Luigi Marchionni

Also affiliated with Presbyterian Hospital, Weill Cornell Medicine

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile

0.928Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Recounting the FANTOM CAGE-Associated Transcriptome

Genome Research(2020)10.1101/gr.254656.119

Top 22%

0.928DataRank

Top 22%33 citations

Diego F. Sánchez, Leonardo Collado‐Torres, Christopher Wilks, Tejasvi Matam, Wikum Dinalankara +19 more

Papers

Driven by 54 papers — median percentile 78. Top paper: “A field guide to cultivating computational biology”.

A field guide to cultivating computational biology

PLOS Biology(2021)10.1371/journal.pbio.3001419

N/A

1.3DataRank · unranked

22 citations

Casey S. Greene, Piero Carninci, Benilton S. Carvalho, Michiel de Hoon, Stacey D. Finley +11 more

Emergence of transmissible SARS-CoV-2 variants with decreased sensitivity to antivirals in immunocompromised patients with persistent infections

Nature Communications(2024)10.1038/s41467-024-51924-3

N/A

1.2DataRank · unranked

49 citations

Katherine Johnson, Ruchi Rani, Eli J. Finkelsztein, Leonardo C. Caserta, Rosy Priya Kodiyanplakkal +13 more

Recounting the FANTOM CAGE-Associated Transcriptome

Genome Research(2020)10.1101/gr.254656.119

Top 22%

0.928DataRank

Top 22%33 citations

Diego F. Sánchez, Leonardo Collado‐Torres, Christopher Wilks, Tejasvi Matam, Wikum Dinalankara +19 more

A field guide to cultivating computational biology

arXiv (Cornell University)(2021)10.48550/arxiv.2104.11364

N/A

0.104DataRank · unranked

1 citations

Casey S. Greene, Piero Carnici, Benilton S. Carvalho, Michiel de Hoon, Stacey D. Finley +9 more

Influenza Vaccination and COVID19 Mortality in the USA

medRxiv(2020)10.1101/2020.06.24.20129817

N/A

0DataRank · unranked

88 citations

Mohamed Omar, Wikum Dinalankara, Eddie L. Imada, Elizabeth Colantuoni, Giovanni Parmigiani +2 more

Comparative transcriptomics of primary cells in vertebrates

Genome Research(2020)10.1101/gr.255679.119

N/A

0DataRank · unranked

47 citations

Saumya Agrawal, Jessica Severin, Robert S. Young, Robin Andersson, Erik Arner +20 more

Identifying personalized metabolic signatures in breast cancer

Preprints.org(2020)10.20944/preprints202011.0474.v1

N/A

0DataRank · unranked

6 citations

Wikum Dinalankara, John C. Earls, Theo Knijnenburg, Donald Geman, Luigi Marchionni +2 more

Efficient Representations of Tumor Diversity with Paired DNA-RNA Aberrations

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.24.060129

N/A

0DataRank · unranked

3 citations

Wikum Dinalankara, Laurent Younès, Donald Geman, Luigi Marchionni, Qian Ke

Transcriptional landscape of PTEN loss in primary prostate cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.08.332049

N/A

0DataRank · unranked

2 citations

Diego F. Sánchez, Wikum Dinalankara, Thiago Vidotto, Ericka M. Ebot, Svitlana Tyekucheva +7 more

Plasma cells are enriched in localized prostate cancer in Black men and are associated with improved outcomes

Nature Communications(2021)10.1038/s41467-021-21245-w

N/A

0DataRank · unranked

114 citations

Thiago Vidotto, Yang Liu, Adrianna A. Mendes, Daniela C. Salles, Farzana A. Faisal +14 more

Influenza Vaccination and COVID-19 Mortality in the USA: An Ecological Study

Vaccines(2021)10.3390/vaccines9050427

N/A

0DataRank · unranked

90 citations

Mohamed Omar, Wikum Dinalankara, Eddie L. Imada, Elizabeth Colantuoni, Giovanni Parmigiani +2 more

Building Tools for Machine Learning and Artificial Intelligence in Cancer Research: Best Practices and a Case Study with the PathML Toolkit for Computational Pathology

Molecular Cancer Research(2021)10.1158/1541-7786.mcr-21-0665

N/A

0DataRank · unranked

47 citations

Ryan Carelli, Mohamed Omar, David Brundage, Ella Halbert, Jackson Nyman +6 more

Transcriptional landscape of PTEN loss in primary prostate cancer

BMC Cancer(2021)10.1186/s12885-021-08593-y

N/A

0DataRank · unranked

34 citations

Diego F. Sánchez, Wikum Dinalankara, Thiago Vidotto, Ericka M. Ebot, Svitlana Tyekucheva +7 more

