Nils G. Walter

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 57 papers. Top paper: “Multivalent Proteins Rapidly and Reversibly Phase-Separate upon Osmotic Cell Volume Change”.

Multivalent Proteins Rapidly and Reversibly Phase-Separate upon Osmotic Cell Volume Change

Molecular Cell(2020)10.1016/j.molcel.2020.08.004

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145 citations

Sethuramasundaram Pitchiaya, Lanbo Xiao, Pushpinder Bawa, Xia Jiang, Karan Bedi +6 more

Automatic classification and segmentation of single-molecule fluorescence time traces with deep learning

Nature Communications(2020)10.1038/s41467-020-19673-1

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54 citations

Leyou Zhang, Alexander Johnson‐Buck, Nils G. Walter, Jieming Li

Hyperosmotic phase separation: Condensates beyond inclusions, granules and organelles

Journal of Biological Chemistry(2020)10.1074/jbc.rev120.010899

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55 citations

Andreas Schmidt, Guoming Gao, Saffron R. Little, Sethuramasundaram Pitchiaya, Nils G. Walter +1 more

Following the messenger: Recent innovations in live cell single molecule fluorescence imaging

Wiley Interdisciplinary Reviews - RNA(2020)10.1002/wrna.1587

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38 citations

Guoming Gao, Saffron R. Little, Ameya P. Jalihal, Nils G. Walter, Andreas Schmidt

Cytoplasmic TDP43 Binds microRNAs: New Disease Targets in Amyotrophic Lateral Sclerosis

Frontiers in Cellular Neuroscience(2020)10.3389/fncel.2020.00117

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32 citations

Claudia Figueroa‐Romero, Amy E. Rumora, Junguk Hur, Faye E. Mendelson, John M. Hayes +8 more

Single Molecule Cluster Analysis dissects splicing pathway conformational dynamics

UNC Libraries(2020)10.17615/9186-ab56

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0 citations

Mario R. Blanco, Joshua S. Martin, John Abelson, Nils G. Walter, Ramya Krishnan +2 more

A translational riboswitch coordinates nascent transcription–translation coupling

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2023426118

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64 citations

Adrien Chauvier, Shiba S. Dandpat, Irina Artsimovitch, Nils G. Walter, Surajit Chatterjee

Transcriptional Riboswitches Integrate Timescales for Bacterial Gene Expression Control

Frontiers in Molecular Biosciences(2021)10.3389/fmolb.2020.607158

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59 citations

Shiba S. Dandpat, Rosa A. Romero, Nils G. Walter, Catherine E. Scull

Dynamic competition between a ligand and transcription factor NusA governs riboswitch-mediated transcription regulation

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2109026118

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45 citations

Pujan Ajmera, Rajeev Yadav, Nils G. Walter, Adrien Chauvier

Rapid kinetic fingerprinting of single nucleic acid molecules by a FRET-based dynamic nanosensor

Biosensors and Bioelectronics(2021)10.1016/j.bios.2021.113433

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29 citations

Shankar Mandal, Aaron T. Blanchard, Muneesh Tewari, Alexander Johnson‐Buck, Nils G. Walter +1 more

Single bacterial resolvases first exploit, then constrain intrinsic dynamics of the Holliday junction to direct recombination

Nucleic Acids Research(2021)10.1093/nar/gkab096

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15 citations

Nibedita Pal, Nils G. Walter, Sujay Ray

A guide to accelerated direct digital counting of single nucleic acid molecules by FRET-based intramolecular kinetic fingerprinting

Methods(2021)10.1016/j.ymeth.2021.06.014

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11 citations

K. L. Khanna, Alexander Johnson‐Buck, Nils G. Walter, Shankar Mandal

Sisyphus observed: Unraveling the high ATP usage of an RNA chaperone

Journal of Biological Chemistry(2021)10.1016/j.jbc.2021.100265

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1 citations

Nils G. Walter, Elizabeth C. Duran

From Flatland to Jupiter: Searching for Rules of Interaction Across Biological Scales

