Aristotelis Tsirigos

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 98 papers. Top paper: “Deep learning integrates histopathology and proteogenomics at a pan-cancer level”.

Deep learning integrates histopathology and proteogenomics at a pan-cancer level

Cell Reports Medicine(2023)10.1016/j.xcrm.2023.101173

N/A

0.843DataRank · unranked

33 citations

Runyu Hong, Elizabeth G. Demicco, Jimin Tan, Rossana Lazcano, André L. Moreira +95 more

The Somatic Mosaicism across Human Tissues Network

Nature(2025)10.1038/s41586-025-09096-7

N/A

0.672DataRank · unranked

43 citations

Ji Won Oh, Yujin Angelina Choi, Nam Seop Lim, Boxun Zhao, Adam Voshall +365 more

Metabolomic, proteomic, and transcriptomic changes in adults with epilepsy on modified Atkins diet

Epilepsia(2023)10.1111/epi.17540

N/A

0.612DataRank · unranked

18 citations

Yik Siu, Aryeh Korman, Ziyan Lin, Evgeny Kanshin, Daniel Friedman +7 more

Genome-wide screening identifies Trim33 as an essential regulator of dendritic cell differentiation

Science Immunology(2024)10.1126/sciimmunol.adi1023

N/A

0.514DataRank · unranked

14 citations

Pei-Feng Hsu, Lorena S. Lopez-Zepeda, Görkem Garipler, Eduardo Esteva, Nicholas M. Adams +15 more

Microbial contributions to oxalate metabolism in health and disease

medRxiv(2020)10.1101/2020.01.27.20018770

N/A

0.400DataRank · unranked

4 citations

Joseph C. Devlin, Jiyuan Hu, Angelina Volkova, Thomas Battaglia, Allyson L. Byrd +7 more

Tumor-intrinsic LKB1-LIF signaling axis establishes a myeloid niche to promote immune evasion and tumor growth

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.15.549147

N/A

0.208DataRank · unranked

3 citations

Ray Pillai, Yuan Hao, Warren L. Wu, Burcu Karadal-Ferrena, Sofia G. Dimitriadoy +30 more

Posttranslational Regulation of the Exon Skipping Machinery Controls Aberrant Splicing in Leukemia

Cancer Discovery(2020)10.1158/2159-8290.cd-19-1436

N/A

0DataRank · unranked

102 citations

Cuijuan Han, Eric Wang, Adam H. Lorch, Valentina Serafin, Byoung-Kyu Cho +39 more

Defining the relative and combined contribution of CTCF and CTCFL to genomic regulation

Genome biology(2020)10.1186/s13059-020-02024-0

N/A

0DataRank · unranked

69 citations

Caryn Ha, Javier Rodriguez-Hernaez, Ali Ranjbaran, Erica Chio, Elphège P. Nora +6 more

Somatic Focal Copy Number Gains of Noncoding Regions of Receptor Tyrosine Kinase Genes in Treatment-Resistant Epilepsy

Journal of Neuropathology & Experimental Neurology(2020)10.1093/jnen/nlaa137

N/A

0DataRank · unranked

11 citations

Javier Hernaez Rodriguez, Cristiana Pelorosso, Kaicen Zhu, Anna Maria Buccoliero, Maristela L. Onozato +23 more

On Epigenetic Plasticity and Genome Topology

Trends in cancer(2020)10.1016/j.trecan.2020.01.006

N/A

0DataRank · unranked

7 citations

Iannis Aifantis, Aristotelis Tsirigos, Charalampos Lazaris

Context-Dependent Requirement of Euchromatic Histone Methyltransferase Activity during Reprogramming to Pluripotency

Stem Cell Reports(2020)10.1016/j.stemcr.2020.08.011

N/A

0DataRank · unranked

8 citations

Alexander Polyzos, Kaushiki Chatterjee, Ly-Sha Ee, Emily Swanzey, Jorge Morales-Valencia +12 more

Epigenetic silencing of the ubiquitin ligase subunit FBXL7 impairs c-SRC degradation and promotes epithelial-to-mesenchymal transition and metastasis

