Thomas N. Denny

Also affiliated with Clinical Research Institute, Duke University Hospital

Immunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 49 papers. Top paper: “Stabilized HIV-1 envelope immunization induces neutralizing antibodies to the CD4bs and protects macaques against mucosal infection”.

Stabilized HIV-1 envelope immunization induces neutralizing antibodies to the CD4bs and protects macaques against mucosal infection

Science Translational Medicine(2022)10.1126/scitranslmed.abo5598

N/A

0.936DataRank · unranked

40 citations

Robert J. Edwards, Kedamawit Tilahun, Kartik Manne, Xiaozhi Lu, Derek W. Cain +27 more

Neonatal immunity associated with heterologous HIV-1 neutralizing antibody induction in SHIV-infected Rhesus Macaques

Nature Communications(2024)10.1038/s41467-024-54753-6

N/A

0.321DataRank · unranked

7 citations

Hui Li, Xiaoying Shen, Mitchell Martin, Ryan Tuck, Yue Chen +30 more

Validation of the performance and suitability of a new class of FBS optimized for use in single-cell functional assays

Journal of Immunological Methods(2023)10.1016/j.jim.2023.113452

N/A

0.269DataRank · unranked

5 citations

Guido Ferrari, Cassie Porth, Devin Davis, Thomas N. Denny, Sylvia Janetzki +2 more

Multivariate analysis of FcR-mediated NK cell functions identifies unique clustering among humans and rhesus macaques

Frontiers in Immunology(2023)10.3389/fimmu.2023.1260377

N/A

0.208DataRank · unranked

3 citations

Rachel L. Spreng, Brady Hueber, Junsuke Nohara, Derrick Goodman, Cliburn Chan +21 more

SARS-CoV-2 Infections Among Children in the Biospecimens from Respiratory Virus-Exposed Kids (BRAVE Kids) Study

medRxiv(2020)10.1101/2020.08.18.20166835

N/A

0DataRank · unranked

46 citations

Sarah M. Heston, Hailey N. Chambers, Hannah Cunningham, Meghan J. Price, Liliana Suarez +25 more

Chromatin remodeling in peripheral blood cells reflects COVID-19 symptom severity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.04.412155

N/A

0DataRank · unranked

9 citations

Shengli Ding, Micah T. McClain, Thomas W. Burke, Elizabeth Petzold, Hong A. Chung +17 more

Dysregulated transcriptional responses to SARS-CoV-2 in the periphery support novel diagnostic approaches

medRxiv(2020)10.1101/2020.07.20.20155507

N/A

0DataRank · unranked

7 citations

Florica J. Constantine, Ricardo Henao, Yiling Liu, Ephraim L. Tsalik, Thomas W. Burke +11 more

Mucosal Associated Invariant T (MAIT) Cell Responses Differ by Sex in COVID-19

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.01.407148

N/A

0DataRank · unranked

2 citations

Sejiro Littleton, Nicholas Giroux, Rose Mathew, Shengli Ding, Joan Kalnitsky +15 more

Association of HIV-1 Envelope-Specific Breast Milk IgA Responses with Reduced Risk of Postnatal Mother-to-Child Transmission of HIV-1

UNC Libraries(2020)10.17615/nvsr-1v30

N/A

0DataRank · unranked

0 citations

Aaron Deal, Charles van der Horst, Guido Ferrari, Gerald Tegha, Christie Brinkley +20 more

The Center for HIV/AIDS Vaccine Immunology (CHAVI) multi-site quality assurance program for cryopreserved Human Peripheral Blood Mononuclear Cells

UNC Libraries(2020)10.17615/gpnm-nw54

N/A

0DataRank · unranked

0 citations

Leila K. Needham, Susan A. Fiscus, Whitney Binz, Niranjini Moodley, Kelly A. Soderberg +16 more

Initial antibodies binding to HIV-1 gp41 in acutely infected subjects are polyreactive and highly mutated

UNC Libraries(2020)10.17615/49bm-cj85

N/A

0DataRank · unranked

0 citations

Dawn J. Marshall, Eleanor Marshal, Kwan Ki Hwang, Jae Sung Yu, John F. Whitesides +27 more

The Magnitude and Kinetics of the Mucosal HIV-Specific CD8+ T Lymphocyte Response and Virus RNA Load in Breast Milk

UNC Libraries(2020)10.17615/fahv-nt84

N/A

0DataRank · unranked

0 citations

Thomas N. Denny, Andrea Stacey, Norman L. Letvin, Nilu Goonetilleke, Rachel V. Lovingood +7 more

