🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Srirupa Chakraborty

Northeastern University

ORCID: 0000-0002-7155-2764

Biochemistry, Genetics and Molecular BiologyImmunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 12 papers. Top paper: “Network analysis uncovers the communication structure of SARS-CoV-2 spike protein identifying sites for immunogen design”.

Network analysis uncovers the communication structure of SARS-CoV-2 spike protein identifying sites for immunogen design

iScience(2022)10.1016/j.isci.2022.105855

N/A

0.434DataRank · unranked

17 citations

Srirupa Chakraborty, Rory Henderson, Robert J. Edwards, Rachael A. Mansbach, Kien Nguyen +7 more

Quantification of the Resilience and Vulnerability of HIV-1 Native Glycan Shield at Atomistic Detail

iScience(2020)10.1016/j.isci.2020.101836

N/A

0DataRank · unranked

25 citations

Zachary T. Berndsen, Nicolas Hengartner, Bette Korber, Andrew B. Ward, S. Gnanakaran +1 more

The SARS-CoV-2 Spike Variant D614G Favors an Open Conformational State

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.26.219741

N/A

0DataRank · unranked

69 citations

Srirupa Chakraborty, Kien Nguyen, David C. Montefiori, Bette Korber, S. Gnanakaran +1 more

HIV-1 and SARS-CoV-2: Patterns in the evolution of two pandemic pathogens

Cell Host & Microbe(2021)10.1016/j.chom.2021.05.012

N/A

0DataRank · unranked

115 citations

Elena Giorgi, Srirupa Chakraborty, Kien Nguyen, Tanmoy Bhattacharya, James Theiler +51 more

Development of Martini 2.2 parameters forN-glycans: a case study of the HIV-1 Env glycoprotein dynamics

Glycobiology(2021)10.1093/glycob/cwab017

N/A

0DataRank · unranked

18 citations

Kshitij Wagh, S. Gnanakaran, César A. López, Srirupa Chakraborty

Molecular insights into antibody-mediated protection against the prototypic simian immunodeficiency virus

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.22.473937

N/A

0DataRank · unranked

2 citations

Zachary T. Berndsen, Núria Pedreño-López, Alison Burns, Joel D. Allen, Shawn Barman +26 more

A neutralizing antibody target in early HIV-1 infection was recapitulated in rhesus macaques immunized with the transmitted/founder envelope sequence

PLoS Pathogens(2022)10.1371/journal.ppat.1010488

N/A

0DataRank · unranked

6 citations

Srirupa Chakraborty, Jie Yang, Anne Gleinich, Sailaja Gangadhara, Salar N. Khan +27 more

Molecular insights into antibody-mediated protection against the prototypic simian immunodeficiency virus

Nature Communications(2022)10.1038/s41467-022-32783-2

N/A

0DataRank · unranked

10 citations

Zachary T. Berndsen, Núria Pedreño-López, Alison Burns, Joel D. Allen, Shawn Barman +27 more

Structural and immunological characterization of the H3 influenza hemagglutinin during antigenic drift

Nature Communications(2025)10.1038/s41467-025-66375-7

N/A

0DataRank · unranked

3 citations

Ilhan Tomris, Charles A. Bowman, Eugene S. Stevens, Jason Kantorow, Corinna M. Plitt +14 more

Spatial charge-hydrophobicity configuration modulates cationic peptide transport in cartilage

Biophysical Journal(2025)10.1016/j.bpj.2025.09.023

N/A

0DataRank · unranked

4 citations

Timothy L. Boyer, Srirupa Chakraborty, Ambika G. Bajpayee, Bill Hakim

Visualization of the HIV-1 Env glycan shield across scales

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.2000260117

N/A

0DataRank · unranked

97 citations

Srirupa Chakraborty, Xiaoning Wang, Christopher A. Cottrell, Jonathan L. Torres, Jolene K. Diedrich +7 more

Cleaved versus Uncleaved: How furin cleavage reshapes the conformational landscape of SARS ‐ CoV ‐2 spike

Protein Science(2025)10.1002/pro.70368

N/A

0DataRank · unranked

0 citations

Raghavendran Suresh, Srirupa Chakraborty, Natesan Mani