Nature Cell Biology(2020)10.1038/s41556-020-0560-6

N/A

0DataRank · unranked

44 citations

Daniele Simoneschi, Emma Kurz, Arnaldo Arbini, Shaowen Jang, Nicoletta Guaragnella +13 more

Muscle progenitor specification and myogenic differentiation are associated with changes in chromatin topology

Nature Communications(2020)10.1038/s41467-020-19999-w

N/A

0DataRank · unranked

41 citations

Julen Mendieta-Esteban, Alessandro Magli, Karin Lilja, Rita C. R. Perlingeiro, Marc A. Martı́-Renom +3 more

LncRNA RP11-19E11 is an E2F1 target required for proliferation and survival of basal breast cancer

npj Breast Cancer(2020)10.1038/s41523-019-0144-4

N/A

0DataRank · unranked

33 citations

L Q Luo, Alireza Khodadadi‐Jamayran, Michael Thompson, Betül Akgöl Oksuz, Aristotelis Tsirigos +4 more

Decreased cytotoxic T cells and TCR clonality in organ transplant recipients with squamous cell carcinoma

npj Precision Oncology(2020)10.1038/s41698-020-0119-9

N/A

0DataRank · unranked

32 citations

Alireza Khodadadi‐Jamayran, Nicole Doudican, Alexis Santana, Diane Felsen, Anna C. Pavlick +3 more

Ontogeny and Vulnerabilities of Drug-Tolerant Persisters in HER2+ Breast Cancer

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.28.273029

N/A

0DataRank · unranked

14 citations

Jayu Jen, Shaowen Jiang, Azin Sayad, Arvind Singh Mer, Kevin R. Brown +19 more

Mitotic retention of H3K27 acetylation promotes rapid topological and transcriptional resetting of stem cell-related genes and enhancers upon G1 entry

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.02.130104

N/A

0DataRank · unranked

3 citations

Alexander Polyzos, Luke Wojenski, Andreas Kloetgen, Jiexi Li, Dafne Campigli Di Giammartino +4 more

A CRISPR Screen Identifies Myc-associated Zinc Finger Protein (MAZ) as an Insulator Functioning at CTCF boundaries in Hox Clusters

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.25.267237

N/A

0DataRank · unranked

2 citations

Pin-Yao Huang, Hyunwoo Cho, Varun Narendra, Gary LeRoy, Jane A. Skok +4 more

Immunosuppressive milieu of high-risk localized prostate cancer.

Journal of Clinical Oncology(2020)10.1200/jco.2020.38.6_suppl.344

N/A

0DataRank · unranked

0 citations

Dennis O. Adeegbe, Aarif Ahsan, Jiansheng Wu, Alireza Khodadad-Jamayran, Herbert Lepor +13 more

A bipartite element with allele-specific functions safeguards DNA methylation imprints at the Dlk1-Dio3 locus

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.22.103796

N/A

0DataRank · unranked

0 citations

Laurianne Scourzic, Varsha Shah, Emily Swanzey, Andreas Kloetgen, Alexander Polyzos +10 more

N-BLR, a primate-specific non-coding transcript leads to colorectal cancer invasion and migration

UNC Libraries(2020)10.17615/mbqx-8p95

N/A

0DataRank · unranked

0 citations

Gabriel Lopez‐Berestein, Chang Gong Liu, Su Youn Nam, Jing Yi, Manel Esteller +43 more

Regulation of transcriptional elongation in pluripotency and cell differentiation by the PHD-finger protein Phf5a

UNC Libraries(2020)10.17615/tcdm-5z31

N/A

0DataRank · unranked

0 citations

Brian D. Strahl, Charalampos Lazaris, Matthias Stadtfeld, Alexandros Strikoudis, Thomas Trimarchi +9 more

H3K27ac bookmarking promotes rapid post-mitotic activation of the pluripotent stem cell program without impacting 3D chromatin reorganization

Molecular Cell(2021)10.1016/j.molcel.2021.02.032

N/A

0DataRank · unranked

137 citations

Alexander Polyzos, Luke Wojenski, Andreas Kloetgen, Jiexi Li, Dafne Campigli Di Giammartino +5 more

