Antonio J. Giráldez

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 28 papers. Top paper: “Analyses of mRNA structure dynamics identify embryonic gene regulatory programs”.

Analyses of mRNA structure dynamics identify embryonic gene regulatory programs

Nature Structural & Molecular Biology(2018)10.1038/s41594-018-0091-z

N/A

4.1DataRank · unranked

132 citations

Eva Maria Novoa, Charles E. Vejnar, Valeria Yartseva, Carter M. Takacs, Sharon L. R. Kardia +2 more

Genetic compensation triggered by mutant mRNA degradation

Nature(2019)10.1038/s41586-019-1064-z

N/A

1.0DataRank · unranked

1064 citations

Zacharias Kontarakis, Andrea Rossi, Carsten Kuenne, Stefan Günther, Nana Fukuda +10 more

Best practices for genome-wide RNA structure analysis: combination of mutational profiles and drop-off information

bioRxiv (Cold Spring Harbor Laboratory)(2017)10.1101/176883

N/A

0.744DataRank · unranked

14 citations

Jean-Denis Beaudoin, John S. Mattick, Sharon L. R. Kardia, Antonio J. Giráldez, Eva Maria Novoa

linc-mipep and linc-wrb encode micropeptides that regulate chromatin accessibility in vertebrate-specific neural cells

eLife(2023)10.7554/elife.82249

N/A

0.525DataRank · unranked

13 citations

Liyun Miao, Ho‐Joon Lee, Timothy Gerson, Sarah E Dube, Valeria Schmidt +10 more

G3BP1 ribonucleoprotein complexes regulate focal adhesion protein mobility and cell migration

Cell Reports(2025)10.1016/j.celrep.2025.115237

N/A

0.489DataRank · unranked

10 citations

Mengwei Hu, Pieter Martino, Lauren Thornton, Charles E. Vejnar, Gang Zhen +9 more

A functional non-coding RNA is produced from xbp-1 mRNA

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.20.000869

N/A

0.140DataRank · unranked

1 citations

Jean-Denis Beaudoin, Carrie Ann Davison, Sara Guckian Kosmaczewski, Benjamin I. Meyer, Antonio J. Giráldez +2 more

mRNA structure dynamics identifies the embryonic RNA regulome

bioRxiv (Cold Spring Harbor Laboratory)(2018)10.1101/274290

N/A

0.117DataRank · unranked

1 citations

Eva Maria Novoa, Charles E. Vejnar, Valeria Yartseva, Sharon L. R. Kardia, Carter M. Takacs +2 more

The landscape of pioneer factor activity reveals the mechanisms of chromatin reprogramming and genome activation

Molecular Cell(2022)10.1016/j.molcel.2022.01.024

N/A

0DataRank · unranked

106 citations

Yin Tang, Ashley R. Bonneau, Shun Hang Chan, Mina Kojima, Mark E. Pownall +6 more

Nano3P-seq: transcriptome-wide analysis of gene expression and tail dynamics using end-capture nanopore cDNA sequencing

Nature Methods(2022)10.1038/s41592-022-01714-w

N/A

0DataRank · unranked

68 citations

Gregor Diensthuber, Huanle Liu, Anna Delgado-Tejedor, Cassandra Kontur, Adnan Niazi +6 more

A proteomics approach identifies novel resident zebrafish Balbiani body proteins Cirbpa and Cirbpb

Developmental Biology(2022)10.1016/j.ydbio.2022.01.006

N/A

0DataRank · unranked

21 citations

Manami Kobayashi, Y. James Aykit, Yaniv M. Elkouby, Matías Escobar-Aguirre, Charles E. Vejnar +3 more

Stage Specific Transcriptomic Analysis and Database for Zebrafish Oogenesis

Frontiers in Cell and Developmental Biology(2022)10.3389/fcell.2022.826892

N/A

0DataRank · unranked

17 citations

Allison Jamieson-Lucy, Charles E. Vejnar, Karine Levy, Antonio J. Giráldez, Mary C. Mullins +2 more

linc-mipep and linc-wrb encode micropeptides that regulate chromatin accessibility in vertebrate-specific neural cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.21.501032

N/A

0DataRank · unranked

0 citations

Ho‐Joon Lee, Liyun Miao, Yin Tang, Sarah E Dube, Timothy Gerson +10 more

Chromatin expansion microscopy reveals nanoscale organization of transcription and chromatin

Science(2023)10.1126/science.ade5308

N/A

0DataRank · unranked

106 citations

Liyun Miao, Charles E. Vejnar, Ons M’Saad, Alice Sherrard, Megan A. Frederick +6 more

