Devlina Chakravarty

Also affiliated with United States National Library of Medicine, National Center for Biotechnology Information

Biochemistry, Genetics and Molecular BiologyMaterials Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 14 papers. Top paper: “How to choose templates for modeling of protein complexes: Insights from benchmarking template‐based docking”.

How to choose templates for modeling of protein complexes: Insights from benchmarking template‐based docking

Proteins Structure Function and Bioinformatics(2020)10.1002/prot.25875

N/A

0DataRank · unranked

13 citations

GW McElfresh, Petras J. Kundrotas, Ilya A. Vakser, Devlina Chakravarty

Structural motifs in protein cores and at protein–protein interfaces are different

Protein Science(2020)10.1002/pro.3996

N/A

0DataRank · unranked

11 citations

Devlina Chakravarty, Alexander V. Tuzikov, Nir Ben‐Tal, Petras J. Kundrotas, Ilya A. Vakser +1 more

AlphaFold2 fails to predict protein fold switching

Protein Science(2022)10.1002/pro.4353

N/A

0DataRank · unranked

197 citations

Lauren L. Porter, Devlina Chakravarty

AlphaFold2 fails to predict protein fold switching

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.08.483439

N/A

0DataRank · unranked

5 citations

Lauren L. Porter, Devlina Chakravarty

Identification of a covert evolutionary pathway between two protein folds

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.08.519646

N/A

0DataRank · unranked

2 citations

Shwetha Sreenivasan, Liskin Swint‐Kruse, Lauren L. Porter, Devlina Chakravarty

Identification of a covert evolutionary pathway between two protein folds

Nature Communications(2023)10.1038/s41467-023-38519-0

N/A

0DataRank · unranked

34 citations

Shwetha Sreenivasan, Liskin Swint‐Kruse, Lauren L. Porter, Devlina Chakravarty

Distinguishing features of fold‐switching proteins

Protein Science(2023)10.1002/pro.4596

N/A

0DataRank · unranked

22 citations

Joseph W. Schafer, Lauren L. Porter, Devlina Chakravarty

AlphaFold2 has more to learn about protein energy landscapes

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.12.571380

N/A

0DataRank · unranked

25 citations

Joseph W. Schafer, Ethan A. Chen, Joseph R. Thole, Lauren L. Porter, Devlina Chakravarty

ColabFold predicts alternative protein structures from single sequences, coevolution unnecessary for AF-cluster

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.21.567977

N/A

0DataRank · unranked

19 citations

Devlina Chakravarty, Joseph W. Schafer, Ethan A. Chen, Lauren L. Porter

AlphaFold predictions of fold-switched conformations are driven by structure memorization

Nature Communications(2024)10.1038/s41467-024-51801-z

N/A

0DataRank · unranked

147 citations

Joseph W. Schafer, Ethan A. Chen, Joseph F. Thole, Leslie A. Ronish, Myeongsang Lee +2 more

Sequence clustering confounds AlphaFold2

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.05.574434

N/A

0DataRank · unranked

13 citations

Devlina Chakravarty, Ethan A. Chen, Lauren L. Porter, Joseph W. Schafer

Proteins with alternative folds reveal blind spots in AlphaFold-based protein structure prediction

arXiv (Cornell University)(2024)10.48550/arxiv.2410.14898

N/A

0DataRank · unranked

2 citations

Myeongsang Lee, Lauren L. Porter, Devlina Chakravarty

Proteins with alternative folds reveal blind spots in AlphaFold-based protein structure prediction

Current Opinion in Structural Biology(2025)10.1016/j.sbi.2024.102973

N/A

0DataRank · unranked

68 citations

Myeongsang Lee, Lauren L. Porter, Devlina Chakravarty

Large-scale predictions of alternative protein conformations by AlphaFold2-based sequence association

Nature Communications(2025)10.1038/s41467-025-60759-5

N/A

0DataRank · unranked

24 citations

Joseph W. Schafer, Jeshuwin Prabakaran, Devlina Chakravarty, Madeleine F Clore, Lauren L. Porter +1 more