Daniel Blankenberg

Cleveland Clinic Lerner College of Medicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

0.989Author DataRank

Indexed papers

4in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 4 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A crowdsourced set of curated structural variants for the human genome

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007933

Top 40%

0.482DataRank

Top 40%14 citations

Noah Spies, Patrick Pai, Chun Shen Lim, Andrew Carroll, Giuseppe Narzisi +19 more

Papers

Driven by 31 papers — median percentile 35. Top paper: “No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics”.

No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics

PLoS Pathogens(2020)10.1371/journal.ppat.1008643

N/A

1.5DataRank · unranked

34 citations

Marius van den Beek, Daniel Blankenberg, Dave Bouvier, John Chilton, Nate Coraor +13 more

A single-cell RNA-sequencing training and analysis suite using the Galaxy framework

GigaScience(2020)10.1093/gigascience/giaa102

N/A

0.687DataRank · unranked

21 citations

Bérénice Batut, Alexander Ostrovsky, Christophe Antoniewski, Dave Clements, Fidel Ramírez +18 more

GenomicSuperSignature facilitates interpretation of RNA-seq experiments through robust, efficient comparison to public databases

Nature Communications(2022)10.1038/s41467-022-31411-3

N/A

0.523DataRank · unranked

14 citations

Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni +5 more

A crowdsourced set of curated structural variants for the human genome

PLoS Computational Biology(2020)10.1371/journal.pcbi.1007933

Top 40%

0.482DataRank

Top 40%14 citations

Noah Spies, Patrick Pai, Chun Shen Lim, Andrew Carroll, Giuseppe Narzisi +19 more

Analysis of nested alternate open reading frames and their encoded proteins

NAR Genomics and Bioinformatics(2022)10.1093/nargab/lqac076

N/A

0.311DataRank · unranked

6 citations

Debjit Khan, Iyappan Ramachandiran, Daniel Blankenberg, Paul L Fox, Kommireddy Vasu

DICED (Database of Identified Cleavage Sites Endemic to Diseases States): A Searchable Web Interface for Terminomics/Degradomics

PROTEOMICS(2025)10.1002/pmic.202500007

Top 59%

0.258DataRank

Top 59%4 citations

Sumit Bhutada, Daniel R. Martin, Joyce Guzowski, Daniel Blankenberg, Suneel Apte +1 more

Characterization of microbial dark matter at scale with MetaSBT and taxonomy-aware Sequence Bloom Trees

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.25.672238

N/A

0.165DataRank · unranked

2 citations

Daniel Blankenberg, Fabio Cumbo

Genomics to Notebook (g2nb): extending the electronic notebook to address the challenges of bioinformatics analysis

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.04.535621

Top 70%

0.146DataRank

Top 70%1 citations

Thorin Tabor, John Liefeld, Jayadev Joshi, Forrest Kim, Helga Thorvaldsdóttir +3 more

Endosomes deliver ceramide phosphoethanolamine with unique acyl chain anchors to the cleavage furrow during male meiotic cytokinesis

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.27.441622

N/A

0.104DataRank · unranked

1 citations

Si-Hung Le, Valentina Baena, VIJAY NAGAMPALLI, Adam Harned, Kunio Nagashima +7 more

GenomicSuperSignature: interpretation of RNA-seq experiments through robust, efficient comparison to public databases

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445900

Top 78%

0.104DataRank

Top 78%1 citations

Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni +5 more

Galaxy Training: A Powerful Framework for Teaching!

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.02.494505

N/A

0DataRank · unranked

2 citations

Helena Rasche, Simon Gladman, Hans-Rudolf Hotz, Delphine Larivière, Daniel Blankenberg +29 more

Endosomes deliver ceramide phosphoethanolamine with unique acyl chain 2 anchors to the cleavage furrow during male meiotic cytokinesis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.14.484204

N/A

0DataRank · unranked

0 citations

Si-Hung Le, Valentina Baena, VIJAY NAGAMPALLI, Adam Harned, Kunio Nagashima +7 more

Galaxy Training: A powerful framework for teaching!

PLoS Computational Biology(2023)10.1371/journal.pcbi.1010752

N/A

0DataRank · unranked

109 citations

Helena Rasche, Simon Gladman, Hans-Rudolf Hotz, Delphine Larivière, Daniel Blankenberg +29 more

Contemporary Antiretroviral Therapy Dysregulates Iron Transport and Augments Mitochondrial Dysfunction in HIV-Infected Human Microglia and Neural-Lineage Cells

International Journal of Molecular Sciences(2023)10.3390/ijms241512242

N/A

0DataRank · unranked

12 citations

Paige Minchella, David Alvarez-Carbonell, Neeraja Purandare, VIJAY NAGAMPALLI, Daniel Blankenberg +6 more

Contemporary Antiretroviral Therapy Dysregulates Iron Transport and Augments Mitochondrial Dysfunction in HIV-Infected Human Microglia and Neural-Lineage Cells

