Daniel Deredge

Biochemistry, Genetics and Molecular BiologyChemistryMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 27 papers. Top paper: “Mechanism of antibody-specific deglycosylation and immune evasion by Streptococcal IgG-specific endoglycosidases”.

Mechanism of antibody-specific deglycosylation and immune evasion by Streptococcal IgG-specific endoglycosidases

Nature Communications(2023)10.1038/s41467-023-37215-3

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0.817DataRank · unranked

26 citations

Jonathan J. Du, Javier O. Cifuente, Lorena Rudolph, Mikel García-Alija, Erik H. Klontz +12 more

Structure and dynamics of an α-fucosidase reveal a mechanism for highly efficient IgG transfucosylation

Nature Communications(2020)10.1038/s41467-020-20044-z

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0DataRank · unranked

48 citations

Chao Li, Kyle C. Kihn, James K. Fields, Dorothy Beckett, Greg A. Snyder +5 more

Current Trends and Limitations in Dengue Antiviral Research

Tropical Medicine and Infectious Disease(2021)10.3390/tropicalmed6040180

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0DataRank · unranked

121 citations

Hernando Gutiérrez-Barbosa, Joel V. Chua, Daniel Deredge, O. Juliet

Molecular Basis of Selective Cytokine Signaling Inhibition by Antibodies Targeting a Shared Receptor

Frontiers in Immunology(2021)10.3389/fimmu.2021.779100

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0DataRank · unranked

23 citations

Kyle C. Kihn, Gabriel Svensson Birkedal, Erik H. Klontz, Kjell Sjöström, Sebastian Günther +7 more

Modeling the native ensemble of PhuS using enhanced sampling MD and HDX-ensemble reweighting

Biophysical Journal(2021)10.1016/j.bpj.2021.11.010

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0DataRank · unranked

20 citations

Tyree Wilson, Ally K. Smith, Richard T. Bradshaw, Patrick L. Wintrode, Lucy R. Forrest +3 more

A structure and function relationship study to identify the impact of the R721G mutation in the human mitochondrial lon protease

Archives of Biochemistry and Biophysics(2021)10.1016/j.abb.2021.108983

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0DataRank · unranked

2 citations

Monica M. Montano, Kristy Rochon, Jason A. Mears, Daniel Deredge, Patrick L. Wintrode +4 more

Insights into substrate recognition and specificity for IgG by Endoglycosidase S2

PLoS Computational Biology(2021)10.1371/journal.pcbi.1009103

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0DataRank · unranked

7 citations

Daniel Deredge, Erik H. Klontz, Jonathan J. Du, Eric J. Sundberg, Alexander D. MacKerell +1 more

Molecular basis of selective cytokine signaling inhibition by antibodies targeting a shared receptor

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.07.443154

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0DataRank · unranked

1 citations

Kyle C. Kihn, Gabriel Svensson Birkedal, Erik H. Klontz, Kjell Sjöström, Sebastian Günther +7 more

Biochemical and structural characterization of the fused Bacteroides fragilis NFeoAB domain reveals a role for FeoA

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.29.462438

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1 citations

Janae B. Brown, Juliet O. Obi, Sean M. O’Sullivan, Elsa D. Garcin, Daniel Deredge +2 more

A fusion of the Bacteroides fragilis ferrous iron import proteins reveals a role for FeoA in stabilizing GTP-bound FeoB

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.101808

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0DataRank · unranked

37 citations

Janae B. Brown, O. Juliet, Sean M. O’Sullivan, Elsa D. Garcin, Daniel Deredge +2 more

Interpreting Hydrogen-Deuterium Exchange Experiments with Molecular Simulations: Tutorials and Applications of the HDXer Ensemble Reweighting Software [Article v1.0]

Living Journal of Computational Molecular Science(2022)10.33011/livecoms.3.1.1521

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0DataRank · unranked

16 citations

Richard T. Bradshaw, Fabrizio Marinelli, Kyle C. Kihn, Ally K. Smith, Patrick L. Wintrode +4 more

Mechanism of antibody-specific deglycosylation and immune evasion by Streptococcal IgG-specific endoglycosidases

Research Square(2022)10.21203/rs.3.rs-1774503/v1

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0DataRank · unranked

1 citations

Jonathan J. Du, Javier O. Cifuente, Lorena Rudolph, Mikel García-Alija, Erik H. Klontz +12 more

Development and characterization of nanobodies that specifically target the oncogenic Phosphatase of Regenerating Liver-3 (PRL-3) and impact its interaction with a known binding partner, CNNM3

PLoS ONE(2023)10.1371/journal.pone.0285964

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0DataRank · unranked

7 citations

Kyle C. Kihn, Zachary A. Williamson, K. Martin Chow, Louis B. Hersh, Konstantin V. Korotkov +3 more

