Patrick D. Schloss

Biochemistry, Genetics and Molecular BiologyEnvironmental ScienceMedicineNeuroscience

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

32.5Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

Papers

Driven by 42 papers — median percentile 97. Top paper: “A global reference for human genetic variation”.

A global reference for human genetic variation

Nature(2015)10.1038/nature15393

Top 1%

10.6DataRank

Top 1%20166 citations

Gonçalo R. Abecasis, Richard M. Durbin, Panagiotis Deloukas, Aravinda Chakravarti, Peter Donnelly +516 more

A framework for human microbiome research

Nature(2012)10.1038/nature11209

Top 2%

8.4DataRank

Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

Nature Biotechnology(2011)10.1038/nbt.1823

Top 3%

6.9DataRank

Top 3%815 citations

Renzo Kottmann, Dawn Field, Rob Knight, James R. Cole, Linda Amaral-Zettler +112 more

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Applied and Environmental Microbiology(2009)10.1128/aem.01541-09

N/A

1.5DataRank · unranked

21605 citations

Sarah L. Westcott, Thomas Ryabin, Justine R. Hall, Martin Hartmann, Emily B. Hollister +10 more

Structure, function and diversity of the healthy human microbiome

Nature(2012)10.1038/nature11234

N/A

1.4DataRank · unranked

10088 citations

Curtis Huttenhower, Dirk Gevers, Rob Knight, Sahar Abubucker, Jonathan H. Badger +235 more

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

Applied and Environmental Microbiology(2013)10.1128/aem.01043-13

N/A

1.3DataRank · unranked

7478 citations

Sarah L. Westcott, Nielson T. Baxter, Sarah K. Highlander, Patrick D. Schloss, James J. Kozich

Reporting guidelines for human microbiome research: the STORMS checklist

Nature Medicine(2021)10.1038/s41591-021-01552-x

N/A

0.918DataRank · unranked

454 citations

Audrey Renson, Genomic Standards Consortium, Cesare Furlanello, Shaimaa Elsafoury, Ludwig Geistlinger +98 more

Coding-Complete RNA Virus Genomes Assembled from Murine Cecal Metatranscriptomes

Microbiology Resource Announcements(2020)10.1128/mra.00018-20

Top 58%

0.272DataRank

Top 58%3 citations

Andrew J Beaudoin, Patrick D. Schloss, Joshua M. A. Stough

OptiFit: an Improved Method for Fitting Amplicon Sequences to Existing OTUs

mSphere(2022)10.1128/msphere.00916-21

N/A

0.269DataRank · unranked

5 citations

Sarah L. Westcott, Michael B. Mumphrey, Gabrielle A. Dotson, Patrick D. Schloss, Kelly L. Sovacool

Developing and deploying an integrated workshop curriculum teaching computational skills for reproducible research

Journal of Open Source Education(2022)10.21105/jose.00144

N/A

0.241DataRank · unranked

4 citations

Kelly L. Sovacool, Nick Lesniak, Dana King, Catherine Barnier, Matthew Flickinger +11 more

The gut bacterial community potentiates Clostridioides difficile infection severity

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.31.478599

N/A

0.165DataRank · unranked

2 citations

Alyxandria M. Schubert, Kaitlyn J. Flynn, Jhansi L. Leslie, Hamide Sinani, Ingrid L. Bergin +3 more

Increased Akkermansia abundance is associated with increased colonic mucosal ω-3 fatty acids and decreased colonic mucosal PGE 2 concentrations following healthy dietary pattern interventions

medRxiv(2021)10.1101/2021.10.11.21264748

N/A

0DataRank · unranked

3 citations

Ananda Sen, D. Kim Turgeon, Rena Chan, Mack T. Ruffin, Dean E. Brenner +3 more

An osmotic laxative renders mice susceptible to prolonged Clostridioides difficile colonization and hinders clearance

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.13.452287

N/A

0DataRank · unranked

0 citations

Ana Taylor, Jacob King, Joanna Colovas, Lucas Bishop, Kathryn McBride +5 more

A Goldilocks Principle for the Gut Microbiome: Taxonomic Resolution Matters for Microbiome-Based Classification of Colorectal Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.22.465538