The scientific director: A complementary model for academic leadership

Cell(2023)10.1016/j.cell.2023.05.036

N/A

0DataRank · unranked

5 citations

Antonio J. Giráldez, Caroline Hendry

Genetically encoded affinity reagents (GEARs): A toolkit for visualizing and manipulating endogenous protein function in vivo

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.15.567075

N/A

0DataRank · unranked

4 citations

Caroline Hoppe, Alice Sherrard, Liyun Miao, Mina Kojima, Srikar Krishna Gopinath +5 more

The maternal-to-zygotic transition: reprogramming of the cytoplasm and nucleus

Nature Reviews Genetics(2024)10.1038/s41576-024-00792-0

N/A

0DataRank · unranked

52 citations

Caroline Hoppe, Antonio J. Giráldez, Mina Kojima

UPF1 regulates mRNA stability by sensing poorly translated coding sequences

Cell Reports(2024)10.1016/j.celrep.2024.114074

N/A

0DataRank · unranked

16 citations

Mario Abdelmessih, Charles E. Vejnar, Valeria Yartseva, Linnea A. Weiss, Ethan C. Strayer +3 more

NaP-TRAP reveals the regulatory grammar in 5’UTR-mediated translation regulation during zebrafish development

Nature Communications(2024)10.1038/s41467-024-55274-y

N/A

0DataRank · unranked

9 citations

Srikar Krishna Gopinath, Haejeong Lee, Charles E. Vejnar, Nils Neuenkirchen, Amit Gupta +3 more

Maternal regulation of the vertebrate oocyte-to-embryo transition

PLoS Genetics(2024)10.1371/journal.pgen.1011343

N/A

0DataRank · unranked

6 citations

Florence L. Marlow, Elliott W. Abrams, Hong Zhang, Manami Kobayashi, Tripti Gupta +12 more

Genetically encoded affinity reagents are a toolkit for visualizing and manipulating endogenous protein function in vivo

Nature Communications(2025)10.1038/s41467-025-61003-w

N/A

0DataRank · unranked

6 citations

Caroline Hoppe, Alice Sherrard, Liyun Miao, Mina Kojima, Pieter Martino +5 more

In vivo differentiation of embryonic cells devoid of key reprogramming factors

Cell Reports(2025)10.1016/j.celrep.2025.116498

N/A

0DataRank · unranked

1 citations

Liyun Miao, Caroline Hoppe, Curtis W. Boswell, Damir Musaev, Mario Abdelmessih +6 more

RNADecayCafe, a uniformly processed atlas of RNA half-life estimates across multiple human cell lines

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.19.671151

N/A

0DataRank · unranked

2 citations

Dié Tang, Antonio J. Giráldez, Matthew D. Simon, Isaac W. Vock

Ythdf m6A Readers Function Redundantly during Zebrafish Development

Cell Reports(2020)10.1016/j.celrep.2020.108598

N/A

0DataRank · unranked

110 citations

Minsun Jeong, Daniel Cifuentes, Antonio J. Giráldez, Cassandra Kontur

A Functional Non-coding RNA Is Produced from xbp-1 mRNA

Neuron(2020)10.1016/j.neuron.2020.06.015

N/A

0DataRank · unranked

15 citations

Jean-Denis Beaudoin, Carrie Ann Davison, Sara Guckian Kosmaczewski, Benjamin I. Meyer, Antonio J. Giráldez +2 more

LabxDB: versatile databases for genomic sequencing and lab management

Bioinformatics(2020)10.1093/bioinformatics/btaa557

N/A

0DataRank · unranked

20 citations

Antonio J. Giráldez, Charles E. Vejnar

Bicc1 and Dicer regulate left-right patterning through post-transcriptional control of the Nodal inhibitor Dand5

Nature Communications(2021)10.1038/s41467-021-25464-z

N/A

0DataRank · unranked

48 citations

Maike Getwan, Megan E. Dowdle, Jason C. McSheene, Vanessa Gonzalez, José L. Pelliccia +13 more

Genome editing in animals with minimal PAM CRISPR-Cas9 enzymes

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.06.447255

N/A

0DataRank · unranked

3 citations

Carlos Sánchez-Bolaños, Ismael Moreno-Sánchez, David Brena, Dmytro Kukhtar, Miguel Ruiz-López +11 more

Giving translation a hand

Developmental Cell(2021)10.1016/j.devcel.2021.10.016

N/A

0DataRank · unranked

0 citations

Valerie A. Tornini, Antonio J. Giráldez, Ethan C. Strayer