Jeffrey B. Joy

Also affiliated with AIDS Vancouver, Institute of Bioinformatics

Immunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.241Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Canadian VirusSeq Data Portal and Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology

Microbial Genomics(2024)10.1099/mgen.0.001293

Top 61%

0.241DataRank

Top 61%4 citations

Baofeng Jia, Carmen Lía Murall, Raphaël Poujol, Muhammad Zohaib Anwar, Nithu Sara John +62 more

Papers

Driven by 19 papers — median percentile 39. Top paper: “HIV reservoirs are dominated by genetically younger and clonally enriched proviruses”.

HIV reservoirs are dominated by genetically younger and clonally enriched proviruses

mBio(2023)10.1128/mbio.02417-23

N/A

0.580DataRank · unranked

19 citations

Aniqa Shahid, Winnie Dong, Don Kirkby, Bradley R. Jones, Charlotte Johanna Beelen +12 more

HIV reservoirs are dominated by genetically younger and clonally enriched proviruses

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.12.536611

N/A

0.292DataRank · unranked

6 citations

Aniqa Shahid, Winnie Dong, Don Kirkby, Bradley R. Jones, Charlotte Johanna Beelen +12 more

The Canadian VirusSeq Data Portal and Duotang: open resources for SARS-CoV-2 viral sequences and genomic epidemiology

Microbial Genomics(2024)10.1099/mgen.0.001293

Top 61%

0.241DataRank

Top 61%4 citations

Baofeng Jia, Carmen Lía Murall, Raphaël Poujol, Muhammad Zohaib Anwar, Nithu Sara John +62 more

Inferring Human Immunodeficiency Virus 1 Proviral Integration Dates With Bayesian Inference

Molecular Biology and Evolution(2023)10.1093/molbev/msad156

N/A

0.218DataRank · unranked

3 citations

Jeffrey B. Joy, Bradley R. Jones

HIV proviral genetic diversity, compartmentalization and inferred dynamics in lung and blood during long-term suppressive antiretroviral therapy

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.26.493568

N/A

0.104DataRank · unranked

1 citations

Bradley R. Jones, Julia Yang, Winnie Dong, Tawimas Shaipanich, Kathryn Donohoe +5 more

Proviral Turnover During Untreated HIV Infection Is Dynamic and Variable Between Hosts, Impacting Reservoir Composition on ART

Frontiers in Microbiology(2021)10.3389/fmicb.2021.719153

N/A

0DataRank · unranked

18 citations

F. Harrison Omondi, Richard Liang, Hanwei Sudderuddin, Bradley R. Jones, Jeffrey B. Joy +4 more

Intra-host evolutionary dynamics of the hepatitis C virus among people who inject drugs

Scientific Reports(2021)10.1038/s41598-021-88132-8

N/A

0DataRank · unranked

4 citations

A Howe, Weiyan Dong, Winnie Dong, Chanson J. Brumme, Andrea D. Olmstead +4 more

HIV Phylogenetics Reveals Overlapping Transmission Networks among Cities and Key Populations in Pakistan

medRxiv(2021)10.1101/2021.12.14.21267743

N/A

0DataRank · unranked

3 citations

François Cholette, Yann Pelcat, Aaron G. Lim, Peter Vickerman, Adiba Hassan +12 more

HIV proviral burden, genetic diversity, and dynamics in viremic controllers who subsequently initiated suppressive antiretroviral therapy

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.29.437632

N/A

0DataRank · unranked

0 citations

Hanwei Sudderuddin, Aniqa Shahid, Natalie N. Kinloch, Bradley R. Jones, Rachel L. Miller +10 more

HIV proviral genetic diversity, compartmentalization and inferred dynamics in lung and blood during long-term suppressive antiretroviral therapy

PLoS Pathogens(2022)10.1371/journal.ppat.1010613

N/A

0DataRank · unranked

11 citations

Bradley R. Jones, J.S.W. Yang, Winnie Dong, Tawimas Shaipanich, Kathryn Donohoe +5 more

The replication-competent HIV reservoir is a genetically restricted, younger subset of the overall pool of HIV proviruses persisting during therapy, which is highly genetically stable over time

Research Square(2023)10.21203/rs.3.rs-3259040/v1

N/A

0DataRank · unranked

4 citations

Signe MacLennan, Bradley R. Jones, Hanwei Sudderuddin, Zhong Dang, Kyle D. Cobarrubias +17 more

The replication-competent HIV reservoir is a genetically restricted, younger subset of the overall pool of HIV proviruses persisting during therapy, which is highly genetically stable over time

Journal of Virology(2024)10.1128/jvi.01655-23

N/A

0DataRank · unranked

17 citations

Signe MacLennan, Bradley R. Jones, Hanwei Sudderuddin, Zhong Dang, Kyle D. Cobarrubias +48 more

A simple phylogenetic approach to analyze hypermutated HIV proviruses reveals insights into their dynamics and persistence during antiretroviral therapy

Virus Evolution(2024)10.1093/ve/veae094

N/A

0DataRank · unranked

4 citations

Bradley R. Jones, Maggie C. Duncan, Signe MacLennan, Michael J. Dapp, Mark H. Kuniholm +11 more

The emergence of SARS-CoV-2 in Europe and North America

Science(2020)10.1126/science.abc8169

N/A

0DataRank · unranked

429 citations

Jonathan E. Pekar, Brendan B. Larsen, Martha I. Nelson, Verity Hill, Jeffrey B. Joy +5 more

A simple phylogenetic approach to analyze hypermutated HIV proviruses reveals insights into their dynamics and persistence during antiretroviral therapy

UNC Libraries(2024)10.17615/afve-z661

N/A

0DataRank · unranked

0 citations

Mark H. Kuniholm, Aniqa Shahid, Bradley E. Aouizerat, Igho Ofotokun, Jeffrey B. Joy +11 more

HIV-1 variants are archived throughout infection and persist in the reservoir

PLoS Pathogens(2020)10.1371/journal.ppat.1008378

N/A

0DataRank · unranked

59 citations

Bradley R. Jones, Darío Dilernia, Daniel J. Wilkins, Daniel T. Claiborne, Samantha McInally +7 more

Simulating within host human immunodeficiency virus 1 genome evolution in the persistent reservoir

Virus Evolution(2020)10.1093/ve/veaa089

N/A

0DataRank · unranked

9 citations

Jeffrey B. Joy, Bradley R. Jones

Longitudinal within-host evolution of HIV Nef-mediated CD4, HLA and SERINC5 downregulation activity: a case study

Retrovirology(2020)10.1186/s12977-019-0510-1

N/A

0DataRank · unranked

13 citations

Natalie N. Kinloch, Steven W. Jin, Rachel L. Miller, Bradley R. Jones, Chanson J. Brumme +4 more

HIV Proviral Burden, Genetic Diversity, and Dynamics in Viremic Controllers Who Subsequently Initiated Suppressive Antiretroviral Therapy

mBio(2021)10.1128/mbio.02490-21

N/A

0DataRank · unranked

21 citations

Hanwei Sudderuddin, Aniqa Shahid, Natalie N. Kinloch, Bradley R. Jones, Rachel L. Miller +10 more

Jeffrey B. Joy

Indexed papers

Top data-sharing exemplar

Papers