N/A

0DataRank · unranked

0 citations

Begüm D. Topçuoğlu, Andrea Garretto, Patrick D. Schloss, Courtney R. Armour

The Gut Bacterial Community Potentiates Clostridioides difficile Infection Severity

mBio(2022)10.1128/mbio.01183-22

N/A

0DataRank · unranked

45 citations

Alyxandria M. Schubert, Kaitlin J. Flynn, Jhansi L. Leslie, Hamide Sinani, Ingrid L. Bergin +3 more

A Goldilocks Principle for the Gut Microbiome: Taxonomic Resolution Matters for Microbiome-Based Classification of Colorectal Cancer

mBio(2022)10.1128/mbio.03161-21

N/A

0DataRank · unranked

39 citations

Begüm D. Topçuoğlu, Andrea Garretto, Patrick D. Schloss, Courtney R. Armour

Diluted Fecal Community Transplant Restores Clostridioides difficile Colonization Resistance to Antibiotic-Perturbed Murine Communities

mBio(2022)10.1128/mbio.01364-22

N/A

0DataRank · unranked

6 citations

Sarah Tomkovich, Andrew Henry, Ana Taylor, Joanna Colovas, Lucas Bishop +3 more

Intestinal inflammation reversibly alters the microbiota to drive susceptibility to Clostridioides difficile colonization in a mouse model of colitis

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.07.487579

N/A

0DataRank · unranked

0 citations

Kelly L. Sovacool, Lisa Abernathy‐Close, Kimberly C. Vendrov, Alexandra K. Standke, Ingrid L. Bergin +3 more

Simplified fecal community transplant restores Clostridioides difficile colonization resistance to antibiotic perturbed murine communities

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.11.491589

N/A

0DataRank · unranked

0 citations

Sarah Tomkovich, Andrew Henry, Ana Taylor, Joanna Colovas, Lucas Bishop +3 more

Machine learning classification by fitting amplicon sequences to existing OTUs

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.01.506299

N/A

0DataRank · unranked

0 citations

Kelly L. Sovacool, William L. Close, Begüm D. Topçuoğlu, Jenna Wiens, Patrick D. Schloss +1 more

Waste not, want not: revisiting the analysis that called into question the practice of rarefaction

mSphere(2023)10.1128/msphere.00355-23

N/A

0DataRank · unranked

75 citations

Patrick D. Schloss

Serotonin is a common thread linking different classes of antidepressants

Cell chemical biology(2023)10.1016/j.chembiol.2023.10.009

N/A

0DataRank · unranked

16 citations

Sergio Mena, Jordan Holmes, Melinda Hersey, Anna Marie Buchanan, Brenna Parke +12 more

Machine learning classification by fitting amplicon sequences to existing OTUs

mSphere(2023)10.1128/msphere.00336-23

N/A

0DataRank · unranked

5 citations

Kelly L. Sovacool, William L. Close, Begüm D. Topçuoğlu, Jenna Wiens, Patrick D. Schloss +1 more

Rarefaction is currently the best approach to control for uneven sequencing effort in amplicon sequence analyses

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.23.546313

N/A

0DataRank · unranked

31 citations

Patrick D. Schloss

Serotonin is a Common Thread Linking Different Classes of Antidepressants

Research Square(2023)10.21203/rs.3.rs-2741902/v1

N/A

0DataRank · unranked

2 citations

Sergio Mena, Jordan Holmes, Melinda Hersey, Anna Marie Buchanan, Brenna Parke +12 more

Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?

arXiv (Cornell University)(2023)10.48550/arxiv.2306.03255

N/A

0DataRank · unranked

2 citations

Andrei A. Ivanov, John Chamberlin, David A. Hanauer, Candace L. Savonen, Mary J. Goldman +22 more

Rarefaction is currently the best approach to control for uneven sequencing effort in amplicon sequence analyses

mSphere(2024)10.1128/msphere.00354-23

N/A

0DataRank · unranked

182 citations

Patrick D. Schloss

Best practices to evaluate the impact of biomedical research software—metric collection beyond citations