In vitro and in vivo functions of SARS-CoV-2 infection-enhancing and neutralizing antibodies

Cell(2021)10.1016/j.cell.2021.06.021

N/A

0DataRank · unranked

333 citations

Robert J. Edwards, Kartik Manne, David R. Martinez, Alexandra Schäfer, S. Munir Alam +59 more

Neutralizing antibody vaccine for pandemic and pre-emergent coronaviruses

Nature(2021)10.1038/s41586-021-03594-0

N/A

0DataRank · unranked

276 citations

Esther Lee, Robert Parks, David R. Martinez, Dapeng Li, Haiyan Chen +44 more

Severe Acute Respiratory Syndrome Coronavirus 2 Viremia Is Associated With Coronavirus Disease 2019 Severity and Predicts Clinical Outcomes

Clinical Infectious Diseases(2021)10.1093/cid/ciab686

N/A

0DataRank · unranked

140 citations

William Bain, Asma Naqvi, Brittany Staines, Priscila M. S. Castanha, Haopu Yang +22 more

Dysregulated transcriptional responses to SARS-CoV-2 in the periphery

Nature Communications(2021)10.1038/s41467-021-21289-y

N/A

0DataRank · unranked

126 citations

Florica J. Constantine, Ricardo Henao, Yiling Liu, Ephraim L. Tsalik, Thomas W. Burke +15 more

FlowKit: A Python Toolkit for Integrated Manual and Automated Cytometry Analysis Workflows

Frontiers in Immunology(2021)10.3389/fimmu.2021.768541

N/A

0DataRank · unranked

51 citations

John Quinn, Jennifer Enzor, Janet Staats, Sarah M. Mosier, James Almarode +5 more

New SHIVs and Improved Design Strategy for Modeling HIV-1 Transmission, Immunopathogenesis, Prevention, and Cure

Journal of Virology(2021)10.1128/jvi.00071-21

N/A

0DataRank · unranked

45 citations

Shuyi Wang, Fang-Hua Lee, Ryan S. Roark, Alex I. Murphy, Jessica G. Smith +17 more

Mucosal-associated invariant T cell responses differ by sex in COVID-19

Med(2021)10.1016/j.medj.2021.04.008

N/A

0DataRank · unranked

42 citations

Sejiro Littleton, Nicholas Giroux, Rose Mathew, Shengli Ding, Joan Kalnitsky +16 more

Assessment of Simulated Surveillance Testing and Quarantine in a SARS-CoV-2–Vaccinated Population of Students on a University Campus

JAMA Health Forum(2021)10.1001/jamahealthforum.2021.3035

N/A

0DataRank · unranked

11 citations

Kevin McGoff, Anastasia Deckard, Cameron R. Wolfe, Mattia Bonsignori, M. Anthony Moody +5 more

SARS-CoV-2 vaccination induces neutralizing antibodies against pandemic and pre-emergent SARS-related coronaviruses in monkeys

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.17.431492

N/A

0DataRank · unranked

14 citations

Esther Lee, Robert Parks, David R. Martinez, Dapeng Li, Haiyan Chen +38 more

Age-related changes in the upper respiratory microbiome are associated with SARS-CoV-2 susceptibility and illness severity

medRxiv(2021)10.1101/2021.03.20.21252680

N/A

0DataRank · unranked

9 citations

Alexander W. McCumber, Jhoanna N. Aquino, Javier Rodriguez, Sarah M. Heston, Debra J. Lugo +10 more

New SHIVs and Improved Design Strategy for Modeling HIV-1 Transmission, Immunopathogenesis, Prevention and Cure

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.13.426578

N/A

0DataRank · unranked

8 citations

Shuyi Wang, Fang-Hua Lee, Ryan S. Roark, Alex I. Murphy, Jessica G. Smith +17 more

Exosomes decorated with a recombinant SARS-CoV-2 receptor-binding domain as an inhalable COVID-19 vaccine

Nature Biomedical Engineering(2022)10.1038/s41551-022-00902-5

N/A

0DataRank · unranked

265 citations

Kristen D. Popowski, DASHUAI ZHU, Blanca López de Juan Abad, Xianyun Wang, Mengrui Liu +8 more

Breadth of SARS-CoV-2 neutralization and protection induced by a nanoparticle vaccine