Newly Identified Members of FGFR1 Splice Variants Engage in Cross-talk with AXL/AKT Axis in Salivary Adenoid Cystic Carcinoma

Cancer Research(2021)10.1158/0008-5472.can-20-1780

N/A

0DataRank · unranked

20 citations

Hyun-Su Kim, Brandon Leonard, Shizhang Ling, Bhumsuk Keam, Luigi Marchionni +7 more

A robust and interpretable gene signature for predicting the lymph node status of primary T1/T2 oral cavity squamous cell carcinoma

International Journal of Cancer(2021)10.1002/ijc.33828

N/A

0DataRank · unranked

13 citations

Mohamed Omar, Esther Channah Broner, Nishant Agrawal, Alexander T. Pearson, Ari J. Rosenberg +8 more

RNA‐sequencing highlights differential regulated pathways involved in cell cycle and inflammation in orbitofacial neurofibromas

Brain Pathology(2021)10.1111/bpa.13007

N/A

0DataRank · unranked

5 citations

Diego Strianese, Deepak P. Edward, Rawan N. Althaqib, Antionette Price, Antje Arnold +4 more

Hobotnica: exploring molecular signature quality

F1000Research(2021)10.12688/f1000research.74846.1

N/A

0DataRank · unranked

4 citations

Alexey Sizykh, Alexander V. Favorov, Bahman Afsari, Sarah J. Wheelan, Luigi Marchionni +2 more

Efficient representations of tumor diversity with paired DNA-RNA aberrations

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008944

N/A

0DataRank · unranked

3 citations

Wikum Dinalankara, Laurent Younès, Donald Geman, Luigi Marchionni, Qian Ke

An R package for divergence analysis of omics data

PLoS ONE(2021)10.1371/journal.pone.0249002

N/A

0DataRank · unranked

2 citations

Qian Ke, Donald Geman, Luigi Marchionni, Wikum Dinalankara

Using Biological Constraints to Improve Prediction in Precision Oncology

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.25.445604

N/A

0DataRank · unranked

2 citations

Wikum Dinalankara, Lotte Mulder, Tendai Coady, Claudio Zanettini, Eddie L. Imada +4 more

Hobotnica: exploring molecular signature quality

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.09.12.459931

N/A

0DataRank · unranked

0 citations

Alexey Sizykh, Alexander V. Favorov, Bahman Afsari, Sarah J. Wheelan, Luigi Marchionni +2 more

Hyaluronan driven by epithelial aPKC deficiency remodels the microenvironment and creates a vulnerability in mesenchymal colorectal cancer

Cancer Cell(2022)10.1016/j.ccell.2022.11.016

N/A

0DataRank · unranked

58 citations

Ángeles Durán, Marc Ruíz-Martínez, Tania Cid-Diaz, Xiao Zhang, Qixiu Han +18 more

A FOXO1-dependent transcription network is a targetable vulnerability of mantle cell lymphomas

Journal of Clinical Investigation(2022)10.1172/jci160767

N/A

0DataRank · unranked

26 citations

Inah Hwang, Heng Pan, Jun Yao, Lapo Alinari, Eddie L. Imada +19 more

Recurrent germline variant in ATM associated with familial myeloproliferative neoplasms

Leukemia(2022)10.1038/s41375-022-01797-6

N/A

0DataRank · unranked

10 citations

Eddie L. Imada, Sergiu Paşca, Shiyu Wang, Hang Chen, Camille Alba +10 more

Hobotnica: exploring molecular signature quality

F1000Research(2022)10.12688/f1000research.74846.2

N/A

0DataRank · unranked

4 citations

Alexey Sizykh, Anna Budkina, Alexander V. Favorov, Bahman Afsari, Sarah J. Wheelan +3 more

Type 1 interferon perturbates clonal competition by reshaping human blood development

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.28.509751

N/A

0DataRank · unranked

2 citations

Danielle Isakov, Shira Rosenberg, Miguel Quijada-Álamo, Mirca Saurty-Seerunghen, Sara Moein +31 more

Unleashing alternative polyadenylation analyses with REPAC

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.14.484280

N/A

0DataRank · unranked

0 citations

Christopher Wilks, Ben Langmead, Luigi Marchionni, Eddie L. Imada

Federated benchmarking of medical artificial intelligence with MedPerf

Nature Machine Intelligence(2023)10.1038/s42256-023-00652-2

N/A

0DataRank · unranked

153 citations

Renato Umeton, Micah Sheller, Alejandro Aristizábal, Johnu George, Anna Wuest +69 more

A Phase 1 Trial of Durvalumab in Combination with Bacillus Calmette-Guerin (BCG) or External Beam Radiation Therapy in Patients with BCG-unresponsive Non-muscle-Invasive Bladder Cancer: The Hoosier Cancer Research Network GU16-243 ADAPT-BLADDER Study