Bioinformatics(2024)10.1093/bioinformatics/btae469

N/A

0DataRank · unranked

6 citations

Andrei A. Ivanov, John Chamberlin, David A. Hanauer, Candace L. Savonen, M Goldman +22 more

mpactR: an R adaptation of the metabolomics peak analysis computational tool (MPACT) for use in reproducible data analysis pipelines

Microbiology Resource Announcements(2025)10.1128/mra.00997-24

N/A

0DataRank · unranked

5 citations

Gregory Johnson, Joseph M. Krampen, Jennifer N. T. Nguyen, Marcy J. Balunas, Patrick D. Schloss +1 more

clustur: an R package for clustering features using sparse distance matrices

Microbiology Resource Announcements(2025)10.1128/mra.01238-24

N/A

0DataRank · unranked

0 citations

Sarah L. Westcott, Patrick D. Schloss, Gregory Johnson

Gut Microbiota Modulate CD8 T Cell Responses to Influence Colitis-Associated Tumorigenesis

Cell Reports(2020)10.1016/j.celrep.2020.03.035

N/A

0DataRank · unranked

178 citations

Lili Zhao, Kathryn A. Eaton, Sharon L. Ho, Jiachen Chen, Sara Poe +11 more

A Framework for Effective Application of Machine Learning to Microbiome-Based Classification Problems

mBio(2020)10.1128/mbio.00434-20

N/A

0DataRank · unranked

265 citations

Nicholas A. Lesniak, Mack T. Ruffin, Jenna Wiens, Patrick D. Schloss, Begüm D. Topçuoğlu

Ten simple rules to increase computational skills among biologists with Code Clubs

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008119

N/A

0DataRank · unranked

12 citations

Nicholas A. Lesniak, Marcy J. Balunas, Lucas Bishop, William L. Close, Matthew K. Doherty +15 more

The Initial Gut Microbiota and Response to Antibiotic Perturbation Influence Clostridioides difficile Clearance in Mice

mSphere(2020)10.1128/msphere.00869-20

N/A

0DataRank · unranked

28 citations

Joshua M. A. Stough, Lucas Bishop, Patrick D. Schloss, Sarah Tomkovich

Removal of rare amplicon sequence variants from 16S rRNA gene sequence surveys biases the interpretation of community structure data

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.11.422279

N/A

0DataRank · unranked

25 citations

Patrick D. Schloss

The initial gut microbiota and response to antibiotic perturbation influence Clostridioides difficile colonization in mice

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.27.271304

N/A

0DataRank · unranked

0 citations

Joshua M. A. Stough, Lucas Bishop, Patrick D. Schloss, Sarah Tomkovich

Clearance of Clostridioides difficile colonization is associated with antibiotic-specific bacterial changes

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.16.386086

N/A

0DataRank · unranked

0 citations

Alyxandria M. Schubert, Hamide Sinani, Patrick D. Schloss, Nicholas A. Lesniak

Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters

mSphere(2021)10.1128/msphere.00191-21

N/A

0DataRank · unranked

190 citations

Patrick D. Schloss

Association of bacterial community types, functional microbial processes and lung disease in cystic fibrosis airways

The ISME Journal(2021)10.1038/s41396-021-01129-z

N/A

0DataRank · unranked

43 citations

Jiangchao Zhao, Lisa A. Carmody, Qingyang Zhang, Linda M. Kalikin, Patrick D. Schloss +2 more

Clearance of Clostridioides difficile Colonization Is Associated with Antibiotic-Specific Bacterial Changes

mSphere(2021)10.1128/msphere.01238-20

N/A

0DataRank · unranked

27 citations

Alyxandria M. Schubert, Hamide Sinani, Patrick D. Schloss, Nicholas A. Lesniak

An Osmotic Laxative Renders Mice Susceptible to Prolonged Clostridioides difficile Colonization and Hinders Clearance

mSphere(2021)10.1128/msphere.00629-21

N/A

0DataRank · unranked

25 citations

Ana Taylor, Jacob King, Joanna Colovas, Lucas Bishop, Kathryn McBride +5 more

Patrick D. Schloss

Indexed papers

Top data-sharing exemplar

Papers