Melike Lakadamyali

Also affiliated with University of Pennsylvania

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 6%percentile

0.241Author DataRank

Indexed papers

1in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

O-SNAP: A comprehensive pipeline for spatial profiling of chromatin architecture

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.18.665612

Top 61%

0.241DataRank

Top 61%4 citations

José Luis Gómez Sarmiento, Flávio R. Palma, Aayush Kant, Ellen Y. Zhang, Zixian Guo +6 more

Papers

Driven by 36 papers — median percentile 39. Top paper: “Multiple allelic configurations govern long-range Shh enhancer-promoter communication in the embryonic forebrain”.

Multiple allelic configurations govern long-range Shh enhancer-promoter communication in the embryonic forebrain

Molecular Cell(2024)10.1016/j.molcel.2024.10.042

N/A

0.322DataRank · unranked

6 citations

Jeewon R Lee, Son C. Nguyen, Arian Arab, Staci M. Rakowiecki, Siewert Hugelier +10 more

O-SNAP: A comprehensive pipeline for spatial profiling of chromatin architecture

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.18.665612

Top 61%

0.241DataRank

Top 61%4 citations

José Luis Gómez Sarmiento, Flávio R. Palma, Aayush Kant, Ellen Y. Zhang, Zixian Guo +6 more

Two-parameter single-molecule analysis for measurement of chromatin mobility

STAR Protocols(2020)10.1016/j.xpro.2020.100223

N/A

0DataRank · unranked

11 citations

Pablo Aurelio Gómez-García, Ryan L. McCarthy, Zhe Liu, Melike Lakadamyali, Kenneth S. Zaret +1 more

Cega: A Single Particle Segmentation Algorithm to Identify Moving Particles in a Noisy System

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.24.424334

N/A

0DataRank · unranked

1 citations

Peter K. Relich, E. Michael Ostap, Erika L.F. Holzbaur, Melike Lakadamyali, Erin M. Masucci

Faculty Opinions recommendation of Nanoscale subcellular architecture revealed by multicolor three-dimensional salvaged fluorescence imaging.

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature(2020)10.3410/f.737165092.793569675

N/A

0DataRank · unranked

0 citations

Melike Lakadamyali

Single-molecule localization microscopy

Nature Reviews Methods Primers(2021)10.1038/s43586-021-00038-x

N/A

0DataRank · unranked

986 citations

Melina Theoni Gyparaki, Gerti Beliu, Florian Schueder, Juliette Griffié, Suliana Manley +5 more

Transcription-mediated supercoiling regulates genome folding and loop formation

Molecular Cell(2021)10.1016/j.molcel.2021.06.009

N/A

0DataRank · unranked

116 citations

Laura Martin, Álvaro Castells-García, Pablo Aurelio Gómez-García, Chiara Vicario, Davide Carnevali +9 more

Distinct properties and functions of CTCF revealed by a rapidly inducible degron system

Cell Reports(2021)10.1016/j.celrep.2021.108783

N/A

0DataRank · unranked

99 citations

Guanjue Xiang, Pablo Aurelio Gómez-García, Jacob M. Tome, Zhe Zhang, Marit W. Vermunt +11 more

Mesoscale Modeling and Single-Nucleosome Tracking Reveal Remodeling of Clutch Folding and Dynamics in Stem Cell Differentiation

Cell Reports(2021)10.1016/j.celrep.2020.108614

N/A

0DataRank · unranked

82 citations

Stephanie Portillo‐Ledesma, Maria Victoria Neguembor, Martina Pesaresi, Walaa Oweis, Talia Miriam Rohrlich +6 more

Chemo-Mechanical Cues Modulate Nano-Scale Chromatin Organization in Healthy and Diseased Connective Tissue Cells

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.27.441596

N/A

0DataRank · unranked

8 citations

Shreyasi Thakur, Xingyu Chen, Claudia Loebel, Boao Xia, Rowena McBeath +5 more

Kinesin-4 Motor Teams Effectively Navigate Dendritic Microtubule Arrays Through Track Switching and Regulation of Microtubule Dynamics