The structure of NAD+ consuming protein Acinetobacter baumannii TIR domain shows unique kinetics and conformations

Journal of Biological Chemistry(2023)10.1016/j.jbc.2023.105290

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0DataRank · unranked

3 citations

O. Juliet, Yajing Wang, Gabrielle Glendening, Jahid Carr, Constantine Tsibouris +18 more

The conformational landscape of a serpin N-terminal subdomain facilitates folding and in-cell quality control

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.24.537978

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0DataRank · unranked

2 citations

Kyle C. Kihn, Haiping Ke, Weiwei Kuo, Lila M. Gierasch, Daniel N. Hebert +4 more

Applications of hydrogen deuterium exchange ensemble reweighting to model native protein ensembles, macromolecular interactions and protein drug interactions

Biophysical Journal(2023)10.1016/j.bpj.2022.11.1861

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0DataRank · unranked

0 citations

Ally K. Smith, Daniel Deredge, Kyle C. Kihn

The structure of NAD + consuming protein Acinetobacter baumannii TIR domain shows unique kinetics and conformations

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.19.541320

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0DataRank · unranked

0 citations

O. Juliet, Yajing Wang, Gabrielle Glendening, Jahid Carr, Constantine Tsibouris +18 more

Antibodies targeting the shared cytokine receptor IL-1 receptor accessory protein invoke distinct mechanisms to block all cytokine signaling

Cell Reports(2024)10.1016/j.celrep.2024.114099

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0DataRank · unranked

16 citations

Elin Jaensson Gyllenbäck, Marek Bogacz, Juliet Obi, Gabriel Svensson Birkedal, Kjell Sjöström +13 more

Zinc and RNA Binding Is Linked to the Conformational Flexibility of ZRANB2: A CCCC-Type Zinc Finger Protein

Biochemistry(2024)10.1021/acs.biochem.4c00470

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0DataRank · unranked

4 citations

Abigail D. Reitz, Kyle C. Kihn, Daniel Deredge, Sarah L. J. Michel, Matthew S. Hursey

Identification of an Intrinsically Disordered Region (IDR) in Arginyltransferase 1 (ATE1)

Biochemistry(2024)10.1021/acs.biochem.4c00512

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0DataRank · unranked

2 citations

Rinky Parakra, Ayomide Oduwole, Fangliang Zhang, Daniel Deredge, Aaron T. Smith +1 more

Structural Dynamics of the Dengue Virus Non-structural 5 (NS5) Interactions with Promoter Stem Loop A (SLA)

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.03.626708

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0DataRank · unranked

1 citations

Kyle C. Kihn, Linfah McQueen, James K. Fields, Greg A. Snyder, Daniel Deredge +1 more

Structural dynamics of the dengue virus non-structural 5 (NS5) interactions with promoter stem-loop A (SLA)

npj Viruses(2025)10.1038/s44298-025-00112-1

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0DataRank · unranked

8 citations

Kyle C. Kihn, Linfah McQueen, James K. Fields, Greg A. Snyder, Daniel Deredge +1 more

A Safe MRI- and PET-guided Method for Increasing Osmotic Blood-Brain Barrier Permeability

Radiology(2025)10.1148/radiol.243396

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7 citations

Chengyan Chu, David Gulisashvili, Shalini Sharma, Lukasz Kalkowski, Lucia Fadon-Padilla +11 more

How ATP and dATP reposition class III ribonucleotide reductase cone domains to regulate enzyme activity

Science Advances(2025)10.1126/sciadv.ady9156

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0DataRank · unranked

2 citations

Kelsey R. Miller-Brown, Zhuangyu Zhao, Ally K. Smith, Christopher D. Dawson, Daniel Deredge +2 more

The Pseudomonas aeruginosa PhuS proximal ligand His-209 triggers a conformational switch in function from DNA binding to heme transfer

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.108440

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0DataRank · unranked

3 citations

Tyree Wilson, Samuel A. Krug, Susana Mouriño, Maureen A. Kane, Daniel Deredge +2 more

Antigen-Induced Allosteric Changes in a Human IgG1 Fc Increase Low-Affinity Fcγ Receptor Binding

Structure(2020)10.1016/j.str.2020.03.001

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0DataRank · unranked

44 citations

Daniel Deredge, Krishanu Ray, Neelakshi Gohain, William D. Tolbert, Anthony L. DeVico +4 more

Mapping the distribution and affinities of ligand interaction sites on human serum albumin

Biophysical Journal(2025)10.1016/j.bpj.2025.03.016

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0DataRank · unranked

1 citations

Agbo-oma Uwakweh, Xun Li, Ahmad Karanji, Stephen W. Hoag, Daniel Deredge +2 more