Xuhui Huang

Biochemistry, Genetics and Molecular BiologyChemistry

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 19 papers. Top paper: “Remdesivir, lopinavir, emetine, and homoharringtonine inhibit SARS-CoV-2 replication in vitro”.

Remdesivir, lopinavir, emetine, and homoharringtonine inhibit SARS-CoV-2 replication in vitro

Antiviral Research(2020)10.1016/j.antiviral.2020.104786

N/A

1.0DataRank · unranked

969 citations

Alvina Y. L. Wong, Prathanporn Kaewpreedee, Sin Fun Sia, Dongdong Chen, Kenrie Pui Yan Hui +7 more

Microsecond timescale MD simulations at the transition state of Pm HMGR predict remote allosteric residues

Chemical Science(2021)10.1039/d1sc00102g

N/A

0DataRank · unranked

11 citations

C.N. Steussy, Brandon E. Haines, Jinping Lei, Wei Wang, Fu Kit Sheong +6 more

Nucleotide addition and cleavage by RNA polymerase II: Coordination of two catalytic reactions using a single active site

Journal of Biological Chemistry(2022)10.1016/j.jbc.2022.102844

N/A

0DataRank · unranked

19 citations

Eshani C. Goonetilleke, Dong Wang, Xuhui Huang, Ilona Christy Unarta

Ultrahigh-Throughput Directed Evolution of Polymer-Degrading Enzymes Using Yeast Display

Journal of the American Chemical Society(2023)10.1021/jacs.3c08291

N/A

0DataRank · unranked

46 citations

Maxwell J. Unger, Ilona Christy Unarta, Ashley N. Ogorek, Xuhui Huang, Jeffrey D. Martell +1 more

Integrative generalized master equation: A method to study long-timescale biomolecular dynamics via the integrals of memory kernels

The Journal of Chemical Physics(2023)10.1063/5.0167287

N/A

0DataRank · unranked

32 citations

Yunrui Qiu, Michael L. Kalin, Xuhui Huang, Siqin Cao

An Efficient Path Classification Algorithm Based on Variational Autoencoder to Identify Metastable Path Channels for Complex Conformational Changes

Journal of Chemical Theory and Computation(2023)10.1021/acs.jctc.3c00318

N/A

0DataRank · unranked

29 citations

Michael S. O’Connor, Mingyi Xue, Bojun Liu, Xuhui Huang, Yunrui Qiu

Disease mutations and phosphorylation alter the allosteric pathways involved in autoinhibition of protein phosphatase 2A

The Journal of Chemical Physics(2023)10.1063/5.0150272

N/A

0DataRank · unranked

16 citations

Cheng-Guo Wu, Yunrui Qiu, Vijaya Kumar Balakrishnan, Pankaj Singh Parihar, Michael S. O’Connor +3 more

B56δ long-disordered arms form a dynamic PP2A regulation interface coupled with global allostery and Jordan’s syndrome mutations

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2310727120

N/A

0DataRank · unranked

10 citations

Vijaya Kumar Balakrishnan, Ronald A. Merrill, Pankaj Singh Parihar, Kirill Konovolov, Yu‐Chia Chen +14 more

Tutorials on How to Build Non-Markovian Dynamic Models from Molecular Dynamics Simulations for Studying Protein Dynamics

ChemRxiv(2023)10.26434/chemrxiv-2023-kvsvl

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0DataRank · unranked

3 citations

Siqin Cao, Yunrui Qiu, Xuhui Huang, Yue Wu

Sub-millisecond Atomistic Simulations Reveal Hydrogen Bond-Driven Diffusion of a Guest Peptide in Protein-RNA Condensate

ChemRxiv(2023)10.26434/chemrxiv-2023-m6nc4

N/A

0DataRank · unranked

1 citations

Siqin Cao, Eshani C. Goonetilleke, Jiani Niu, Samuel H. Gellman, Xuhui Huang +1 more

Extended regulation interface coupled to the allosteric network and disease mutations in the PP2A-B56δ holoenzyme

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.09.530109

N/A

0DataRank · unranked

0 citations

Vijaya Kumar Balakrishnan, Pankaj Singh Parihar, Kirill Konovolov, Yu‐Chia Chen, Ronald A. Merrill +14 more

Tutorial on how to build non-Markovian dynamic models from molecular dynamics simulations for studying protein conformational changes

The Journal of Chemical Physics(2024)10.1063/5.0189429

N/A

0DataRank · unranked

22 citations

Siqin Cao, Yunrui Qiu, Xuhui Huang, Yue Wu

Information Bottleneck Approach for Markov Model Construction

Journal of Chemical Theory and Computation(2024)10.1021/acs.jctc.4c00449

N/A

0DataRank · unranked

21 citations

Yunrui Qiu, Eric R. Beyerle, Xuhui Huang, Pratyush Tiwary, Dedi Wang

Submillisecond Atomistic Molecular Dynamics Simulations Reveal Hydrogen Bond-Driven Diffusion of a Guest Peptide in Protein–RNA Condensate

The Journal of Physical Chemistry B(2024)10.1021/acs.jpcb.3c08126

N/A

0DataRank · unranked

15 citations

Siqin Cao, Eshani C. Goonetilleke, Jiani Niu, Samuel H. Gellman, Xuhui Huang +1 more

Exploring Transition States of Protein Conformational Changes via Out-of-Distribution Detection in the Hyperspherical Latent Space

ChemRxiv(2024)10.26434/chemrxiv-2024-r8gjv

N/A

0DataRank · unranked

3 citations

Jordan G. Boysen, Ilona Christy Unarta, Xuefeng Du, Yixuan Li, Xuhui Huang +1 more

Exploring transition states of protein conformational changes via out-of-distribution detection in the hyperspherical latent space

Nature Communications(2025)10.1038/s41467-024-55228-4

N/A

0DataRank · unranked

22 citations

Jordan G. Boysen, Ilona Christy Unarta, Xuefeng Du, Yixuan Li, Xuhui Huang +1 more

AMUSET-TICA: A Tensor-Based Approach for Identifying Slow Collective Variables in Biomolecular Dynamics

Journal of Chemical Theory and Computation(2025)10.1021/acs.jctc.5c00076

N/A

0DataRank · unranked

4 citations

Feliks Nüske, Bojun Liu, Micheline B. Soley, Xuhui Huang, Siqin Cao

Targeting Bacterial RNA Polymerase: Harnessing Simulations and Machine Learning to Design Inhibitors for Drug-Resistant Pathogens

Biochemistry(2025)10.1021/acs.biochem.4c00751

N/A

0DataRank · unranked

4 citations

Xuhui Huang, Eshani C. Goonetilleke

Role of Hsp70 chaperone in client-protein folding elucidated by Markov state modeling and NMR restraint-assisted molecular dynamics simulations

Biophysical Journal(2025)10.1016/j.bpj.2025.08.022

N/A

0DataRank · unranked

1 citations

Kirill A. Konovalov, Josephine L Duvall, Jinoh Jang, Yichong Lao, Silvia Cavagnero +2 more