Integrative and Comparative Biology(2021)10.1093/icb/icab159

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1 citations

Mandë Holford, Nils G. Walter, Claudia A. Grillo

An anionic ligand snap-locks a long-range interaction in a magnesium-folded riboswitch

Research Square(2021)10.21203/rs.3.rs-459800/v1

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2 citations

Julia R. Widom, Adrien Chauvier, Nils G. Walter, Rajeev Yadav

Rapid Kinetic Fingerprinting of Single Nucleic Acid Molecules by a FRET-based Dynamic Nanosensor

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.06.438627

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1 citations

Shankar Mandal, Aaron T. Blanchard, Muneesh Tewari, Alexander Johnson‐Buck, Nils G. Walter +1 more

Precise tuning of bacterial translation initiation by non-equilibrium 5’-UTR unfolding observed in single mRNAs

Research Square(2021)10.21203/rs.3.rs-551111/v1

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0 citations

Shiba S. Dandpat, Surajit Chatterjee, Nils G. Walter, Sujay Ray

Structural Basis for Control of Bacterial RNA Polymerase Pausing by a Riboswitch and its Ligand

Research Square(2021)10.21203/rs.3.rs-1086698/v1

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0DataRank · unranked

0 citations

Adrien Chauvier, Jason C. Porta, Indrajit Deb, Emily Ellinger, Aaron T. Frank +2 more

An anionic ligand snap-locks a long-range interaction in a magnesium-folded riboswitch

Nature Communications(2022)10.1038/s41467-021-27827-y

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45 citations

Julia R. Widom, Adrien Chauvier, Nils G. Walter, Rajeev Yadav

Highly sensitive protein detection by aptamer-based single-molecule kinetic fingerprinting

Biosensors and Bioelectronics(2022)10.1016/j.bios.2022.114639

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25 citations

Alexander Johnson‐Buck, Nils G. Walter, Tanmay Chatterjee

Precise tuning of bacterial translation initiation by non-equilibrium 5′-UTR unfolding observed in single mRNAs

Nucleic Acids Research(2022)10.1093/nar/gkac635

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14 citations

Shiba S. Dandpat, Surajit Chatterjee, Nils G. Walter, Sujay Ray

Ultra-photostable DNA FluoroCubes: Mechanism of Photostability and Compatibility with FRET and Dark Quenching

Nano Letters(2022)10.1021/acs.nanolett.2c01757

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10 citations

Zi Li, Elizabeth C. Duran, Catherine E. Scull, J. Damon Hoff, Keenan R. Wright +3 more

Probing Transient Riboswitch Structures via Single Molecule Accessibility Analysis

Methods in molecular biology(2022)10.1007/978-1-0716-2687-0_4

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4 citations

Andreas Schmidt, Nils G. Walter, Robb Welty

Correction to Ultra-photostable DNA FluoroCubes: Mechanism of Photostability and Compatibility with FRET and Dark Quenching

Nano Letters(2022)10.1021/acs.nanolett.2c03349

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0DataRank · unranked

0 citations

Li Zi, Elizabeth C. Duran, Catherine E. Scull, J. Damon Hoff, Keenan R. Wright +3 more

Spontaneous confinement of mRNA at RNP granule interfaces

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.28.518040

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0 citations

Andreas Schmidt, Umar Khan, Nils G. Walter, Rebecca T. Perelman

Riboswitches as therapeutic targets: promise of a new era of antibiotics

Expert Opinion on Therapeutic Targets(2023)10.1080/14728222.2023.2230363

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40 citations

Adrien Chauvier, Rosa A. Romero, Yichen Liu, Sujay Ray, Nils G. Walter +1 more

A rhythmically pulsing leaf-spring DNA-origami nanoengine that drives a passive follower

