Nicolas A Matentzoglu

European Bioinformatics Institute

Biochemistry, Genetics and Molecular BiologyComputer Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

16.2Author DataRank

Indexed papers

15in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 15 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

The Human Phenotype Ontology in 2024: phenotypes around the world

Nucleic Acids Research(2023)10.1093/nar/gkad1005

Top 6%

3.9DataRank

Top 6%387 citations

Nicolas A Matentzoglu, Ben D Coleman, Eunice B Addo-Lartey, Anna V. Anagnostopoulos, Joel Anderton +95 more

Papers

Driven by 39 papers — median percentile 59. Top paper: “OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies”.

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies

Database(2021)10.1093/database/baab069

N/A

5.0DataRank · unranked

210 citations

Nicolas A Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg +20 more

The Human Phenotype Ontology in 2024: phenotypes around the world

Nucleic Acids Research(2023)10.1093/nar/gkad1005

Top 6%

3.9DataRank

Top 6%387 citations

Nicolas A Matentzoglu, Ben D Coleman, Eunice B Addo-Lartey, Anna V. Anagnostopoulos, Joel Anderton +95 more

KG-COVID-19: A Framework to Produce Customized Knowledge Graphs for COVID-19 Response

Patterns(2020)10.1016/j.patter.2020.100155

Top 7%

3.3DataRank

Top 7%95 citations

Deepak R Unni, Tiffany J. Callahan, Luca Cappelletti, Vida Ravanmehr, Seth Carbon +13 more

Mondo: Unifying diseases for the world, by the world

medRxiv(2022)10.1101/2022.04.13.22273750

Top 8%

2.7DataRank

Top 8%104 citations

Nicolas A Matentzoglu, Sabrina Toro, Joseph E Flack, Harshad Hegde, Deepak R Unni +83 more

The Monarch Initiative in 2024: an analytic platform integrating phenotypes, genes and diseases across species

Nucleic Acids Research(2023)10.1093/nar/gkad1082

Top 14%

1.5DataRank

Top 14%106 citations

Kevin Schaper, Nicolas A Matentzoglu, Vincent Rubinetti, Faisal Alquaddoomi, Corey Cox +39 more

An open source knowledge graph ecosystem for the life sciences

Scientific Data(2024)10.1038/s41597-024-03171-w

Top 15%

1.4DataRank

Top 15%63 citations

Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya B. Taneja, Jordan M Wyrwa +27 more

Characterizing Long COVID: Deep Phenotype of a Complex Condition

eBioMedicine(2021)10.1016/j.ebiom.2021.103722

N/A

0.802DataRank · unranked

209 citations

Nicole A. Vasilevsky, Leigh C Carmody, Diane N. Rafizadeh, Alfred J Anzalone, Marc D. Basson +53 more

The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond

Journal of Biomedical Semantics(2023)10.1186/s13326-023-00283-x

Top 31%

0.648DataRank

Top 31%17 citations

Anne E. Thessen, William D. Duncan, Nicolas A Matentzoglu, Charles Schmitt, Cynthia Grondin +6 more

The Ontology of Biological Attributes (OBA)—computational traits for the life sciences

Mammalian Genome(2023)10.1007/s00335-023-09992-1

Top 33%

0.596DataRank

Top 33%21 citations

James P. Balhoff, Meghan A. Balk, Robyn L. Ball, Susan M. Bello, Anita R. Caron +21 more

Characterizing Long COVID: Deep Phenotype of a Complex Condition

medRxiv(2021)10.1101/2021.06.23.21259416

N/A

0.470DataRank · unranked

22 citations

Madeline A Rock, Nicole A. Vasilevsky, Leigh C Carmody, Diane N. Rafizadeh, Alfred J Anzalone +53 more

The Xenopus phenotype ontology: bridging model organism phenotype data to human health and development

BMC Bioinformatics(2022)10.1186/s12859-022-04636-8

Top 41%

0.466DataRank

Top 41%12 citations

Erik Segerdell, Nicolas A Matentzoglu, Mardi J. Nenni, Joshua D. Fortriede, Stanley Chu +15 more

Brain Data Standards - A method for building data-driven cell-type ontologies

Scientific Data(2023)10.1038/s41597-022-01886-2

N/A

0.457DataRank · unranked

20 citations

Hüseyin Kır, Brian D. Aevermann, Tom Gillespie, Nomi L. Harris, Michael Hawrylycz +15 more

