Jeremy Gunawardena

Also affiliated with Center for Systems Biology

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 12 papers. Top paper: “Transcriptional kinetic synergy: a complex landscape revealed by integrating modelling and synthetic biology”.

Transcriptional kinetic synergy: a complex landscape revealed by integrating modelling and synthetic biology

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.31.276261

N/A

0DataRank · unranked

7 citations

Minhee Park, Kelly M. Biette, Dhana Friedrich, Clarissa Scholes, Ahmad S. Khalil +3 more

Allosteric conformational ensembles have unlimited capacity for integrating information

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.10.420117

N/A

0DataRank · unranked

6 citations

Rosa Martinez-Corral, Felix Wong, Jeremy Gunawardena, John Biddle

Allosteric conformational ensembles have unlimited capacity for integrating information

eLife(2021)10.7554/elife.65498

N/A

0DataRank · unranked

39 citations

Rosa Martinez-Corral, Felix Wong, Jeremy Gunawardena, John Biddle

Transcriptional kinetic synergy: A complex landscape revealed by integrating modeling and synthetic biology

Cell Systems(2023)10.1016/j.cels.2023.02.003

N/A

0DataRank · unranked

33 citations

Minhee Park, Kelly M. Biette, Dhana Friedrich, Clarissa Scholes, Ahmad S. Khalil +3 more

The linear framework II: using graph theory to analyse the transient regime of Markov processes

Frontiers in Cell and Developmental Biology(2023)10.3389/fcell.2023.1233808

N/A

0DataRank · unranked

10 citations

Jeremy Gunawardena, Kee-Myoung Nam

MSModDetector: A Tool for Detecting Mass Shifts and Post-Translational Modifications in Individual Ion Mass Spectrometry Data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.06.543961

N/A

0DataRank · unranked

2 citations

Ryan T. Fellers, Dan Lü, Bryon Drown, Ashwini Jambhekar, Galit Lahav +3 more

MSModDetector: a tool for detecting mass shifts and post-translational modifications in individual ion mass spectrometry data

Bioinformatics(2024)10.1093/bioinformatics/btae335

N/A

0DataRank · unranked

3 citations

Ryan T. Fellers, Dan Lü, Bryon Drown, Ashwini Jambhekar, Galit Lahav +3 more

Emergence of activation or repression in transcriptional control under a fixed molecular context

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.29.596388

N/A

0DataRank · unranked

11 citations

Dhana Friedrich, Robert Frömel, Lars Velten, Jeremy Gunawardena, Angela H. DePace +1 more

The Hill function is the universal Hopfield barrier for sharpness of input-output responses

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.27.587054

N/A

0DataRank · unranked

2 citations

Kee-Myoung Nam, Angela H. DePace, Jeremy Gunawardena, Rosa Martinez-Corral

A mathematical model clarifies the ABC Score formula used in enhancer-gene prediction

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.29.626072

N/A

0DataRank · unranked

0 citations

Kee-Myoung Nam, Jeremy Gunawardena, Joseph Nasser

Emergence of activation or repression in transcriptional control under a fixed molecular context

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2413715122

N/A

0DataRank · unranked

6 citations

Dhana Friedrich, Robert Frömel, Lars Velten, Jeremy Gunawardena, Angela H. DePace +1 more

Algebraic formulas for first-passage times of Markov processes in the linear framework

Bulletin of Mathematical Biology(2025)10.1007/s11538-025-01524-z

N/A

0DataRank · unranked

1 citations

Jeremy Gunawardena, Kee-Myoung Nam