Caroline Uhler

Also affiliated with IIT@MIT, Decision Systems (United States), Massachusetts Institute of Technology

Computer ScienceBiochemistry, Genetics and Molecular BiologyMathematics

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 29 papers. Top paper: “Systematically characterizing the roles of E3-ligase family members in inflammatory responses with massively parallel Perturb-seq”.

Systematically characterizing the roles of E3-ligase family members in inflammatory responses with massively parallel Perturb-seq

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.23.525198

N/A

0.836DataRank · unranked

23 citations

Basak Eraslan, Olena Kuksenko, Kushal K. Dey, Karthik A. Jagadeesh, Pratiksha I. Thakore +18 more

Cross-modal autoencoder framework learns holistic representations of cardiovascular state

Nature Communications(2023)10.1038/s41467-023-38125-0

N/A

0.670DataRank · unranked

86 citations

Sam Friedman, Shaan Khurshid, Kenney Ng, Puneet Batra, Steven A. Lubitz +3 more

Graph-based autoencoder integrates spatial transcriptomics with chromatin images and identifies joint biomarkers for Alzheimer’s disease

Nature Communications(2022)10.1038/s41467-022-35233-1

N/A

0.639DataRank · unranked

70 citations

Xiao Wang, G. V. Shivashankar, Caroline Uhler, Xinyi Zhang

Unsupervised representation learning of chromatin images identifies changes in cell state and tissue organization in DCIS

Nature Communications(2024)10.1038/s41467-024-50285-1

N/A

0.566DataRank · unranked

13 citations

Saradha Venkatachalapathy, Daniel Paysan, Paulina Schaerer, Claudio Tripodo, Caroline Uhler +2 more

Unsupervised Protein-Ligand Binding Energy Prediction via Neural Euler's Rotation Equation

PubMed(2023)10.48550/arxiv.2301.10814

N/A

0.290DataRank · unranked

4 citations

Siranush Sarkizova, Xun Chen, Nir Hacohen, Caroline Uhler, Wengong Jin

Building a two-way street between cell biology and machine learning

Nature Cell Biology(2024)10.1038/s41556-023-01279-6

N/A

0.241DataRank · unranked

4 citations

Caroline Uhler

Efficiently quantifying dependence in massive scientific datasets using InterDependence Scores

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2509860122

N/A

0.165DataRank · unranked

2 citations

Yajit Jain, Caroline Uhler, Eric S. Lander, Adityanarayanan Radhakrishnan

Learning Genetic Perturbation Effects with Variational Causal Inference

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.05.657988

N/A

0.104DataRank · unranked

1 citations

Jiaqi Zhang, Caroline Uhler, Emily Liu

Removing Biases from Molecular Representations via Information Maximization

PubMed(2023)10.48550/arxiv.2312.00718

N/A

0DataRank · unranked

3 citations

Sharut Gupta, Caroline Uhler, Tommi Jaakkola, Chenyu Wang

Positivity in Linear Gaussian Structural Equation Models

arXiv (Cornell University)(2023)10.48550/arxiv.2305.19884

N/A

0DataRank · unranked

0 citations

Jan-Christian Hütter, Caroline Uhler, Piotr Zwiernik, Asad Lodhia

Meek Separators and Their Applications in Targeted Causal Discovery

arXiv (Cornell University)(2023)10.48550/arxiv.2310.20075

N/A

0DataRank · unranked

0 citations

Jiaqi Zhang, Caroline Uhler, Kirankumar Shiragur

Synthetic Lethality Screening with Recursive Feature Machines

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.03.569803

N/A

0DataRank · unranked

0 citations

Adityanarayanan Radhakrishnan, Caroline Uhler, Cathy Cai

Adhesome Receptor Clustering is Accompanied by the Co- localization of the Associated Genes in the Cell Nucleus

