Xiang Ji

Also affiliated with Iowa State University, Academy of Military Medical Sciences, National Engineering Research Center for Wheat, Wuhan Ship Development & Design Institute, Shandong Provincial QianFoShan Hospital, Liberal Arts University, Shandong First Medical University, Henan Agricultural University, Weifang University

Biochemistry, Genetics and Molecular BiologyMedicineEngineeringMathematics

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 28 papers. Top paper: “Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1”.

Genomic assessment of invasion dynamics of SARS-CoV-2 Omicron BA.1

Science(2023)10.1126/science.adg6605

N/A

1.3DataRank · unranked

70 citations

John T. McCrone, Ben Lambert, Sumali Bajaj, Rhys Inward, Paolo Bosetti +35 more

COVID-19: Epidemiology, Evolution, and Cross-Disciplinary Perspectives

Trends in Molecular Medicine(2020)10.1016/j.molmed.2020.02.008

N/A

0.987DataRank · unranked

720 citations

Wan-Ting He, Lifang Wang, Alexander Lai, Xiang Ji, Xiaofeng Zhai +7 more

BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference

Nature Methods(2025)10.1038/s41592-025-02751-x

N/A

0.960DataRank · unranked

72 citations

Xiang Ji, Gabriel W. Hassler, John T. McCrone, Yucai Shao, Zhenyu Zhang +6 more

Gradients Do Grow on Trees: A Linear-TimeO(N)-Dimensional Gradient for Statistical Phylogenetics

Molecular Biology and Evolution(2020)10.1093/molbev/msaa130

N/A

0.736DataRank · unranked

43 citations

Zhenyu Zhang, Andrew J. Holbrook, Akihiko Nishimura, Guy Baele, Andrew Rambaut +3 more

Data Integration in Bayesian Phylogenetics

Annual Review of Statistics and Its Application(2022)10.1146/annurev-statistics-033021-112532

N/A

0.625DataRank · unranked

18 citations

Andrew F. Magee, Zhenyu Zhang, Guy Baele, Philippe Lemey, Xiang Ji +3 more

Massive Parallelization of Massive Sample-Size Survival Analysis

Journal of Computational and Graphical Statistics(2023)10.1080/10618600.2023.2213279

N/A

0.390DataRank · unranked

5 citations

Martijn J. Schuemie, Xiang Ji, Marc A. Suchard, Jianxiao Yang

From viral evolution to spatial contagion: a biologically modulated Hawkes model

Bioinformatics(2022)10.1093/bioinformatics/btac027

N/A

0.104DataRank · unranked

1 citations

Xiang Ji, Marc A. Suchard, Andrew J. Holbrook

Relaxed Random Walks at Scale

Systematic Biology(2020)10.1093/sysbio/syaa056

N/A

0.104DataRank · unranked

1 citations

Xiang Ji, Zhenyu Zhang, Philippe Lemey, Marc A. Suchard, Alexander A. Fisher

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

Research Square(2021)10.21203/rs.3.rs-1159614/v1

N/A

0DataRank · unranked

5 citations

John T. McCrone, Verity Hill, Sumali Bajaj, Rosario Evans-Pena, Ben Lambert +35 more

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

Nature(2022)10.1038/s41586-022-05200-3

N/A

0DataRank · unranked

143 citations

Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben Lambert, Rhys Inward +35 more

Early Genomic Surveillance and Phylogeographic Analysis of Getah Virus, a Reemerging Arbovirus, in Livestock in China

Journal of Virology(2022)10.1128/jvi.01091-22

N/A

0DataRank · unranked

39 citations

Simon Dellicour, Ziqing Yan, Michael Veit, Mandev S. Gill, Wanting He +6 more

Genomic Epidemiology, Evolution, and Transmission Dynamics of Porcine Deltacoronavirus

Molecular Biology and Evolution(2020)10.1093/molbev/msaa117

N/A

0DataRank · unranked

180 citations

Xiang Ji, Wei He, Simon Dellicour, Shilei Wang, Gairu Li +13 more

Newly identified lineages of porcine hemagglutinating encephalomyelitis virus exhibit respiratory phenotype

Virus Evolution(2023)10.1093/ve/vead051

N/A

0DataRank · unranked

18 citations

Dongyan Li, Guy Baele, Jin Zhao, Zhiwen Jiang, Xiang Ji +7 more

Shrinkage-based Random Local Clocks with Scalable Inference

Molecular Biology and Evolution(2023)10.1093/molbev/msad242

N/A

0DataRank · unranked

15 citations

Xiang Ji, Akihiko Nishimura, Guy Baele, Philippe Lemey, Marc A. Suchard +1 more

Scalable Bayesian Divergence Time Estimation With Ratio Transformations

Systematic Biology(2023)10.1093/sysbio/syad039

N/A

0DataRank · unranked

12 citations

Alexander A. Fisher, Shuo Su, Jeffrey L. Thorne, Barney Potter, Philippe Lemey +3 more