Nature Communications(2022)10.1038/s41467-022-33985-4

N/A

0DataRank · unranked

76 citations

David R. Martinez, Alexandra Schäfer, Haiyan Chen, Maggie Barr, Laura L. Sutherland +39 more

Age-Related Changes in the Nasopharyngeal Microbiome Are Associated With Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection and Symptoms Among Children, Adolescents, and Young Adults

Clinical Infectious Diseases(2022)10.1093/cid/ciac184

N/A

0DataRank · unranked

55 citations

Alexander W. McCumber, Jhoanna N. Aquino, Javier Rodriguez, Sarah M. Heston, Debra J. Lugo +11 more

Differential chromatin accessibility in peripheral blood mononuclear cells underlies COVID-19 disease severity prior to seroconversion

Scientific Reports(2022)10.1038/s41598-022-15668-8

N/A

0DataRank · unranked

52 citations

Shengli Ding, Micah T. McClain, Thomas W. Burke, Elizabeth Petzold, Hong A. Chung +19 more

Mapping SARS-CoV-2 antigenic relationships and serological responses

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.28.477987

N/A

0DataRank · unranked

67 citations

Barbara Mühlemann, Xiaoying Shen, Sina Türeli, Eric B. LeGresley, Antonia Netzl +27 more

Breadth of SARS-CoV-2 Neutralization and Protection Induced by a Nanoparticle Vaccine

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.26.477915

N/A

0DataRank · unranked

15 citations

David R. Martinez, Alexandra Schäfer, Haiyan Chen, Maggie Barr, Laura L. Sutherland +39 more

Differential chromatin accessibility in peripheral blood mononuclear cells underlies COVID-19 disease severity prior to seroconversion

Research Square(2022)10.21203/rs.3.rs-1479864/v1

N/A

0DataRank · unranked

1 citations

Shengli Ding, Micah T. McClain, Thomas W. Burke, Elizabeth Petzold, Hong A. Chung +19 more

Mapping SARS-CoV-2 antigenic relationships and serological responses

Science(2023)10.1126/science.adj0070

N/A

0DataRank · unranked

135 citations

Barbara Mühlemann, Xiaoying Shen, Sina Türeli, Eric B. LeGresley, Antonia Netzl +27 more

RADx-UP Testing Core: Access to COVID-19 Diagnostics in Community-Engaged Research with Underserved Populations

Journal of Clinical Microbiology(2023)10.1128/jcm.00367-23

N/A

0DataRank · unranked

5 citations

Timothy Veldman, Mark J. Lee, William A. Glover, L. Gayani Tillekeratne, Coralei E. Neighbors +13 more

COVID-19 Diagnosis and SARS-CoV-2 Strain Identification by a Rapid, Multiplexed, Point-of-Care Antibody Microarray

Analytical Chemistry(2023)10.1021/acs.analchem.2c05180

N/A

0DataRank · unranked

8 citations

Rhett J. Britton, David Kinnamon, Jason Liu, Jack Anderson, Daniel Y. Joh +11 more

Host immunity associated with spontaneous suppression of viremia in therapy-naïve young rhesus macaques following neonatal SHIV infection

Journal of Virology(2023)10.1128/jvi.01094-23

N/A

0DataRank · unranked

5 citations

Madison Berry, Sravani Venkatayogi, Cas LeMaster, Eric S. Geanes, Nicole De Naeyer +14 more

Neonatal SHIV infection in rhesus macaques elicited heterologous HIV-1-neutralizing antibodies

Cell Reports(2023)10.1016/j.celrep.2023.112255

N/A

0DataRank · unranked

6 citations

Hui Li, Xiaoying Shen, Mitchell Martin, Yue Chen, Madison Berry +21 more

Evaluation of SARS-CoV-2 identification methods through surveillance of companion animals in SARS-CoV-2-positive homes in North Carolina, March to December 2020

PeerJ(2023)10.7717/peerj.16310

N/A

0DataRank · unranked

5 citations

Elizabeth Petzold, Diya M. Uthappa, Coralei E. Neighbors, Anna R. Borough, Craig Gin +8 more

Differential host responses within the upper respiratory tract and peripheral blood of children and adults with SARS-CoV-2 infection

medRxiv(2023)10.1101/2023.07.31.23293337

N/A

0DataRank · unranked

6 citations

Aditya Mohan, Trisha Dalapati, Ian A. George, Jhoanna N. Aquino, Debra J. Lugo +17 more

Broadly neutralizing antibody induction by non-stabilized SARS-CoV-2 Spike mRNA vaccination in nonhuman primates

