🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Hugh E. Olsen

University of California, Santa Cruz

ORCID: 0000-0002-7293-8853
Biochemistry, Genetics and Molecular BiologyAgricultural and Biological SciencesEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile
14.1Author DataRank

Indexed papers

6in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 6 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x
Top 4%
5.1DataRank
Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Papers

Driven by 24 papers — median percentile 85. Top paper: “Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes”.

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

Nature Biotechnology(2020)10.1038/s41587-020-0503-6
N/A
12.8DataRank · unranked
655 citations

Trevor Pesout, Ryan Lorig-Roach, Marina Haukness, Hugh E. Olsen, Colleen M. Bosworth +27 more

A draft human pangenome reference

Nature(2023)10.1038/s41586-023-05896-x
Top 4%
5.1DataRank
Top 4%1169 citations

Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Hickey, Glenn +95 more

Pangenome graph construction from genome alignments with Minigraph-Cactus

Nature Biotechnology(2023)10.1038/s41587-023-01793-w
N/A
5.0DataRank · unranked
318 citations

Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Gao +94 more

The complete sequence of a human Y chromosome

Nature(2023)10.1038/s41586-023-06457-y
Top 5%
4.1DataRank
Top 5%464 citations

Sergey Nurk, Mark J. P. Chaisson, Savannah J. Hoyt, Dylan J. Taylor, Nicolas Altemose +82 more

A Draft Human Pangenome Reference

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.09.499321
Top 8%
2.9DataRank
Top 8%74 citations

Mobin Asri, Daniel Doerr, Eoghan Harrington, Hickey, Glenn, Julian K. Lucas +47 more

Increased mutation and gene conversion within human segmental duplications

Nature(2023)10.1038/s41586-023-05895-y
N/A
2.1DataRank · unranked
114 citations

Philip C. Dishuck, William T. Harvey, William S. DeWitt, Xavi Guitart, Michael E. Goldberg +108 more

The complete sequence of a human Y chromosome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.01.518724
Top 22%
0.934DataRank
Top 22%42 citations

Sergey Nurk, Savannah J. Hoyt, Dylan J. Taylor, Nicolas Altemose, Paul W. Hook +79 more

Automated assembly of high-quality diploid human reference genomes

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.06.483034
Top 28%
0.719DataRank
Top 28%22 citations

Giulio Formenti, Arang Rhie, Andrea Guarracino, Chentao Yang, Jonathan M. D. Wood +77 more

Recombination between heterologous human acrocentric chromosomes

Nature(2023)10.1038/s41586-023-05976-y
N/A
0.710DataRank · unranked
113 citations

Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren +106 more

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100543
Top 50%
0.352DataRank
Top 50%6 citations

Stephanie Greer, Dmitri S. Pavlichin, Bo Zhou, Alexander E. Urban, Tsachy Weissman +94 more

Nanopore ReCappable Sequencing maps SARS-CoV-2 5′ capping sites and provides new insights into the structure of sgRNAs

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.24.469860
N/A
0DataRank · unranked
0 citations

Logan Mulroney, Adrien Léger, Matteo Castelli, Elena Criscuolo, Maia Kavanagh Williamson +20 more

Advances in nanopore direct RNA sequencing

Nature Methods(2022)10.1038/s41592-022-01633-w
N/A
0DataRank · unranked
226 citations

Robin Abu-Shumays, Hugh E. Olsen, Mark Akeson, Miten Jain

Nanopore ReCappable sequencing maps SARS-CoV-2 5′ capping sites and provides new insights into the structure of sgRNAs

Nucleic Acids Research(2022)10.1093/nar/gkac144
N/A
0DataRank · unranked
29 citations

Logan Mulroney, Adrien Léger, Matteo Castelli, Elena Criscuolo, Maia Kavanagh Williamson +20 more

Phased nanopore assembly with Shasta and modular graph phasing with GFAse

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.21.529152
N/A
0DataRank · unranked
13 citations

Melissa Meredith, Jean Monlong, Miten Jain, Hugh E. Olsen, Brandy McNulty +18 more

Phased nanopore assembly with Shasta and modular graph phasing with GFAse

Genome Research(2024)10.1101/gr.278268.123
N/A
0DataRank · unranked
16 citations

Melissa Meredith, Jean Monlong, Miten Jain, Hugh E. Olsen, Brandy McNulty +18 more

CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma

Genome biology(2020)10.1186/s13059-020-01995-4
N/A
0DataRank · unranked
159 citations

Martina Malatesta, Brian V. Lien, Parna Saha, Shivani S. Thombare, Sung Jun Hong +16 more

A Survey of Rare Epigenetic Variation in 23,116 Human Genomes Identifies Disease-Relevant Epivariations and CGG Expansions

The American Journal of Human Genetics(2020)10.1016/j.ajhg.2020.08.019
N/A
0DataRank · unranked
68 citations

Bharati Jadhav, Oscar L. Rodriguez, Nihir Patel, Alejandro Martin-Trujillo, Miten Jain +8 more

Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts

Bioinformatics(2020)10.1093/bioinformatics/btaa601
N/A
0DataRank · unranked
29 citations

Andrew D. Bailey, Miten Jain, Hugh E. Olsen, Benedict Paten, Hongxu Ding

Identification of high confidence human poly(A) RNA isoform scaffolds using nanopore sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.18.389049
N/A
0DataRank · unranked
4 citations

Madalee G. Wulf, Ira Schildkraut, George Tzertzinis, J. A. Buswell, Miten Jain +6 more

A survey of rare epigenetic variation in 23,116 human genomes identifies disease-relevant epivariations and novel CGG expansions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.25.007864
N/A
0DataRank · unranked
0 citations

Bharati Jadhav, Oscar L. Rodriguez, Nihir Patel, Alejandro Martin-Trujillo, Miten Jain +8 more

Direct Nanopore Sequencing of Individual Full Length tRNA Strands

ACS Nano(2021)10.1021/acsnano.1c06488
N/A
0DataRank · unranked
130 citations

Vinay Chaitanya Poodari, Miten Jain, Hugh E. Olsen, Mark Akeson, Robin Abu-Shumays +1 more

Identification of high-confidence human poly(A) RNA isoform scaffolds using nanopore sequencing

RNA(2021)10.1261/rna.078703.121
N/A
0DataRank · unranked
29 citations

Madalee G. Wulf, Ira Schildkraut, George Tzertzinis, J. A. Buswell, Miten Jain +6 more

Direct Nanopore Sequencing of Individual Full Length tRNA Strands

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.26.441285
N/A
0DataRank · unranked
9 citations

Vinay Chaitanya Poodari, Miten Jain, Hugh E. Olsen, Mark Akeson, Robin Abu-Shumays +1 more

A new SARS-CoV-2 lineage that shares mutations with known Variants of Concern is rejected by automated sequence repository quality control

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.05.438352
N/A
0DataRank · unranked
7 citations

Angie S. Hinrichs, Miten Jain, Namrita Dhillon, Scott La, Joshua D. Kapp +17 more