🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Jonathan Crabtree

University of Maryland, Baltimore

ORCID: 0000-0002-7286-5690

Also affiliated with MEP Equine Solutions (United States), Newmarket Equine Hospital

Biochemistry, Genetics and Molecular BiologyAgricultural and Biological SciencesImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
26.8Author DataRank

Indexed papers

10in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 10 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A framework for human microbiome research

Nature(2012)10.1038/nature11209
Top 2%
8.4DataRank
Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

Papers

Driven by 16 papers — median percentile 84. Top paper: “A framework for human microbiome research”.

A framework for human microbiome research

Nature(2012)10.1038/nature11209
Top 2%
8.4DataRank
Top 2%2766 citations

Barbara A. Methé, William Nelson, Mihai Pop, Heather H. Creasy, Michelle Giglio +236 more

A multimodal cell census and atlas of the mammalian primary motor cortex

Nature(2021)10.1038/s41586-021-03950-0
Top 5%
4.3DataRank
Top 5%574 citations

BRAIN Initiative Cell Census Network (BICCN) Corresponding authors, Edward M. Callaway, Joseph R. Ecker, Z. Josh Huang, Ed S. Lein +252 more

A comprehensive non-redundant gene catalog reveals extensive within-community intraspecies diversity in the human vagina

Nature Communications(2020)10.1038/s41467-020-14677-3
Top 5%
4.3DataRank
Top 5%196 citations

Michael France, Jonathan Crabtree, Johanna B. Holm, Michael S. Humphrys, Rebecca M. Brotman +2 more

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Nature(2021)10.1038/s41586-021-03500-8
Top 5%
4.2DataRank
Top 5%389 citations

Julie A. Harris, Fangming Xie, Stephan Fischer, Ricky S. Adkins, Andrew I. Aldridge +81 more

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.29.970558
Top 13%
1.6DataRank
Top 13%63 citations

Julie A. Harris, Fangming Xie, Stephan Fischer, A. Sina Booeshaghi, Ricky S. Adkins +78 more

Structure, function and diversity of the healthy human microbiome

Nature(2012)10.1038/nature11234
N/A
1.4DataRank · unranked
10088 citations

Curtis Huttenhower, Dirk Gevers, Rob Knight, Sahar Abubucker, Jonathan H. Badger +235 more

Complex genetic variation in nearly complete human genomes

Nature(2025)10.1038/s41586-025-09140-6
Top 19%
1.1DataRank
Top 19%83 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

HMPDACC: a Human Microbiome Project Multi-omic data resource

Nucleic Acids Research(2020)10.1093/nar/gkaa996
Top 20%
1.0DataRank
Top 20%33 citations

Victor Felix, Jain Aluvathingal, Jonathan Crabtree, Olukemi O. Ifeonu, James Matsumura +8 more

The Neuroscience Multi-Omic Archive: a BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain

Nucleic Acids Research(2022)10.1093/nar/gkac962
Top 20%
1.0DataRank
Top 20%70 citations

Ricky S. Adkins, Robert Carter, Elena Chrysostomou, Carlo Colantuoni, Jonathan Crabtree +24 more

Complex genetic variation in nearly complete human genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.24.614721
Top 27%
0.741DataRank
Top 27%27 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

Making Common Fund data more findable: catalyzing a data ecosystem

GigaScience(2022)10.1093/gigascience/giac105
N/A
0.425DataRank · unranked
16 citations

Arthur Brady, Karl Czajkowski, Jain Aluvathingal, Saranya Canchi, Leonard Hartmanis +38 more

Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz

F1000Research(2021)10.12688/f1000research.24345.2
N/A
0.119DataRank · unranked
1 citations

Jayaram Kancherla, Domenick J. Braccia, James Matsumara, Victor Felix, Jonathan Crabtree +3 more

Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potential

Genome Medicine(2020)10.1186/s13073-019-0708-9
N/A
0DataRank · unranked
88 citations

Elliott F. Drábek, Ankit Dwivedi, Emily M. Stucke, Jonathan Crabtree, Antoine Dara +29 more

Interactive exploratory data analysis of Integrative Human Microbiome Project data using Metaviz

F1000Research(2020)10.12688/f1000research.24345.1
N/A
0DataRank · unranked
3 citations

Jayaram Kancherla, Domenick J. Braccia, James Matsumara, Victor Felix, Jonathan Crabtree +3 more

Mutagenesis of human genomes by endogenous mobile elements on a population scale

Genome Research(2021)10.1101/gr.275323.121
N/A
0DataRank · unranked
25 citations

Eugene J. Gardner, Diane Terry, Jonathan Crabtree, Anup A. Mahurkar, Guillermo L. Rivell +4 more

The Neuroscience Multi-Omic Archive: A BRAIN Initiative resource for single-cell transcriptomic and epigenomic data from the mammalian brain

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.08.505285
Top 100%
0DataRank
Top 100%0 citations

Ricky S. Adkins, Robert Carter, Elena Chrysostomou, Carlo Colantuoni, Jonathan Crabtree +23 more