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.07.570697

N/A

0DataRank · unranked

0 citations

Caroline Uhler, G. V. Shivashankar, Louis V. Cammarata

Transfer Learning with Kernel Methods

Nature Communications(2023)10.1038/s41467-023-41215-8

N/A

0DataRank · unranked

29 citations

Max Ruiz Luyten, Neha Prasad, Caroline Uhler, Adityanarayanan Radhakrishnan

DCI: learning causal differences between gene regulatory networks

Bioinformatics(2021)10.1093/bioinformatics/btab167

N/A

0DataRank · unranked

24 citations

Chandler Squires, Caroline Uhler, Anastasiya Belyaeva

Causal Discovery with Fewer Conditional Independence Tests

arXiv (Cornell University)(2024)10.48550/arxiv.2406.01823

N/A

0DataRank · unranked

1 citations

Jiaqi Zhang, Caroline Uhler, Kirankumar Shiragur

Causal Imputation for Counterfactual SCMs: Bridging Graphs and Latent Factor Models

arXiv (Cornell University)(2024)10.48550/arxiv.2402.14777

N/A

0DataRank · unranked

0 citations

Chandler Squires, Caroline Uhler, Alvaro Ribot

Membership Testing in Markov Equivalence Classes via Independence Query Oracles

arXiv (Cornell University)(2024)10.48550/arxiv.2403.05759

N/A

0DataRank · unranked

0 citations

Kirankumar Shiragur, Caroline Uhler, Jiaqi Zhang

Synthetic Potential Outcomes and Causal Mixture Identifiability

arXiv (Cornell University)(2024)10.48550/arxiv.2405.19225

N/A

0DataRank · unranked

0 citations

Chandler Squires, Caroline Uhler, Bijan Mazaheri

Identifiability Guarantees for Causal Disentanglement from Purely Observational Data

arXiv (Cornell University)(2024)10.48550/arxiv.2410.23620

N/A

0DataRank · unranked

0 citations

Jiaqi Zhang, Caroline Uhler, Ryan Welch

An Information Criterion for Controlled Disentanglement of Multimodal Data

arXiv (Cornell University)(2024)10.48550/arxiv.2410.23996

N/A

0DataRank · unranked

0 citations

Sharut Gupta, Xinyi Zhang, Sana Tonekaboni, Stefanie Jegelka, Tommi Jaakkola +2 more

Prediction of protein subcellular localization in single cells

Nature Methods(2025)10.1038/s41592-025-02696-1

N/A

0DataRank · unranked

19 citations

Yitong Tseo, Yunhao Bai, Fei Chen, Caroline Uhler, Xinyi Zhang

Integrating representation learning, permutation, and optimization to detect lineage-related gene expression patterns

Nature Communications(2025)10.1038/s41467-025-56388-7

N/A

0DataRank · unranked

5 citations

Caroline Uhler, Hannah M. Schlüter

A Representation Fusion Framework for Decoupling Diagnostic Information in Multimodal Learning

npj Digital Medicine(2025)10.1038/s41746-025-02144-6

N/A

0DataRank · unranked

2 citations

Sam Friedman, Xinyi Zhang, Mahnaz Maddah, Caroline Uhler, Sana Tonekaboni

Image2Reg: Linking chromatin images to gene regulation using genetic and chemical perturbation screens

Cell Systems(2025)10.1016/j.cels.2025.101293

N/A

0DataRank · unranked

0 citations

Adityanarayanan Radhakrishnan, Xinyi Zhang, G V Shivashankar, Caroline Uhler, Daniel Paysan

Meta-Dependence in Conditional Independence Testing

arXiv (Cornell University)(2025)10.48550/arxiv.2504.12594

N/A

0DataRank · unranked

0 citations

Jiaqi Zhang, Caroline Uhler, Bijan Mazaheri

Identifiability Guarantees for Causal Disentanglement from Soft Interventions

arXiv (Cornell University)(2023)10.48550/arxiv.2307.06250

N/A

0DataRank · unranked

9 citations

Chandler Squires, Kristjan Greenewald, Akash Srivastava, Shanmugam, Karthikeyan, Caroline Uhler +1 more

Prediction of protein subcellular localization in single cells

Discovery(2025)10.17867/10000209

N/A

0DataRank · unranked

0 citations

Fei Chen, Caroline Uhler, Bai, Yunhao

Unpaired Multi-Domain Causal Representation Learning

arXiv (Cornell University)(2023)10.48550/arxiv.2302.00993

N/A

0DataRank · unranked

9 citations

Chandler Squires, Mathias Drton, Caroline Uhler, Nils Sturma