Autoantibody-mediated impairment of DNASE1L3 activity in sporadic systemic lupus erythematosus

The Journal of Experimental Medicine(2021)10.1084/jem.20201138

N/A

0DataRank · unranked

125 citations

Lee Serpas, Yueyang Wang, Ali Rashidfarrokhi, Oriana A. Perez, Benjamin Sally +18 more

Combined Inhibition of SHP2 and CXCR1/2 Promotes Antitumor T-cell Response in NSCLC

Cancer Discovery(2021)10.1158/2159-8290.cd-21-0369

N/A

0DataRank · unranked

103 citations

Shuai Li, Alireza Khodadadi‐Jamayran, Jayu Jen, Han Han, Kayla Guidry +13 more

Surface antigen-guided CRISPR screens identify regulators of myeloid leukemia differentiation

Cell stem cell(2021)10.1016/j.stem.2020.12.005

N/A

0DataRank · unranked

69 citations

Hua Zhou, Bettina Nadorp, Geraldine Cayanan, Xufeng Chen, Anna H. Yeaton +9 more

Deep Learning and Pathomics Analyses Reveal Cell Nuclei as Important Features for Mutation Prediction of BRAF-Mutated Melanomas

Journal of Investigative Dermatology(2021)10.1016/j.jid.2021.09.034

N/A

0DataRank · unranked

48 citations

Sofia Nomikou, Nicolas Coudray, George Jour, Zarmeena Dawood, Runyu Hong +15 more

Targeting the Atf7ip–Setdb1 Complex Augments Antitumor Immunity by Boosting Tumor Immunogenicity

Cancer Immunology Research(2021)10.1158/2326-6066.cir-21-0543

N/A

0DataRank · unranked

40 citations

Alireza Khodadadi‐Jamayran, Igor Dolgalev, Hyunwoo Cho, Sana Badri, Luis Chiriboga +28 more

Smc3 dosage regulates B cell transit through germinal centers and restricts their malignant transformation

Nature Immunology(2021)10.1038/s41590-020-00827-8

N/A

0DataRank · unranked

40 citations

Cem Meydan, Christopher R. Chin, Matt F. Challman, Daleum Kim, Bhavneet Bhinder +16 more

A bipartite element with allele-specific functions safeguards DNA methylation imprints at the Dlk1-Dio3 locus

Developmental Cell(2021)10.1016/j.devcel.2021.10.004

N/A

0DataRank · unranked

27 citations

Laurianne Scourzic, Veevek Shah, Emily Swanzey, Andreas Kloetgen, Alexander Polyzos +13 more

Distinct Transcriptomic Profiles in the Dorsal Hippocampus and Prelimbic Cortex Are Transiently Regulated following Episodic Learning

Journal of Neuroscience(2021)10.1523/jneurosci.1557-20.2021

N/A

0DataRank · unranked

19 citations

Alireza Khodadadi‐Jamayran, Dana Kapeller-Libermann, Xiaojing Ye, Aristotelis Tsirigos, Adriana Heguy +2 more

Co-targeting of BAX and BCL-XL proteins broadly overcomes resistance to apoptosis in cancer

Nature Communications(2022)10.1038/s41467-022-28741-7

N/A

0DataRank · unranked

192 citations

Denis E. Reyna, Nadege Gitego, Felix Kopp, Hua Zhou, Miguel A. Miranda-Román +7 more

An inflammatory state remodels the immune microenvironment and improves risk stratification in acute myeloid leukemia

Nature Cancer(2022)10.1038/s43018-022-00480-0

N/A

0DataRank · unranked

149 citations

Bettina Nadorp, Maarten Fornerod, Deedra Nicolet, Huiyun Wu, Christopher J. Walker +17 more

Modulating mitofusins to control mitochondrial function and signaling

Nature Communications(2022)10.1038/s41467-022-31324-1

N/A

0DataRank · unranked

114 citations

Bogos Agianian, Vasantha Kumar MV, Nikolaos Biris, Thomas P. Garner, Inna Rabinovich-Nikitin +16 more

Clonal lineage tracing reveals shared origin of conventional and plasmacytoid dendritic cells

