Steven Weaver

Also affiliated with University of California San Diego, Instituto Nacional de Enfermedades Respiratorias, Temple University

Biochemistry, Genetics and Molecular BiologyMedicineEnvironmental ScienceImmunology and MicrobiologyAgricultural and Biological Sciences

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 21 papers. Top paper: “Minus the Error: Testing for Positive Selection in the Presence of Residual Alignment Errors”.

Minus the Error: Testing for Positive Selection in the Presence of Residual Alignment Errors

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.13.620707

N/A

0.366DataRank · unranked

9 citations

Nathan L Clark, Timothy B. Sackton, Spencer V. Muse, Alexander G. Lucaci, Steven Weaver +4 more

No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics

PLoS Pathogens(2020)10.1371/journal.ppat.1008643

N/A

0DataRank · unranked

34 citations

Marius van den Beek, Daniel Blankenberg, Dave Bouvier, John Chilton, Nate Coraor +13 more

Natural selection in the evolution of SARS-CoV-2 in bats, not humans, created a highly capable human pathogen

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.28.122366

N/A

0DataRank · unranked

41 citations

Spyros Lytras, Steven Weaver, Joshua B. Singer, Maciej F. Boni, Philippe Lemey +3 more

An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.24.311845

N/A

0DataRank · unranked

22 citations

Qiqing Tao, Steven Weaver, Maxwell Sanderford, Marcos A. Caraballo‐Ortiz, Sudip Sharma +3 more

Contrast-FEL – a test for differences in selective pressures at individual sites among clades and sets of branches

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.13.091363

N/A

0DataRank · unranked

9 citations

Sadie R Wisotsky, Ananías A. Escalante, Brittany Rife Magalis, Steven Weaver, Sergei L. Kosakovsky Pond

Extra base hits: widespread empirical support for instantaneous multiple-nucleotide changes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.13.091652

N/A

0DataRank · unranked

4 citations

Sadie R Wisotsky, Stephen D. Shank, Steven Weaver, Sergei L. Kosakovsky Pond, Alexander G. Lucaci

The emergence and ongoing convergent evolution of the SARS-CoV-2 N501Y lineages

Cell(2021)10.1016/j.cell.2021.09.003

N/A

0DataRank · unranked

276 citations

Steven Weaver, Houriiyah Tegally, James Emmanuel San, Stephen D. Shank, Eduan Wilkinson +17 more

Natural selection in the evolution of SARS-CoV-2 in bats created a generalist virus and highly capable human pathogen

PLoS Biology(2021)10.1371/journal.pbio.3001115

N/A

0DataRank · unranked

224 citations

Spyros Lytras, Steven Weaver, Joshua B. Singer, Maciej F. Boni, Philippe Lemey +3 more

HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens

Cell Host & Microbe(2021)10.1016/j.chom.2021.05.012

N/A

0DataRank · unranked

115 citations

Elena Giorgi, Srirupa Chakraborty, Kien Nguyen, Tanmoy Bhattacharya, James Theiler +51 more

An Evolutionary Portrait of the Progenitor SARS-CoV-2 and Its Dominant Offshoots in COVID-19 Pandemic

Molecular Biology and Evolution(2021)10.1093/molbev/msab118

N/A

0DataRank · unranked

81 citations

Qiqing Tao, Steven Weaver, Maxwell Sanderford, Marcos A. Caraballo‐Ortiz, Sudip Sharma +3 more

Extra base hits: Widespread empirical support for instantaneous multiple-nucleotide changes

PLoS ONE(2021)10.1371/journal.pone.0248337

N/A

0DataRank · unranked

37 citations

Sadie R Wisotsky, Stephen D. Shank, Steven Weaver, Sergei L. Kosakovsky Pond, Alexander G. Lucaci

TopHap: Rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.13.472454

N/A

0DataRank · unranked

2 citations

Sayaka Miura, Maxwell Sanderford, Tenzin Dolker, Qiqing Tao, Steven Weaver +3 more

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa

Nature(2022)10.1038/s41586-022-04411-y

N/A

0DataRank · unranked

1910 citations

Sikhulile Moyo, Daniel G. Amoako, Houriiyah Tegally, Cathrine Scheepers, Christian L. Althaus +94 more

Emergence of SARS-CoV-2 Omicron lineages BA.4 and BA.5 in South Africa

Nature Medicine(2022)10.1038/s41591-022-01911-2

N/A

0DataRank · unranked

697 citations

Monika Moir, Josie Everatt, Marta Giovanetti, Cathrine Scheepers, Eduan Wilkinson +90 more

Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function

Molecular Biology and Evolution(2022)10.1093/molbev/msac061

N/A

0DataRank · unranked

123 citations

Spyros Lytras, Alexander G. Lucaci, Wolfgang Maier, Björn Grüning, Stephen D. Shank +33 more

Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa

Nature(2022)10.1038/d41586-021-03832-5

N/A

0DataRank · unranked

73 citations

Sikhulile Moyo, Daniel G. Amoako, Houriiyah Tegally, Cathrine Scheepers, Christian L. Althaus +94 more

TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity

Bioinformatics(2022)10.1093/bioinformatics/btac186

N/A

0DataRank · unranked

11 citations

Sayaka Miura, Maxwell Sanderford, Tenzin Dolker, Qiqing Tao, Steven Weaver +3 more

Viral genome sequence datasets display pervasive evidence of strand-specific substitution biases that are best described using non-reversible nucleotide substitution models

eLife(2023)10.7554/elife.87361

N/A

0DataRank · unranked

0 citations

Penelope Hartnady, Wimbai Caroline Mandikumba, Kayleigh D. Rutherford, Christopher Brian Currin, Florence Phelanyane +5 more

AUTO-TUNE: selecting the distance threshold for inferring HIV transmission clusters

Frontiers in Bioinformatics(2024)10.3389/fbinf.2024.1400003

N/A

0DataRank · unranked

5 citations

Vanessa M. Dávila Conn, Daniel Ji, Hannah Verdonk, Santiago Ávila‐Ríos, Andrew Brown +3 more

Contrast-FEL—A Test for Differences in Selective Pressures at Individual Sites among Clades and Sets of Branches

Molecular Biology and Evolution(2020)10.1093/molbev/msaa263

N/A

0DataRank · unranked

70 citations

Sadie R Wisotsky, Ananías A. Escalante, Brittany Rife Magalis, Steven Weaver, Sergei L. Kosakovsky Pond

AUTO-TUNE: SELECTING THE DISTANCE THRESHOLD FOR INFERRING HIV TRANSMISSION CLUSTERS

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.11.584522

N/A

0DataRank · unranked

1 citations

Vanessa Dávila‐Conn, Daniel Ji, Hannah Verdonk, Santiago Ávila‐Ríos, Andrew Brown +3 more