European Urology(2023)10.1016/j.eururo.2023.01.017

N/A

0DataRank · unranked

56 citations

Michael A. O’Donnell, Jason A. Efstathiou, Marianna Zahurak, Gary L. Rosner, Jeff Smith +36 more

REPAC: analysis of alternative polyadenylation from RNA-sequencing data

Genome biology(2023)10.1186/s13059-023-02865-5

N/A

0DataRank · unranked

16 citations

Christopher Wilks, Ben Langmead, Luigi Marchionni, Eddie L. Imada

PhenoSV: interpretable phenotype-aware model for the prioritization of genes affected by structural variants

Nature Communications(2023)10.1038/s41467-023-43651-y

N/A

0DataRank · unranked

16 citations

Quan Li, Luigi Marchionni, Kai Wang, Zhuoran Xu

Using biological constraints to improve prediction in precision oncology

iScience(2023)10.1016/j.isci.2023.106108

N/A

0DataRank · unranked

11 citations

Wikum Dinalankara, Lotte Mulder, Tendai Coady, Claudio Zanettini, Eddie L. Imada +4 more

Notch-based gene signature for predicting the response to neoadjuvant chemotherapy in triple-negative breast cancer

Journal of Translational Medicine(2023)10.1186/s12967-023-04713-3

N/A

0DataRank · unranked

8 citations

Pier Vitale Nuzzo, Francesco Ravera, Sara Bleve, Giuseppe Nicolò Fanelli, Claudio Zanettini +3 more

Concomitant assessment of PD-1 and CD56 expression identifies subsets of resting cord blood Vδ2 T cells with disparate cytotoxic potential

Cellular Immunology(2023)10.1016/j.cellimm.2023.104797

N/A

0DataRank · unranked

4 citations

Claudio Zanettini, Modupe O. Coker, Sarah Boudová, David Rach, Godfrey Mvula +11 more

TP53 structure–function relationships in metastatic castrate‐sensitive prostate cancer and the impact of APR‐246 treatment

The Prostate(2023)10.1002/pros.24629

N/A

0DataRank · unranked

2 citations

Philip Sutera, Triet Nguyen, Jinhee Chang, Shreya Jagtap, Yang Song +22 more

Data from A Primary Xenograft Model of Small-Cell Lung Cancer Reveals Irreversible Changes in Gene Expression Imposed by Culture In vitro

(2023)10.1158/0008-5472.c.6499458

N/A

0DataRank · unranked

0 citations

Luigi Marchionni, Jared S. Hierman, Jonathan T. Rhodes, Wendy L. Devereux, Charles M. Rudin +6 more

Data from Newly Identified Members of FGFR1 Splice Variants Engage in Cross-talk with AXL/AKT Axis in Salivary Adenoid Cystic Carcinoma

(2023)10.1158/0008-5472.c.6512485.v1

N/A

0DataRank · unranked

0 citations

Hyun‐Su Kim, Brandon Leonard, Shizhang Ling, Bhumsuk Keam, Luigi Marchionni +7 more

The cytokine Meteorin-like inhibits anti-tumor CD8+ T cell responses by disrupting mitochondrial function

Immunity(2024)10.1016/j.immuni.2024.07.003

N/A

0DataRank · unranked

44 citations

Ayush Pant, Wikum Dinalankara, John Choi, Aanchal Jain, Ryan T. Nitta +26 more

Validation of an artificial intelligence-based prognostic biomarker in patients with oligometastatic Castration-Sensitive prostate cancer

Radiotherapy and Oncology(2024)10.1016/j.radonc.2024.110618

N/A

0DataRank · unranked

22 citations

Matthew P. Deek, Adrianna A. Mendes, Yang Song, Amol C. Shetty, Soha Bazyar +24 more

Machine learning predicts conventional imaging metastasis-free survival (MFS) for oligometastatic castration-sensitive prostate cancer (omCSPC) using prostate-specific membrane antigen (PSMA) PET radiomics

Radiotherapy and Oncology(2024)10.1016/j.radonc.2024.110443

N/A

0DataRank · unranked

14 citations

Philip Sutera, William Silva Mendes, Bardia Yousefi, Tom Hrinivich, Matthew P. Deek +13 more

Comparison of three machine learning algorithms for classification of B‐cell neoplasms using clinical flow cytometry data

Cytometry Part B Clinical Cytometry(2024)10.1002/cyto.b.22177

N/A

0DataRank · unranked

11 citations

David P. Ng, Luigi Marchionni, Paul D. Simonson, Wikum Dinalankara

Divergent immune microenvironments in two tumor nodules from a patient with mismatch repair-deficient prostate cancer

npj Genomic Medicine(2024)10.1038/s41525-024-00392-1

N/A

0DataRank · unranked

10 citations

Laura A. Sena, Abderrahman Day, Benjamin Miller, Carly D. Miller, John R. Lozada +12 more