Immunity(2022)10.1016/j.immuni.2022.01.016

N/A

0DataRank · unranked

101 citations

Joseph N. Pucella, Geunhyo Jang, Marcela Alcántara‐Hernández, Samik Upadhaya, Nicholas M. Adams +9 more

CRISPR and biochemical screens identify MAZ as a cofactor in CTCF-mediated insulation at Hox clusters

Nature Genetics(2022)10.1038/s41588-021-01008-5

N/A

0DataRank · unranked

98 citations

Pin-Yao Huang, Hyunwoo Cho, Varun Narendra, Gary LeRoy, Edgar González-Buendía +5 more

The Impact of Inflammation-Induced Tumor Plasticity during Myeloid Transformation

Cancer Discovery(2022)10.1158/2159-8290.cd-21-1146

N/A

0DataRank · unranked

95 citations

Geraldine Cayanan, Sanam Loghavi, Igor Dolgalev, Emmett M. Leddin, Christian E. Loo +19 more

Single-cell RNA sequencing reveals distinct T cell populations in immune-related adverse events of checkpoint inhibitors

Cell Reports Medicine(2022)10.1016/j.xcrm.2022.100868

N/A

0DataRank · unranked

82 citations

Brian S. Henick, Robert Winchester, Shalom Lerrer, Kieran Adam, Yevgeniya Gartshteyn +12 more

Altered BAF occupancy and transcription factor dynamics in PBAF-deficient melanoma

Cell Reports(2022)10.1016/j.celrep.2022.110637

N/A

0DataRank · unranked

43 citations

Christie B. Nguyen, Elena Grossi, Dan Filipescu, Aktan Alpsoy, Alisha Dhiman +12 more

Single cell RNA-seq of human cornea organoids identifies cell fates of a developing immature cornea

PNAS Nexus(2022)10.1093/pnasnexus/pgac246

N/A

0DataRank · unranked

37 citations

Maithê Rocha Monteiro de Barros, Nan Hu, Igor Dolgalev, Mona Roshan, James W. Foster +4 more

DNA Methylation Profiling Identifies Subgroups of Lung Adenocarcinoma with Distinct Immune Cell Composition, DNA Methylation Age, and Clinical Outcome

Clinical Cancer Research(2022)10.1158/1078-0432.ccr-22-0391

N/A

0DataRank · unranked

31 citations

Varshini Vasudevaraja, Kristen Labbe, Hussein Mohamed, Jonathan Serrano, Brett W. Guidry +12 more

ACE2-containing defensosomes serve as decoys to inhibit SARS-CoV-2 infection

PLoS Biology(2022)10.1371/journal.pbio.3001754

N/A

0DataRank · unranked

30 citations

Maren de Vries, Juan Gago, Kristen Dancel-Manning, Joseph Sall, William J. Rice +11 more

Lineage-coupled clonal capture identifies clonal evolution mechanisms and vulnerabilities of BRAFV600E inhibition resistance in melanoma

Cell Discovery(2022)10.1038/s41421-022-00462-7

N/A

0DataRank · unranked

9 citations

Yingwen Ding, Ravesanker Ezhilarasan, Tenzin Lhakhang, Qianghu Wang, Jie Yang +8 more

Single-Cell RNA Sequencing Reveals the Effects of Chemotherapy on Human Pancreatic Adenocarcinoma and its Tumor Microenvironment

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.24.493132

N/A

0DataRank · unranked

17 citations

Daniel Weissinger, Emily Kawaler, Ende Zhao, Despoina Kalfakakou, Surajit Dhara +16 more

Cell type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.05.483136

N/A

0DataRank · unranked

8 citations

Nina Shenker-Tauris, Javier Rodriguez-Hernaez, Eric Wang, Theodore Sakellaropoulos, Francesco Boccalatte +7 more

NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.24.481835

N/A

0DataRank · unranked

4 citations

Nikki A. Evensen, Jason Saliba, Joanna Pierro, Mignon L. Loh, Patrick A. Brown +7 more

Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.10.516003

N/A

0DataRank · unranked

3 citations

Hua Zhou, Nina Shenker-Tauris, Hortense Le, Theodore Sakellaropoulos, Nicolas Coudray +32 more

Baseline peripheral T-cell composition in relation to radiographic phenotypes of immune-related pneumonitis.