The Unified Phenotype Ontology : a framework for cross-species integrative phenomics

Genetics(2025)10.1093/genetics/iyaf027

Top 45%

0.406DataRank

Top 45%10 citations

Susan M. Bello, Ray Stefancsik, Sarah M. Alghamdi, Anna V. Anagnostopoulos, James P. Balhoff +41 more

OBO Foundry in 2021: Operationalizing Open Data Principles to Evaluate Ontologies

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.01.446587

N/A

0.406DataRank · unranked

14 citations

Nicolas A Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg +20 more

A change language for ontologies and knowledge graphs

Database(2025)10.1093/database/baae133

N/A

0.330DataRank · unranked

8 citations

Jennifer Vendetti, Damien Goutte-Gattat, J. Harry Caufield, Graybeal, John, Nomi L. Harris +7 more

Expanding and refining the Mammalian Phenotype Ontology to enhance disease model discovery

Disease Models & Mechanisms(2025)10.1242/dmm.052385

Top 54%

0.305DataRank

Top 54%5 citations

Anna V. Anagnostopoulos, Leigh C Carmody, Nicolas A Matentzoglu, Cynthia L. Smith, Susan M. Bello

Towards a standard benchmark for phenotype-driven variant and gene prioritisation algorithms: PhEval - Phenotypic inference Evaluation framework

BMC Bioinformatics(2025)10.1186/s12859-025-06105-4

N/A

0.269DataRank · unranked

5 citations

Vinícius de Souza, Katherina G Cortes, Melissa A Haendel, Nomi L. Harris, Daniel Korn +10 more

The Ontology of Biological Attributes (OBA) - Computational Traits for the Life Sciences

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.26.525742

Top 59%

0.254DataRank

Top 59%3 citations

James P. Balhoff, Meghan A. Balk, Robyn L. Ball, Susan M. Bello, Anita R. Caron +21 more

The Planarian Anatomy Ontology: A resource to connect data within and across experimental platforms

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.14.251579

Top 60%

0.248DataRank

Top 60%2 citations

Erin L. Davies, Sofia Robb, Eric Ross, Nicolas A Matentzoglu, Viraj Doddihal +4 more

The Medical Action Ontology: A Tool for Annotating and Analyzing Treatments and Clinical Management of Human Disease

medRxiv(2023)10.1101/2023.07.13.23292612

Top 60%

0.246DataRank

Top 60%3 citations

Michael Gargano, Sabrina Toro, Nicole A. Vasilevsky, Margaret P Adam, Hannah Blau +21 more

A Change Language for Ontologies and Knowledge Graphs

arXiv (Cornell University)(2024)10.48550/arxiv.2409.13906

Top 71%

0.133DataRank

Top 71%1 citations

Vendetti, Jennifer, Goutte-Gattat, Damien, Caufield, J Harry, Graybeal, John B, Nomi L. Harris +7 more

A Simple Standard for Sharing Ontological Mappings (SSSOM)

Database(2022)10.1093/database/baac035

N/A

0.104DataRank · unranked

1 citations

James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew Brush, Tiffany J. Callahan +39 more

An Open-Source Knowledge Graph Ecosystem for the Life Sciences

Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano)(2023)10.48550/arxiv.2307.05727

Top 78%

0.104DataRank

Top 78%1 citations

Ignacio J. Tripodi, Adrianne L. Stefanski, Luca Cappelletti, Sanya B. Taneja, Jordan M Wyrwa +27 more

The Vertebrate Breed Ontology: Toward Effective Breed Data Standardization

Journal of Veterinary Internal Medicine(2025)10.1111/jvim.70133

N/A

0DataRank · unranked

2 citations

Imke Tammen, Nicolas A Matentzoglu, Marius Mather, James P. Balhoff, Elizabeth Esdaile +11 more

Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies

Database(2022)10.1093/database/baac087

N/A

0DataRank · unranked

68 citations

Damien Goutte-Gattat, Shawn Zheng Kai Tan, James P. Balhoff, Seth Carbon, Anita R. Caron +22 more

COVoc and COVTriage: novel resources to support literature triage

Bioinformatics(2022)10.1093/bioinformatics/btac800

N/A

0DataRank · unranked

3 citations

Zoë May Pendlington, Paola Roncaglia, Julien Gobeill, Luc Mottin, Nicolas A Matentzoglu +5 more