Nature Nanotechnology(2023)10.1038/s41565-023-01516-x

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39 citations

Erik Poppleton, Sujay Ray, Martin Centola, Robb Welty, Julián Valero +4 more

Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand

Nature Structural & Molecular Biology(2023)10.1038/s41594-023-01002-x

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29 citations

Jason C. Porta, Indrajit Deb, Emily Ellinger, Katarina Meze, Aaron T. Frank +3 more

Critical Assessment of Condensate Boundaries in Dual-Color Single Particle Tracking

The Journal of Physical Chemistry B(2023)10.1021/acs.jpcb.3c03776

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6 citations

Nils G. Walter, Guoming Gao

Single-molecule FRET observes opposing effects of urea and TMAO on structurally similar meso- and thermophilic riboswitch RNAs

Nucleic Acids Research(2023)10.1093/nar/gkad866

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7 citations

Surajit Chatterjee, Paul E. Lund, Krishna C. Suddala, Nils G. Walter, Qian Hou

Utilizing functional cell‐free extracts to dissect ribonucleoprotein complex biology at single‐molecule resolution

Wiley Interdisciplinary Reviews - RNA(2023)10.1002/wrna.1787

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4 citations

Andreas Schmidt, Robb Welty, Ameya P. Jalihal, Sethuramasundaram Pitchiaya, Nils G. Walter +1 more

Spontaneous Confinement of mRNA Molecules at Biomolecular Condensate Boundaries

Cells(2023)10.3390/cells12182250

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1 citations

Andreas Schmidt, Umar Khan, Nils G. Walter, Rebecca T. Perelman

BNP-Track: A framework for superresolved tracking

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.03.535459

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3 citations

Lance W.Q. Xu, Ameya P. Jalihal, Nils G. Walter, Steve Pressé, Ioannis Sgouralis

Regulation of bacterial gene expression by non-coding RNA: It is all about time!

Cell chemical biology(2024)10.1016/j.chembiol.2023.12.011

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26 citations

Nils G. Walter, Adrien Chauvier

A nascent riboswitch helix orchestrates robust transcriptional regulation through signal integration

Nature Communications(2024)10.1038/s41467-024-48409-8

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14 citations

Shiba S. Dandpat, Rosa Romero Franco, Nils G. Walter, Adrien Chauvier

Are non‐protein coding RNAs junk or treasure?

BioEssays(2024)10.1002/bies.202300201

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15 citations

Nils G. Walter

BNP-Track: a framework for superresolved tracking

Nature Methods(2024)10.1038/s41592-024-02349-9

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15 citations

Lance W.Q. Xu, Ameya P. Jalihal, Zeliha Kilic, Nils G. Walter, Steve Pressé +1 more

Beyond ligand binding: Single molecule observation reveals how riboswitches integrate multiple signals to balance bacterial gene regulation

Current Opinion in Structural Biology(2024)10.1016/j.sbi.2024.102893

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8 citations

Nils G. Walter, Adrien Chauvier

Ultrasensitive Amplification-Free Quantification of a Methyl CpG-Rich Cancer Biomarker by Single-Molecule Kinetic Fingerprinting

Analytical Chemistry(2024)10.1021/acs.analchem.4c03002

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4 citations

Alexander Johnson‐Buck, Peter W. Laird, Muneesh Tewari, Nils G. Walter, Liuhan Dai

smFRET-assisted RNA structure prediction

Communications in Information and Systems(2024)10.4310/cis.241021213225

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1 citations

Nils G. Walter, Shi‐Jie Chen, Jun Li

Foundation model for efficient biological discovery in single-molecule data

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.26.609721

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3 citations

Leyou Zhang, Alexander Johnson‐Buck, Nils G. Walter, Jieming Li

Molecular basis of mRNA delivery to the bacterial ribosome

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.19.585789

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2 citations

Adrien Chauvier, Huma Rahil, Andrea Graziadei, Kristine Charles, Mária Takács +5 more

Mechanistic model for epigenetic maintenance by methyl-CpG-binding domain proteins