Journal of Clinical Oncology(2022)10.1200/jco.2022.40.16_suppl.2545

N/A

0DataRank · unranked

0 citations

Shoiab Bukhari, Robert Winchester, Ziyan Lin, Alireza Khodadad-Jamayran, Aristotelis Tsirigos +12 more

Single-cell RNA sequencing reveals the effects of chemotherapy on human pancreatic adenocarcinoma and its tumor microenvironment

Nature Communications(2023)10.1038/s41467-023-36296-4

N/A

0DataRank · unranked

278 citations

Daniel Weissinger, Emily Kawaler, Ende Zhao, Despoina Kalfakakou, Surajit Dhara +18 more

KEAP1 mutation in lung adenocarcinoma promotes immune evasion and immunotherapy resistance

Cell Reports(2023)10.1016/j.celrep.2023.113295

N/A

0DataRank · unranked

137 citations

Ray Pillai, Yuan Hao, Warren L. Wu, Eric Bartnicki, Triantafyllia Karakousi +22 more

Cell-type-specific prediction of 3D chromatin organization enables high-throughput in silico genetic screening

Nature Biotechnology(2023)10.1038/s41587-022-01612-8

N/A

0DataRank · unranked

130 citations

Nina Shenker-Tauris, Javier Rodriguez-Hernaez, Eric Wang, Theodore Sakellaropoulos, Francesco Boccalatte +7 more

Mitophagy Promotes Resistance to BH3 Mimetics in Acute Myeloid Leukemia

Cancer Discovery(2023)10.1158/2159-8290.cd-22-0601

N/A

0DataRank · unranked

78 citations

Xufeng Chen, Emmanouil Zacharioudakis, Wafa Al-Santli, Hua Zhou, Bettina Nadorp +16 more

Stepwise activities of mSWI/SNF family chromatin remodeling complexes direct T cell activation and exhaustion

Molecular Cell(2023)10.1016/j.molcel.2023.02.026

N/A

0DataRank · unranked

73 citations

Kimberlee A. Hixon, Dawn E. Comstock, Clayton K. Collings, Xufeng Chen, Javier Rodríguez Hernáez +14 more

3D Enhancer–promoter networks provide predictive features for gene expression and coregulation in early embryonic lineages

Nature Structural & Molecular Biology(2023)10.1038/s41594-023-01130-4

N/A

0DataRank · unranked

49 citations

Eralda Salataj, Dafne Campigli Di Giammartino, Javier Rodriguez-Hernaez, Andreas Kloetgen, Vidur Garg +10 more

Clinical utility of whole-genome DNA methylation profiling as a primary molecular diagnostic assay for central nervous system tumors—A prospective study and guidelines for clinical testing

Neuro-Oncology Advances(2023)10.1093/noajnl/vdad076

N/A

0DataRank · unranked

33 citations

Varshini Vasudevaraja, Jonathan Serrano, Guomiao Shen, Ivy Tran, Nancy Abdallat +57 more

Loss of Notch signaling in skeletal stem cells enhances bone formation with aging

Bone Research(2023)10.1038/s41413-023-00283-8

N/A

0DataRank · unranked

31 citations

Kevin Leclerc, Malissa Ramsukh, Ziyan Lin, Sooyeon Lee, Backialakshmi Dharmalingam +14 more

Inflammation in the tumor-adjacent lung as a predictor of clinical outcome in lung adenocarcinoma

Nature Communications(2023)10.1038/s41467-023-42327-x

N/A

0DataRank · unranked

29 citations

Hua Zhou, Nina Murrell, Hortense Le, Theodore Sakellaropoulos, Nicolas Coudray +35 more

An epigenetic switch controls an alternative NR2F2 isoform that unleashes a metastatic program in melanoma

Nature Communications(2023)10.1038/s41467-023-36967-2

N/A

0DataRank · unranked

25 citations

Claudia D. Lovell, Richard Von Itter, Igor Dolgalev, Praveen Agrawal, Gillian Baptiste +16 more