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.02.28.433181

N/A

0DataRank · unranked

2 citations

Peter K. Relich, Melike Lakadamyali, E. Michael Ostap, Erika L.F. Holzbaur, Erin M. Masucci

Aberrant chromatin reorganization in cells from diseased fibrous connective tissue in response to altered chemomechanical cues

Nature Biomedical Engineering(2022)10.1038/s41551-022-00910-5

N/A

0DataRank · unranked

86 citations

Shreyasi Thakur, Xingyu Chen, Claudia Loebel, Boao Xia, Rowena McBeath +5 more

Actin polymerization promotes invagination of flat clathrin-coated lattices in mammalian cells by pushing at lattice edges

Nature Communications(2022)10.1038/s41467-022-33852-2

N/A

0DataRank · unranked

40 citations

Patricia Colosi, Siewert Hugelier, Daniel Zabezhinsky, Melike Lakadamyali, Tatyana Svitkina +1 more

MiOS, an integrated imaging and computational strategy to model gene folding with nucleosome resolution

Nature Structural & Molecular Biology(2022)10.1038/s41594-022-00839-y

N/A

0DataRank · unranked

27 citations

Juan Pablo Arcon, Diana Buitrago, Rafael Lema, Jürgen Walther, Ximena Garate +12 more

Single nucleosome tracking to study chromatin plasticity

Current Opinion in Cell Biology(2022)10.1016/j.ceb.2021.12.005

N/A

0DataRank · unranked

23 citations

Melike Lakadamyali

Myo19 tethers mitochondria to endoplasmic reticulum-associated actin to promote mitochondrial fission

Journal of Cell Science(2023)10.1242/jcs.260612

N/A

0DataRank · unranked

52 citations

Cameron P. Thompson, Qing Tang, Elana E. Baltrusaitis, Joseph A. Rhodenhiser, Omar A. Quintero +4 more

Quantitative Single-Molecule Localization Microscopy

Annual Review of Biophysics(2023)10.1146/annurev-biophys-111622-091212

N/A

0DataRank · unranked

46 citations

Patricia Colosi, Melike Lakadamyali, Siewert Hugelier

ECLiPSE: A Versatile Classification Technique for Structural and Morphological Analysis of Super-Resolution Microscopy Data

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.10.540077

N/A

0DataRank · unranked

4 citations

Hannah Kim, Melina Theoni Gyparaki, Charles S. Bond, Qing Tang, Adriana N. Santiago-Ruiz +3 more

Active Transcription and Epigenetic Reactions Synergistically Regulate Meso-Scale Genomic Organization

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.21.537822

N/A

0DataRank · unranked

0 citations

Zixian Guo, Vinayak Vinayak, Maria Victoria Neguembor, Wing Shun Li, Vasundhara Agrawal +7 more

eLife Assessment: Expansion-assisted selective plane illumination microscopy for nanoscale imaging of centimeter-scale tissues

(2023)10.7554/elife.91979.1.sa2

N/A

0DataRank · unranked

0 citations

Melike Lakadamyali

FMRP regulates MFF translation to locally direct mitochondrial fission in neurons

Nature Cell Biology(2024)10.1038/s41556-024-01544-2

N/A

0DataRank · unranked

39 citations

Ruchao Peng, Charles Bond, Siewert Hugelier, Melike Lakadamyali, Yi‐Wei Chang +3 more

Heterogeneity of late endosome/lysosomes shown by multiplexed DNA-PAINT imaging

The Journal of Cell Biology(2024)10.1083/jcb.202403116

N/A

0DataRank · unranked

31 citations

Siewert Hugelier, J. Xing, Elena M. Sorokina, Melike Lakadamyali, Charles Bond

Active transcription and epigenetic reactions synergistically regulate meso-scale genomic organization

Nature Communications(2024)10.1038/s41467-024-48698-z

N/A

0DataRank · unranked

30 citations

Zixian Guo, Vinayak Vinayak, Maria Victoria Neguembor, Wing Shun Li, Vasundhara Agrawal +7 more