Unifying the identification of biomedical entities with the Bioregistry

Scientific Data(2022)10.1038/s41597-022-01807-3

N/A

0DataRank · unranked

33 citations

Meghan A. Balk, Tiffany J. Callahan, Daniel Domingo-Fernández, Melissa A Haendel, Harshad Hegde +14 more

Ubergraph: integrating OBO ontologies into a unified semantic graph

Zenodo (CERN European Organization for Nuclear Research)(2022)10.5281/zenodo.7249759

N/A

0DataRank · unranked

5 citations

Ugur Bayindir, Anita R. Caron, Nicolas A Matentzoglu, David Osumi-Sutherland, Christopher J. Mungall +1 more

KG-Hub—building and exchanging biological knowledge graphs

Bioinformatics(2023)10.1093/bioinformatics/btad418

N/A

0DataRank · unranked

35 citations

Tim Putman, Kevin Schaper, Deepak R Unni, Harshad Hegde, Tiffany J. Callahan +21 more

Ontologizing health systems data at scale: making translational discovery a reality

npj Digital Medicine(2023)10.1038/s41746-023-00830-x

N/A

0DataRank · unranked

21 citations

Adrianne L. Stefanski, Jordan M Wyrwa, Chenjie Zeng, Anna Ostropolets, Juan M. Banda +27 more

The Medical Action Ontology: A tool for annotating and analyzing treatments and clinical management of human disease

Med(2023)10.1016/j.medj.2023.10.003

N/A

0DataRank · unranked

10 citations

Michael Gargano, Sabrina Toro, Nicole A. Vasilevsky, Margaret P Adam, Hannah Blau +21 more

KG-Hub -- Building and Exchanging Biological Knowledge Graphs

arXiv (Cornell University)(2023)10.48550/arxiv.2302.10800

N/A

0DataRank · unranked

0 citations

Tim Putman, Kevin Schaper, Deepak R Unni, Harshad Hegde, Tiffany J. Callahan +21 more

Author Correction: Brain Data Standards - A method for building data-driven cell-type ontologies

Scientific Data(2023)10.1038/s41597-023-02165-4

N/A

0DataRank · unranked

0 citations

Hüseyin Kır, Brian D. Aevermann, Tom Gillespie, Nomi L. Harris, Michael Hawrylycz +15 more

A Simple Standard for Ontological Mappings 2023: Updates on data model, collaborations and tooling

Zenodo (CERN European Organization for Nuclear Research)(2023)10.5281/zenodo.8202395

N/A

0DataRank · unranked

0 citations

Ian Braun, Anita R. Caron, Damien Goutte-Gattat, Benjamin M. Gyori, Nomi L. Harris +11 more

Structured Prompt Interrogation and Recursive Extraction of Semantics (SPIRES): a method for populating knowledge bases using zero-shot learning

Bioinformatics(2024)10.1093/bioinformatics/btae104

N/A

0DataRank · unranked

105 citations

Harshad Hegde, Vincent Emonet, Nomi L. Harris, Marcin P. Joachimiak, Nicolas A Matentzoglu +7 more

Towards a standard benchmark for phenotype-driven variant and gene prioritisation algorithms: PhEval - Phenotypic inference Evaluation framework

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.06.13.598672

N/A

0DataRank · unranked

5 citations

Vinícius de Souza, Katherina G Cortes, Melissa A Haendel, Nomi L. Harris, Daniel Korn +10 more

Mondo: integrating disease terminology across communities

Genetics(2025)10.1093/genetics/iyaf215

N/A

0DataRank · unranked

16 citations

Sabrina Toro, Nicolas A Matentzoglu, Joseph E Flack, Kathleen R. Mullen, Harshad Hegde +95 more

Consistent performance of large language models in rare disease diagnosis across ten languages and 4917 cases

EBioMedicine(2025)10.1016/j.ebiom.2025.105957

N/A

0DataRank · unranked

8 citations

J. Harry Caufield, Yasemin Bridges, Nicolas A Matentzoglu, Michael Gargano, Mario Cazalla +25 more

LinkML: an open data modeling framework

GigaScience(2025)10.1093/gigascience/giaf152

N/A

0DataRank · unranked

4 citations

Harold R. Solbrig, Nomi L. Harris, Patrick Kalita, Mark A. Miller, Sagar Patil +63 more

Nicolas A Matentzoglu

Indexed papers

Top data-sharing exemplar

Papers