An Anterior Second Heart Field Enhancer Regulates the Gene Regulatory Network of the Cardiac Outflow Tract

Circulation(2023)10.1161/circulationaha.123.065700

N/A

0DataRank · unranked

18 citations

Ernest W. Chang, Ziyan Lin, Akshay Shekhar, Lei Bu, Alireza Khodadadi‐Jamayran +6 more

Integrative CRISPR Activation and Small Molecule Inhibitor Screening for lncRNA Mediating BRAF Inhibitor Resistance in Melanoma

Biomedicines(2023)10.3390/biomedicines11072054

N/A

0DataRank · unranked

9 citations

Andreas Kloetgen, Stavroula Petroulia, Kathryn Hockemeyer, Sonja Sievers, Aristotelis Tsirigos +3 more

NSD2 E1099K drives relapse in pediatric acute lymphoblastic leukemia by disrupting 3D chromatin organization

Genome biology(2023)10.1186/s13059-023-02905-0

N/A

0DataRank · unranked

15 citations

Nikki A. Evensen, Jason Saliba, Joanna Pierro, Mignon L. Loh, Patrick A. Brown +8 more

Haplodeficiency of the 9p21 tumor suppressor locus causes myeloid disorders driven by the bone marrow microenvironment

Blood(2023)10.1182/blood.2022018512

N/A

0DataRank · unranked

9 citations

Pei-Feng Hsu, Eduardo Esteva, Rossella Labella, Yueyang Wang, Alireza Khodadadi‐Jamayran +7 more

Connecting Chromatin Structures to Gene Regulation Using Dynamic Polymer Simulations

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.07.566032

N/A

0DataRank · unranked

6 citations

Tianxiao Zhao, Finnegan Clark, Sofia Nomikou, Aristotelis Tsirigos, Timothée Lionnet +1 more

Self-supervised artificial intelligence predicts recurrence, metastasis and disease specific death from primary cutaneous squamous cell carcinoma at diagnosis

Research Square(2023)10.21203/rs.3.rs-3607399/v1

N/A

0DataRank · unranked

3 citations

Nicolas Coudray, Michelle C. Juarez, Maressa C. Criscito, Adalberto Claudio Quiros, Reason Wilken +13 more

The validity of a machine learning algorithm in predicting response to immune checkpoint inhibitors in melanoma.

Journal of Clinical Oncology(2023)10.1200/jco.2023.41.16_suppl.9523

N/A

0DataRank · unranked

1 citations

Nicolas Coudray, George Jour, Clara Goldberg, Paul Johannet, Alexander C. Huang +6 more

Systematic mapping and modeling of 3D enhancer-promoter interactions in early mouse embryonic lineages reveal regulatory principles that determine the levels and cell-type specificity of gene expression

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.19.549714

N/A

0DataRank · unranked

1 citations

Eralda Salataj, Dafne Campigli Di Giammartino, Javier Rodriguez-Hernaez, Andreas Kloetgen, Vidur Garg +10 more

SETD2 mutations do not contribute to clonal fitness in response to chemotherapy in childhood B cell acute lymphoblastic leukemia

Leukemia & lymphoma/Leukemia and lymphoma(2023)10.1080/10428194.2023.2273752

N/A

0DataRank · unranked

0 citations

Gabriel Robbins, Ashfiyah Chowdhury, Sonali Narang, Talia H. Ostrow, Harrison L. Kilberg +7 more

Metabolic coordination between skin epithelium and type 17 immunity sustains chronic skin inflammation

Immunity(2024)10.1016/j.immuni.2024.04.022

N/A

0DataRank · unranked

89 citations

Piotr Konieczny, Aleksandr Prystupa, Rochelle Castillo, Erica Sze-Tu, Yue Xing +12 more

Mapping the landscape of histomorphological cancer phenotypes using self-supervised learning on unannotated pathology slides

Nature Communications(2024)10.1038/s41467-024-48666-7

N/A

0DataRank · unranked

64 citations

Nicolas Coudray, Anna H. Yeaton, Xinyu Yang, Bojing Liu, Hortense Le +11 more

Glutamine antagonist DRP-104 suppresses tumor growth and enhances response to checkpoint blockade in KEAP1 mutant lung cancer

