomareva, Austin B. Souryavong, Galina V. Shurin, Alexandr A. Kapralov +7 more

Severe Acute Respiratory Syndrome Coronavirus 2 Viremia Is Associated With Coronavirus Disease 2019 Severity and Predicts Clinical Outcomes

Clinical Infectious Diseases(2021)10.1093/cid/ciab686

N/A

0DataRank · unranked

140 citations

William Bain, Asma Naqvi, Brittany Staines, Priscila M. S. Castanha, Haopu Yang +22 more

Intractable Coronavirus Disease 2019 (COVID-19) and Prolonged Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Replication in a Chimeric Antigen Receptor-Modified T-Cell Therapy Recipient: A Case Study

Clinical Infectious Diseases(2021)10.1093/cid/ciab072

N/A

0DataRank · unranked

140 citations

William Bain, Jana L. Jacobs, Sham Nambulli, Urvi M. Parikh, Anthony R. Cillo +28 more

Janet Lee

Indexed papers

Top data-sharing exemplar

Papers