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.18.572191

N/A

0DataRank · unranked

6 citations

Victoria Stalls, Aaron May, Xiaozhi Lu, David R. Martinez, Alexandra Schäfer +40 more

Streamlined Subpopulation, Subtype, and Recombination Analysis of HIV-1 Half-Genome Sequences Generated by High-Throughput Sequencing

UNC Libraries(2023)10.17615/45xh-xt56

N/A

0DataRank · unranked

0 citations

Konstantinos Karagiannis, Myron S. Cohen, Raja Mazumder, Nazia Gulzar, Bhavna Hora +11 more

Sources of variability in Luminex bead-based cytokine assays: Evidence from twelve years of multi-site proficiency testing

Journal of Immunological Methods(2024)10.1016/j.jim.2024.113699

N/A

0DataRank · unranked

10 citations

Heather E. Lynch, Thomas N. Denny, Gregory D. Sempowski, Andrew N. Macintyre, Wes Rountree

T-cell count and T-cell telomere length in patients with severe COVID-19

Frontiers in Immunology(2024)10.3389/fimmu.2024.1356638

N/A

0DataRank · unranked

4 citations

Simon Verhulst, Tsung‐Po Lai, Bruce A. Sullenger, Yunfei Wang, Wes Rountree +5 more

RADx-UP Testing Core: Access to COVID-19 Diagnostics in Community-Engaged Research with Underserved Populations

UNC Libraries(2024)10.17615/jhde-3x93

N/A

0DataRank · unranked

1 citations

Giselle Corbie‐Smith, Mark J. Lee, Michael Cohen‐Wolkowiez, Raghavan Vidya, Shanti Narayanasamy +13 more

Postnatal cytomegalovirus exposure in infants of antiretroviral-treated and untreated HIV-infected mothers

UNC Libraries(2024)10.17615/j4bp-e573

N/A

0DataRank · unranked

0 citations

Emily Patel, G.K. Swamy, Sharon A. Meyer, Elizabeth P. Ehlinger, S.R. Permar +4 more

Decreased variability in the site-specific results during participation in the External Quality Assurance Program Oversight Laboratory (EQAPOL) proficiency program for IFN-gamma enzyme-linked immunospot (IFN-γ ELISpot) assay

Journal of Immunological Methods(2024)10.1016/j.jim.2024.113770

N/A

0DataRank · unranked

0 citations

Cassandra G. Porth, Mark Berrong, Darin J. Weed, Miranda B. Carper, Thomas N. Denny +3 more

Severe Acute Respiratory Syndrome Coronavirus 2 Infections Among Children in the Biospecimens from Respiratory Virus-Exposed Kids (BRAVE Kids) Study

Clinical Infectious Diseases(2020)10.1093/cid/ciaa1693

N/A

0DataRank · unranked

56 citations

Sarah M. Heston, Hailey N. Chambers, Hannah Cunningham, Meghan Price, Lilianna Suarez +26 more

Computationally Selected Multivalent HIV-1 Subtype C Vaccine Protects Against Heterologous SHIV Challenge

Vaccines(2025)10.3390/vaccines13030231

N/A

0DataRank · unranked

2 citations

Marina Tuyishime, Natasha S. Kelkar, Yunfei Wang, Robert Parks, Sampa Santra +25 more

Redirection of Cord Blood T Cells and Natural Killer Cells for Elimination of Autologous HIV-1-Infected Target Cells Using Bispecific DART® Molecules

Frontiers in Immunology(2020)10.3389/fimmu.2020.00713

N/A

0DataRank · unranked

16 citations

R. Whitney Edwards, Shalini Jha, Chia‐Ying K. Lam, Liqin Liu, Gundo Diedrich +7 more

Genetic variability of the U5 and downstream sequence of major HIV-1 subtypes and circulating recombinant forms

Scientific Reports(2020)10.1038/s41598-020-70083-1

N/A

0DataRank · unranked

3 citations

Ming Dong, Jiangqin Zhao, Xue Wang, Aubin Nanfack, Viswanath Ragupathy +4 more

Multiple HIV-1-specific IgG3 responses decline during acute HIV-1: implications for detection of incident HIV infection

DukeSpace (Duke University)(2020)10.17615/0r8q-w086

N/A

0DataRank · unranked

4 citations

Tracy L. Nolen, Thomas N. Denny, Nicole L. Yates, Georgia D. Tomaras, Barton F. Haynes +5 more