Dissecting gene activation and chromatin remodeling dynamics in single human cells undergoing reprogramming

Cell Reports(2024)10.1016/j.celrep.2024.114170

N/A

0DataRank · unranked

18 citations

Maria Pia Cosma, Melike Lakadamyali, Jose A. Martinez-Sarmiento

ECLiPSE: a versatile classification technique for structural and morphological analysis of 2D and 3D single-molecule localization microscopy data

Nature Methods(2024)10.1038/s41592-024-02414-3

N/A

0DataRank · unranked

13 citations

Qing Tang, Hannah Kim, Melina Theoni Gyparaki, Charles Bond, Adriana N. Santiago-Ruiz +3 more

From feulgen to modern methods: marking a century of DNA imaging advances

Histochemistry and Cell Biology(2024)10.1007/s00418-024-02291-z

N/A

0DataRank · unranked

6 citations

Melike Lakadamyali

Microscopy methods to visualize nuclear organization in biomechanical studies

Current Opinion in Biomedical Engineering(2024)10.1016/j.cobme.2024.100528

N/A

0DataRank · unranked

5 citations

Melike Lakadamyali, Hannah Kim

Toward a comprehensive view of gene architecture during transcription

Current Opinion in Genetics & Development(2024)10.1016/j.gde.2024.102154

N/A

0DataRank · unranked

2 citations

Melike Lakadamyali, Marcus A. Woodworth

Super-Resolution Imaging Uncovers Nanoscale Tau Aggregate Hyperphosphorylation Patterns in Human Alzheimer’s Disease Brain Tissue

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.24.590893

N/A

0DataRank · unranked

1 citations

Siewert Hugelier, Charles R. Bond, Edward B. Lee, Melike Lakadamyali, Adriana N. Santiago-Ruiz

eLife Assessment: Hypersensitivity of the vimentin cytoskeleton to net-charge states and Coulomb repulsion

(2024)10.7554/elife.99568.1.sa3

N/A

0DataRank · unranked

0 citations

Melike Lakadamyali

eLife Assessment: Connecting Chromatin Structures to Gene Regulation Using Dynamic Polymer Simulations

(2024)10.7554/elife.94738.2.sa2

N/A

0DataRank · unranked

0 citations

Melike Lakadamyali

Revealing the biophysics of lamina-associated domain formation by integrating theoretical modeling and high-resolution imaging

Nature Communications(2025)10.1038/s41467-025-63244-1

N/A

0DataRank · unranked

13 citations

Zixian Guo, Aayush Kant, Ramin Basir, Rohit Joshi, Vinayak Vinayak +5 more

Polymer model integrates imaging and sequencing to reveal how nanoscale heterochromatin domains influence gene expression

Nature Communications(2025)10.1038/s41467-025-59001-z

N/A

0DataRank · unranked

7 citations

Ramin Basir, Rosela Golloshi, Joshua Toth, Lucas E. Sant’Anna, Melike Lakadamyali +3 more

Two-Parameter Mobility Assessments Discriminate Diverse Regulatory Factor Behaviors in Chromatin

Molecular Cell(2020)10.1016/j.molcel.2020.05.036

N/A

0DataRank · unranked

129 citations

Pablo Aurelio Gómez-García, Ryan L. McCarthy, Zhe Liu, Melike Lakadamyali, Kenneth S. Zaret +1 more

eLife Assessment: Beyond A and B Compartments: how major nuclear locales define nuclear genome organization and function

(2025)10.7554/elife.99116.3.sa2

N/A

0DataRank · unranked

0 citations

Melike Lakadamyali

Nuclear softening expedites interstitial cell migration in fibrous networks and dense connective tissues

Science Advances(2020)10.1126/sciadv.aax5083

N/A

0DataRank · unranked

85 citations

Kwang Hoon Song, Shreyasi Thakur, Liane M. Miller, Xuan Cao, Ana P. Peredo +8 more

Melike Lakadamyali

Indexed papers

Top data-sharing exemplar

Papers