Automatic Differentiation is no Panacea for Phylogenetic Gradient Computation

Genome Biology and Evolution(2023)10.1093/gbe/evad099

N/A

0DataRank · unranked

7 citations

Christiaan Swanepoel, Jared Galloway, Xiang Ji, Karthik Gangavarapu, Marc A. Suchard +2 more

Accelerating Bayesian inference of dependency between mixed-type biological traits

PLoS Computational Biology(2023)10.1371/journal.pcbi.1011419

N/A

0DataRank · unranked

6 citations

Akihiko Nishimura, Nídia S. Trovão, Joshua L. Cherry, Andrew J. Holbrook, Xiang Ji +3 more

Zoonotic infections by avian influenza virus: changing global epidemiology, investigation, and control

The Lancet Infectious Diseases(2024)10.1016/s1473-3099(24)00234-2

N/A

0DataRank · unranked

62 citations

Lifang Wang, Bowen Sun, Wenbo Wan, Xiang Ji, Guy Baele +14 more

Torchtree: flexible phylogenetic model development and inference using PyTorch

arXiv (Cornell University)(2024)10.48550/arxiv.2406.18044

N/A

0DataRank · unranked

0 citations

Matthew Macaulay, Christiaan Swanepoel, Xiang Ji, Marc A. Suchard, Frederick A. Matsen +1 more

The recency and geographical origins of the bat viruses ancestral to SARS-CoV and SARS-CoV-2

Cell(2025)10.1016/j.cell.2025.03.035

N/A

0DataRank · unranked

24 citations

Spyros Lytras, Mahan Ghafari, Andrew F. Magee, Edyth Parker, Yu Wang +14 more

Prevention and control of avian influenza virus: Recent advances in diagnostic technologies and surveillance strategies

Nature Communications(2025)10.1038/s41467-025-58882-4

N/A

0DataRank · unranked

22 citations

Zhiwen Jiang, Lifang Wang, Xiang Ji, Guy Baele, Ying Qin +6 more

HIPSTR: highest independent posterior subtree reconstruction in TreeAnnotator X

Bioinformatics(2025)10.1093/bioinformatics/btaf488

N/A

0DataRank · unranked

14 citations

Luiz Max Carvalho, Marius Brusselmans, Gytis Dudas, Xiang Ji, John T. McCrone +4 more

torchtree : Flexible Phylogenetic Model Development and Inference Using PyTorch

Systematic Biology(2025)10.1093/sysbio/syaf047

N/A

0DataRank · unranked

1 citations

Matthew Macaulay, Christiaan Swanepoel, Xiang Ji, Marc A. Suchard, Frederick A. Matsen +1 more

Snapshot of the evolution and mutation patterns of SARS-CoV-2

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.04.187435

N/A

0DataRank · unranked

26 citations

Jiumeng Sun, Wanting He, Xiang Ji, Qi Gao, Xiaofeng Zhai +7 more

Untangling introductions and persistence in COVID-19 resurgence in Europe

Nature(2021)10.1038/s41586-021-03754-2

N/A

0DataRank · unranked

213 citations

Nick Ruktanonchai, Samuel L. Hong, Vittoria Colizza, Chiara Poletto, Frederik Van den Broeck +12 more

An examination of school reopening strategies during the SARS-CoV-2 pandemic

PLoS ONE(2021)10.1371/journal.pone.0251242

N/A

0DataRank · unranked

22 citations

Xiang Ji, Kenneth Lange, Timothy C. Stutz, Jason Xu, Mary E. Sehl +2 more

Large-scale inference of correlation among mixed-type biological traits with phylogenetic multivariate probit models

The Annals of Applied Statistics(2021)10.1214/20-aoas1394

N/A

0DataRank · unranked

22 citations

Akihiko Nishimura, Paul Bastide, Xiang Ji, Rebecca Payne, Philip Goulder +3 more

Context-specific emergence and growth of the SARS-CoV-2 Delta variant

medRxiv(2021)10.1101/2021.12.14.21267606

N/A

0DataRank · unranked

17 citations

Verity Hill, Sumali Bajaj, Rosario Evans Pena, Ben Lambert, Rhys Inward +35 more