Science Advances(2024)10.1126/sciadv.adm9859

N/A

0DataRank · unranked

63 citations

Sarah E. Leboeuf, Yuan Hao, Connie New, Jenna L. E. Blum, Ali Rashidfarrokhi +23 more

Members of an array of zinc-finger proteins specify distinct Hox chromatin boundaries

Molecular Cell(2024)10.1016/j.molcel.2024.08.007

N/A

0DataRank · unranked

21 citations

Pin-Yao Huang, Edgar González-Buendía, Hyunwoo Cho, Sang Yong Kim, Aristotelis Tsirigos +3 more

3D chromatin hubs as regulatory units of identity and survival in human acute leukemia

Molecular Cell(2024)10.1016/j.molcel.2024.11.040

N/A

0DataRank · unranked

16 citations

Francesco Boccalatte, Javier Rodríguez Hernáez, Ziyan Lin, Bettina Nadorp, Alexander Polyzos +8 more

Clonal evolution of the 3D chromatin landscape in patients with relapsed pediatric B-cell acute lymphoblastic leukemia

Nature Communications(2024)10.1038/s41467-024-51492-6

N/A

0DataRank · unranked

15 citations

Yohana Ghebrechristos, Nikki A. Evensen, Nina Murrell, Sylwia Jasinski, Talia H. Ostrow +8 more

The stress response regulator HSF1 modulates natural killer cell anti-tumour immunity

Nature Cell Biology(2024)10.1038/s41556-024-01490-z

N/A

0DataRank · unranked

11 citations

Theodore Sakellaropoulos, Xufeng Chen, Olha Ivashkiv, Maria Sirenko, Hua Zhou +15 more

Lung Microbial and Host Genomic Signatures as Predictors of Prognosis in Early-Stage Adenocarcinoma

Cancer Epidemiology Biomarkers & Prevention(2024)10.1158/1055-9965.epi-24-0661

N/A

0DataRank · unranked

6 citations

Fares Darawshy, Chan Wang, Benjamin Kwok, Kendrew K. Wong, Benjamin G. Wu +27 more

MetFinder: A Tool for Automated Quantitation of Metastatic Burden in Histological Sections From Preclinical Models

Pigment Cell & Melanoma Research(2024)10.1111/pcmr.13195

N/A

0DataRank · unranked

1 citations

Nicolas Coudray, Erol C. Bayraktar, Kristyn Galbraith, George Jour, Arman Alberto Sorin Shadaloey +15 more

Self-Supervised Learning Reveals Clinically Relevant Histomorphological Patterns for Therapeutic Strategies in Colon Cancer

ENLIGHTEN (Jurnal Bimbingan dan Konseling Islam)(2024)10.1101/2024.02.26.582106

N/A

0DataRank · unranked

8 citations

Meaghan Polack, Nicolas Coudray, Adalberto Claudio Quiros, Theodore Sakellaropoulos, A. Stijn L. P. Crobach +6 more

Binding domain mutations provide insight into CTCF’s relationship with chromatin and its contribution to gene regulation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.11.575070

N/A

0DataRank · unranked

5 citations

Guimei Jiang, Giulia Cova, Christos C. Katsifis, Domenic N. Narducci, Theodore Sakellaropoulos +10 more

Universal Receptive System as a novel regulator of transcriptomic activity of Staphylococcus aureus

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.11.612522

N/A

0DataRank · unranked

2 citations

Kristina Kardava, Maria Vecherkovskaya, Alireza Khodadadi‐Jamayran, Aristotelis Tsirigos, Victor Tetz +1 more

Connecting Chromatin Structures to Gene Regulation Using Dynamic Polymer Simulations

eLife(2024)10.7554/elife.94738

N/A

0DataRank · unranked

1 citations

Tianxiao Zhao, Finnegan Clark, Sofia Nomikou, Aristotelis Tsirigos, Timothée Lionnet +1 more

Brain and cancer associated binding domain mutations provide insight into CTCF’s relationship with chromatin and its ability to act as a chromatin organizer

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