Thomas Abeel

Also affiliated with Delft University of Technology

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 13 papers. Top paper: “Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement”.

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

PLoS ONE(2014)10.1371/journal.pone.0112963

N/A

1.4DataRank · unranked

10052 citations

Thomas Abeel, Terrance Shea, Margaret Priest, Amr Abouelliel, Sharadha Sakthikumar +7 more

Comparative analysis of mycobacterium and related actinomycetes yields insight into the evolution of mycobacterium tuberculosis pathogenesis

BMC Genomics(2012)10.1186/1471-2164-13-120

N/A

0.670DataRank · unranked

86 citations

Brian Weiner, Sang Park, Ilan Wapinski, Sahadevan Raman, Gregory Dolganov +21 more

QuantTB – a method to classify mixed Mycobacterium tuberculosis infections within whole genome sequencing data

BMC Genomics(2020)10.1186/s12864-020-6486-3

N/A

0DataRank · unranked

48 citations

Arlin Keo, Bruce J. Walker, Timothy J. Straub, Abigail L. Manson, Ashlee M. Earl +2 more

StrainGE: A toolkit to track and characterize low-abundance strains in complex microbial communities

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.14.431013

N/A

0DataRank · unranked

10 citations

Bruce J. Walker, Timothy J. Straub, Colin J. Worby, Alexandra Grote, Henry L. Schreiber +7 more

StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities

Genome biology(2022)10.1186/s13059-022-02630-0

N/A

0DataRank · unranked

112 citations

Bruce J. Walker, Timothy J. Straub, Colin J. Worby, Alexandra Grote, Henry L. Schreiber +7 more

Identification of HLA-E Binding Mycobacterium tuberculosis–Derived Epitopes through Improved Prediction Models

The Journal of Immunology(2022)10.4049/jimmunol.2200122

N/A

0DataRank · unranked

20 citations

Kees L. M. C. Franken, Krista E. van Meijgaarden, Marjolein van Wolfswinkel, Ian Derksen, Ferenc A. Scheeren +12 more

Global diversity of enterococci and description of 18 novel species

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.18.540996

N/A

0DataRank · unranked

11 citations

François Lebreton, Rauf Salamzade, Melissa J. Martin, Katharina Schaufler, Aysun Urhan +14 more

SAP: Synteny-aware gene function prediction for bacteria using protein embeddings

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.02.539034

N/A

0DataRank · unranked

1 citations

Bianca-Maria Cosma, Ashlee M. Earl, Abigail L. Manson, Thomas Abeel, Aysun Urhan

Global diversity of enterococci and description of 18 previously unknown species

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2310852121

N/A

0DataRank · unranked

45 citations

François Lebreton, Rauf Salamzade, Terrance Shea, Melissa J. Martin, Katharina Schaufler +16 more

SAFPred: synteny-aware gene function prediction for bacteria using protein embeddings

Bioinformatics(2024)10.1093/bioinformatics/btae328

N/A

0DataRank · unranked

6 citations

Bianca-Maria Cosma, Ashlee M. Earl, Abigail L. Manson, Thomas Abeel, Aysun Urhan

Fast and exact gap-affine partial order alignment with POASTA

Bioinformatics(2024)10.1093/bioinformatics/btae757

N/A

0DataRank · unranked

4 citations

Abigail L. Manson, Ashlee M. Earl, Kiran Garimella, Thomas Abeel, Lucas R. van Dijk

Circling in on plasmids: benchmarking plasmid detection and reconstruction tools for short-read data from diverse species

Briefings in Bioinformatics(2025)10.1093/bib/bbaf589

N/A

0DataRank · unranked

5 citations

Célia Souque, Colin J. Worby, Terrance Shea, Nicoletta Commins, Joshua T. Smith +5 more

Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic mice

Nature Microbiology(2020)10.1038/s41564-020-0683-3

N/A

0DataRank · unranked

102 citations

Wen‐Chi Chou, Abigail L. Manson, Peter Rogov, Thomas Abeel, James Bochicchio +8 more