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.22.614380

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2 citations

Alexander Johnson‐Buck, Nils G. Walter, Liuhan Dai

A nascent riboswitch helix orchestrates robust transcriptional regulation through signal integration

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.23.576946

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0DataRank · unranked

0 citations

Shiba S. Dandpat, Rosa Romero Franco, Nils G. Walter, Adrien Chauvier

A nascent riboswitch helix orchestrates robust transcriptional regulation through signal integration

Research Square(2024)10.21203/rs.3.rs-3849447/v1

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0DataRank · unranked

0 citations

Adrien Chauvier, Shiba S. Dandpat, Rosa Romero Franco, Nils G. Walter

Ultrasensitive amplification-free quantification of a methyl CpG-rich cancer biomarker by single-molecule kinetic fingerprinting

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.06.587997

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0 citations

Alexander Johnson‐Buck, Peter W. Laird, Muneesh Tewari, Nils G. Walter, Liuhan Dai

Foundation model for efficient biological discovery in single-molecule data

Research Square(2024)10.21203/rs.3.rs-4970585/v1

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0 citations

Nils G. Walter

Nanoscale domains govern local diffusion and ageing within fused-in-sarcoma condensates

Nature Nanotechnology(2025)10.1038/s41565-025-02077-x

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13 citations

Emily R. Sumrall, Nils G. Walter, Guoming Gao

Pretrained Deep Neural Network Kin-SiM for Single-Molecule FRET Trace Idealization

The Journal of Physical Chemistry B(2025)10.1021/acs.jpcb.4c05276

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8 citations

Jieming Li, Nils G. Walter, Leyou Zhang

Foundation model for efficient biological discovery in single-molecule time traces

Nature Methods(2025)10.1038/s41592-025-02839-4

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4 citations

Leyou Zhang, Alexander Johnson‐Buck, Nils G. Walter, Jieming Li

A unifying model for microRNA-guided silencing of messenger RNAs

Nature Communications(2025)10.1038/s41467-025-67186-6

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1 citations

Shankar Mandal, Sujay Ray, Alexander Johnson‐Buck, Nils G. Walter, Tanmay Chatterjee

Surface-Tethering Enhances Precision in Measuring Diffusion Within 3D Protein Condensates

Journal of Molecular Biology(2025)10.1016/j.jmb.2025.169447

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2 citations

Guoming Gao, Shelby Stakenas, Nils G. Walter, Emily R. Sumrall

Chromato-kinetic fingerprinting enables multiomic digital counting of single disease biomarker molecules

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.31.636009

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1 citations

Sujay Ray, Liuhan Dai, Erin Sandford, Tanmay Chatterjee, Shankar Mandal +4 more

Co-transcriptional folding orchestrates sequential multi-effector sensing by a glycine tandem riboswitch

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.28.656632

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0DataRank · unranked

1 citations

Adrien Chauvier, Serena S. Teh, Vincent A. Reed, Sicheng Zhang, Courtney E. Szyjka +4 more

Nanoscale domains govern local diffusion and aging within FUS condensates

Research Square(2025)10.21203/rs.3.rs-6406576/v1

N/A

0DataRank · unranked

0 citations

Guoming Gao, Emily R. Sumrall, Nils G. Walter

Co-transcriptional folding orchestrates sequential multi-effector sensing by a glycine tandem riboswitch

Research Square(2025)10.21203/rs.3.rs-6999249/v1

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0DataRank · unranked

0 citations

Rosa Romero Franco, Adrien Chauvier, Serena S. Teh, Vincent A. Reed, Sicheng Zhang +4 more

ER tethering and active transport govern condensate diffusion during hyperosmotic stress

Research Square(2025)10.21203/rs.3.rs-6895807/v1

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0DataRank · unranked

0 citations

Guoming Gao, Armin Ahnoud, Shelby Stakenas, Emily R. Sumrall, Nils G. Walter +1 more