Genomic Determinants Associated with Modes of Progression and Patterns of Failure in Metachronous Oligometastatic Castration-sensitive Prostate Cancer

European Urology Oncology(2024)10.1016/j.euo.2024.05.011

N/A

0DataRank · unranked

6 citations

Yang Song, Amol C. Shetty, Keara English, Kim Van der Eecken, Ozan Cem Güler +26 more

Semi-Supervised, Attention-Based Deep Learning for Predicting TMPRSS2:ERG Fusion Status in Prostate Cancer Using Whole Slide Images

Molecular Cancer Research(2024)10.1158/1541-7786.mcr-23-0639

N/A

0DataRank · unranked

3 citations

Zhuoran Xu, Sophie B. Rand, Mohammad K. Alexanderani, Daniela C. Salles, Itzel Valencia +6 more

Emergence of transmissible SARS-CoV-2 variants with decreased sensitivity to antivirals in immunocompromised patients with persistent infections

medRxiv(2024)10.1101/2024.06.14.24308523

N/A

0DataRank · unranked

0 citations

Katherine Johnson, Ruchi Rani, Eli J. Finkelsztein, Leonardo C. Caserta, Rosy Priya Kodiyanplakkal +13 more

Pathogenic variants reveal candidate genes for prostate cancer germline testing for men of African ancestry

Nature Communications(2025)10.1038/s41467-025-63865-6

N/A

0DataRank · unranked

11 citations

Pamela X. Y. Soh, Jue Jiang, Tumisang M. N. Mbeki, Melanie Louw, Daniel Burns +84 more

Epigenetic Treatment Alters Immune-Related Gene Signatures to Increase the Sensitivity of Anti PD-L1 Drugs

Cancers(2025)10.3390/cancers17152431

N/A

0DataRank · unranked

1 citations

Pritam Sadhukhan, Masahiro Shibata, M. Talha Ugurlu, Rachel Goldberg, David Sidransky +4 more

Identifying Rare Germline Variants Associated with Metastatic Prostate Cancer Through an Extreme Phenotype Study

medRxiv(2025)10.1101/2025.04.28.25326584

N/A

0DataRank · unranked

1 citations

Hamideh Sharifi Noghabi, Stanislav Volik, Robert H. Bell, Funda Sar, Anne Haegert +29 more

Causes of evolutionary divergence in prostate cancer.

PubMed(2025)10.48550/arxiv.2503.13189

N/A

0DataRank · unranked

0 citations

Atef Sahli, Valeriia Haberland, Aleksandra Ziuboniewicz, Christopher L. Wirth, G. Steven Bova +50 more

Transcriptome sequencing of Hodgkin lymphoma Hodgkin and Reed-Sternberg cells reveals escape from NK cell recognition and an unfolded protein response

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.05.667241

N/A

0DataRank · unranked

0 citations

Isabella Y. Kong, Wikum Dinalankara, Jonathan Reichel, Matthew Teater, Bhavneet Bhinder +15 more

Transcriptome sequencing of Hodgkin lymphoma Hodgkin and Reed-Sternberg cells reveals escape from NK cell recognition and an unfolded protein response

Research Square(2025)10.21203/rs.3.rs-7957952/v1

N/A

0DataRank · unranked

0 citations

Mikhail Roshal, Isabella Y. Kong, Wikum Dinalankara, Jonathan Reichel, Matthew Teater +16 more

Identifying Personalized Metabolic Signatures in Breast Cancer

Metabolites(2020)10.3390/metabo11010020

N/A

0DataRank · unranked

14 citations

Wikum Dinalankara, John C. Earls, Theo Knijnenburg, Donald Geman, Luigi Marchionni +2 more

Differential gene methylation and expression of HOX transcription factor family in orbitofacial neurofibroma

Acta Neuropathologica Communications(2020)10.1186/s40478-020-00940-7

N/A

0DataRank · unranked

10 citations

Eddie L. Imada, M. Lisa Zhang, Deepak P. Edward, Luigi Marchionni, Fausto J. Rodríguez +1 more

Functional annotation of human long noncoding RNAs via molecular phenotyping

Genome Research(2020)10.1101/gr.254219.119

N/A

0DataRank · unranked

199 citations

Chi Wai Yip, Saumya Agrawal, Jen-Chien Chang, Yari Ciani, Ivan V. Kulakovskiy +95 more

Luigi Marchionni

Indexed papers

Top data-sharing exemplar

Papers