Preprints.org(2023)10.20944/preprints202307.1492.v1

N/A

0DataRank · unranked

6 citations

Paige Minchella, David Alvarez-Carbonell, Neeraja Purandare, VIJAY NAGAMPALLI, Daniel Blankenberg +6 more

The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

Nucleic Acids Research(2024)10.1093/nar/gkae410

N/A

0DataRank · unranked

865 citations

Linelle Ann L Abueg, Enis Afgan, Olivier Allart, Ahmed Awan, Wendi Bacon +95 more

Generalized open-source workflows for atomistic molecular dynamics simulations of viral helicases

GigaScience(2024)10.1093/gigascience/giae026

N/A

0DataRank · unranked

3 citations

Daniel Blankenberg, Bryan Raubenolt

Feature selection with vector-symbolic architectures: a case study on microbial profiles of shotgun metagenomic samples of colorectal cancer

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.18.624180

N/A

0DataRank · unranked

2 citations

Simone Truglia, Emanuel Weitschek, Daniel Blankenberg, Fabio Cumbo

Microbiology Galaxy Lab: The first community-driven gateway for reproducible and FAIR analysis of microbial data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.23.629682

N/A

0DataRank · unranked

2 citations

Nikolaos Pechlivanis, Nikolaos Strepis, Pierre Amato, Matthias Bernt, Anshu Bhardwaj +31 more

Feature selection with vector-symbolic architectures: a case study on microbial profiles of shotgun metagenomic samples of colorectal cancer

Briefings in Bioinformatics(2025)10.1093/bib/bbaf177

N/A

0DataRank · unranked

7 citations

Simone Truglia, Emanuel Weitschek, Daniel Blankenberg, Fabio Cumbo

Large-scale classification of metagenomic samples: a comparative analysis of classical machine learning techniques vs a novel brain-inspired hyperdimensional computing approach

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.06.663394

N/A

0DataRank · unranked

1 citations

Fabio Cumbo, Daniel Blankenberg, Jayadev Joshi

Genomics to Notebook (g2nb): Extending the Electronic Notebook to Address the Challenges of Bioinformatics Analysis

Journal of Bioinformatics and Systems Biology(2025)10.26502/jbsb.5107096

N/A

0DataRank · unranked

0 citations

Thorin Tabor, John Liefeld, Jayadev Joshi, Forrest Kim, Edwin Huang +4 more

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update

Nucleic Acids Research(2020)10.1093/nar/gkaa434

N/A

0DataRank · unranked

558 citations

Enis Afgan, Qiang Gu, Dave Clements, Daniel Blankenberg, Jeremy Goecks +3 more

A single-cell RNA-seq Training and Analysis Suite using the Galaxy Framework

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.06.137570

N/A

0DataRank · unranked

3 citations

Bérénice Batut, Alexander Ostrovsky, Christophe Antoniewski, Dave Clements, Fidel Ramírez +18 more

Expanding the Galaxy’s reference data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.09.327114

N/A

0DataRank · unranked

3 citations

Jayadev Joshi, Nate Coraor, Jennifer Hillman‐Jackson, Dave Bouvier, Marius van den Beek +22 more

Adding software to package management systems can increase their citation by 280%

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.16.385211

N/A

0DataRank · unranked

0 citations

Dave Clements, Björn Grüning, Daniel Blankenberg, Jeremy Goecks, Vahid Jalili

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update

Nucleic Acids Research(2022)10.1093/nar/gkac247

N/A

0DataRank · unranked

1384 citations

Enis Afgan, Anton Nekrutenko, Björn Grüning, Daniel Blankenberg, Jeremy Goecks +89 more

Delivery of ceramide phosphoethanolamine lipids to the cleavage furrow through the endocytic pathway is essential for male meiotic cytokinesis

PLoS Biology(2022)10.1371/journal.pbio.3001599

N/A

0DataRank · unranked

17 citations

Si-Hung Le, Valentina Baena, VIJAY NAGAMPALLI, Adam Harned, Kunio Nagashima +7 more

Evaluating homophily in networks via HONTO (HOmophily Network TOol): a case study of chromosomal interactions in human PPI networks

Bioinformatics(2022)10.1093/bioinformatics/btac763

N/A

0DataRank · unranked

6 citations

Daniel Blankenberg, Fabio Cumbo, Paolo Giulio Franciosa, Daniele Santoni, Nicola Apollonio

Re-Expression of ERα and AR in Receptor Negative Endocrine Cancers via GSK3 Inhibition

Frontiers in Oncology(2022)10.3389/fonc.2022.824594

N/A

0DataRank · unranked

7 citations

Jayadev Joshi, I‐Ju Yeh, Yong‐Qiu Doughman, Daniel Blankenberg, David N. Wald +2 more

Expanding the Galaxy’s reference data

Bioinformatics Advances(2022)10.1093/bioadv/vbac030

N/A

0DataRank · unranked

3 citations

Jayadev Joshi, Nate Coraor, Jennifer Hillman‐Jackson, Dave Bouvier, Marius van den Beek +22 more

Daniel Blankenberg

Indexed papers

Top data-sharing exemplar

Papers