🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jing He

Sichuan Agricultural University

ORCID: 0000-0002-7249-4746
Biochemistry, Genetics and Molecular BiologyMaterials ScienceEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile
0.662Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Cylindrical Similarity Measurement for Helices in Medium-Resolution Cryo-Electron Microscopy Density Maps

Journal of Chemical Information and Modeling(2020)10.1021/acs.jcim.0c00010
Top 42%
0.446DataRank
Top 42%15 citations

Peter Scheible, Maytha Alshammari, Willy Wriggers, Jing He, Salim Sazzed

Papers

Driven by 20 papers — median percentile 47. Top paper: “Cylindrical Similarity Measurement for Helices in Medium-Resolution Cryo-Electron Microscopy Density Maps”.

Cylindrical Similarity Measurement for Helices in Medium-Resolution Cryo-Electron Microscopy Density Maps

Journal of Chemical Information and Modeling(2020)10.1021/acs.jcim.0c00010
Top 42%
0.446DataRank
Top 42%15 citations

Peter Scheible, Maytha Alshammari, Willy Wriggers, Jing He, Salim Sazzed

A Data Set of Paired Structural Segments Between Protein Data Bank and AlphaFold DB for Medium-Resolution Cryo-EM Density Maps: A Gap in Overall Structural Quality

Lecture notes in computer science(2024)10.1007/978-981-97-5087-0_5
Top 63%
0.216DataRank
Top 63%3 citations

Willy Wriggers, Jing He, Thu Ha Nguyen

Correction of Missing-Wedge Artifacts in Filamentous Tomograms by Template-Based Constrained Deconvolution

Journal of Chemical Information and Modeling(2020)10.1021/acs.jcim.9b01111
N/A
0DataRank · unranked
12 citations

Junha Song, Manfred Auer, Jing He, Wade A. Hunter, Willy Wriggers +1 more

Combine Cryo-EM Density Map and Residue Contact for Protein Structure Prediction

PubMed(2020)10.1145/3388440.3414708
N/A
0DataRank · unranked
2 citations

Jing He, Maytha Alshammari

A Tool for Segmentation of Secondary Structures in 3D Cryo-EM Density Map Components Using Deep Convolutional Neural Networks

Frontiers in Bioinformatics(2021)10.3389/fbinf.2021.710119
N/A
0DataRank · unranked
22 citations

Salim Sazzed, Maytha Alshammari, Jiangwen Sun, Jing He, Yongcheng Mu

A Common Pathway for Activation of Host-Targeting and Bacteria-Targeting Toxins in Human Intestinal Bacteria

mBio(2021)10.1128/mbio.00656-21
N/A
0DataRank · unranked
18 citations

Andrew A Verdegaal, Brent W. Anderson, Natasha A. Barry, Jing He, Xiang Gao +2 more

TomoSim: Simulation of Filamentous Cryo-Electron Tomograms

2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)(2021)10.1109/bibm52615.2021.9669370
N/A
0DataRank · unranked
10 citations

Salim Sazzed, Jing He, Willy Wriggers, Peter Scheible

Tracing Filaments in Simulated 3D Cryo-Electron Tomography Maps Using a Fast Dynamic Programming Algorithm

2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)(2021)10.1109/bibm52615.2021.9669318
N/A
0DataRank · unranked
4 citations

Peter Scheible, Jing He, Willy Wriggers, Salim Sazzed

Combining Cryo-EM Density Map and Residue Contact for Protein Secondary Structure Topologies

Molecules(2021)10.3390/molecules26227049
N/A
0DataRank · unranked
0 citations

Jing He, Maytha Alshammari

Untangling Irregular Actin Cytoskeleton Architectures in Tomograms of the Cell with Struwwel Tracer

International Journal of Molecular Sciences(2023)10.3390/ijms242417183
N/A
0DataRank · unranked
3 citations

Peter Scheible, Jing He, Willy Wriggers, Salim Sazzed

AlphaFold2 Model Refinement Using Structure Decoys

PubMed(2023)10.1145/3584371.3612952
N/A
0DataRank · unranked
2 citations

Jing He, Willy Wriggers, Maytha Alshammari

An Approach to Developing Benchmark Datasets for Protein Secondary Structure Segmentation from Cryo-EM Density Maps

PubMed(2023)10.1145/3584371.3612947
N/A
0DataRank · unranked
0 citations

Yongcheng Mu, Jiangwen Sun, Jing He, Thu Ha Nguyen

The combined focal loss and dice loss function improves the segmentation of beta-sheets in medium-resolution cryo-electron-microscopy density maps

Bioinformatics Advances(2024)10.1093/bioadv/vbae169
N/A
0DataRank · unranked
16 citations

Thu Ha Nguyen, Bryan Hawickhorst, Willy Wriggers, Jiangwen Sun, Jing He +1 more

Flexible fitting of AlphaFold2-predicted models to cryo-EM density maps using elastic network models: a methodical affirmation

Bioinformatics Advances(2024)10.1093/bioadv/vbae181
N/A
0DataRank · unranked
4 citations

Jing He, Willy Wriggers, Maytha Alshammari

ModeHunter: A Package for the Reductionist Analysis, Animation, and Application of Elastic Biomolecular Motion

The Journal of Physical Chemistry B(2025)10.1021/acs.jpcb.4c05077
N/A
0DataRank · unranked
1 citations

Maytha Alshammari, Joseph N. Stember, Sebastian Stolzenberg, Essam Metwally, Manfred Auer +3 more

Toward Modeling Protein Multimers by Combining AlphaFold 3 Predictions with Secondary Structures from Medium-Resolution Cryo-EM Maps

Communications in computer and information science(2025)10.1007/978-3-031-85435-4_6
N/A
0DataRank · unranked
0 citations

Thu Ha Nguyen, Willy Wriggers, Jing He, Changrui Li

Decoys Reveal Multiple Basins of Attraction for Cryo-Electron-Microscopy Flexible Fitting

Communications in computer and information science(2025)10.1007/978-3-031-85435-4_3
N/A
0DataRank · unranked
0 citations

Jing He, Willy Wriggers, Maytha Alshammari

DeepSSETracer 2.0: Improved Deep Learning Model Performance for Protein Secondary Structure Segmentation from Cryo-EM Maps

ODU Digital Commons (Old Dominion University)(2025)10.1145/3768322.3769026
N/A
0DataRank · unranked
0 citations

Thu Ha Nguyen, Willy Wriggers, Jiangwen Sun, Jing He, Bryan Hawickhorst

Benchmarking and Improving Foundation Model Dietary Estimates from Meal Images

ODU Digital Commons (Old Dominion University)(2025)10.1145/3765612.3767255
N/A
0DataRank · unranked
0 citations

Jiangwen Sun, Jing He, Yongcheng Mu

Outlier Profiles of Atomic Structures Derived from X-ray Crystallography and from Cryo-Electron Microscopy

Molecules(2020)10.3390/molecules25071540
N/A
0DataRank · unranked
1 citations

Jing He, Lin Chen