Frank DiMaio

Biochemistry, Genetics and Molecular BiologyMaterials ScienceEnvironmental Science

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.6Author DataRank

Indexed papers

3in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge

Nature Methods(2024)10.1038/s41592-024-02321-7

Top 23%

0.871DataRank

Top 23%18 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent B. Chen +76 more

Papers

Driven by 51 papers — median percentile 54. Top paper: “An artificial intelligence accelerated virtual screening platform for drug discovery”.

An artificial intelligence accelerated virtual screening platform for drug discovery

Nature Communications(2024)10.1038/s41467-024-52061-7

N/A

2.6DataRank · unranked

210 citations

Domnița-Valeria Rusnac, Hahnbeom Park, Daniele Canzani, Hai M. Nguyen, Lance Stewart +7 more

Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge

Nature Methods(2024)10.1038/s41592-024-02321-7

Top 23%

0.871DataRank

Top 23%18 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent B. Chen +76 more

IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods

Journal of Molecular Biology(2024)10.1016/j.jmb.2024.168546

Top 46%

0.395DataRank

Top 46%11 citations

Benjamin Webb, John Westbrook, Thomas D. Goddard, Christian A. Hanke, Andrea Graziadei +30 more

Outcomes of the 2019 EMDataResource model challenge: validation of cryo-EM models at near-atomic resolution

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.12.147033

Top 48%

0.375DataRank

Top 48%7 citations

Andriy Kryshtafovych, Paul D. Adams, Pavel V. Afonine, Matthew L. Baker, Benjamin A. Barad +49 more

Toward high-resolution modeling of small molecule–ion channel interactions

Frontiers in Pharmacology(2024)10.3389/fphar.2024.1411428

N/A

0.339DataRank · unranked

8 citations

Phuong T. Nguyen, Guangfeng Zhou, Heike Wulff, Frank DiMaio, Vladimir Yarov‐Yarovoy +1 more

Computational design of mixed chirality peptide macrocycles with internal symmetry

Protein Science(2020)10.1002/pro.3974

N/A

0DataRank · unranked

36 citations

Christine S. Kang, M.R. Sawaya, Stephen Rettie, Xinting Li, I. Antselovich +7 more

The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design

UNC Libraries(2020)10.17615/6sk2-v510

N/A

0DataRank · unranked

0 citations

Matthew J. O’Meara, Philip Bradley, Maxim V. Shapovalov, Rhiju Das, Hahnbeom Park +15 more

Modeling Symmetric Macromolecular Structures in Rosetta3

UNC Libraries(2020)10.17615/t8nf-n096

N/A

0DataRank · unranked

0 citations

Phil Bradley, Andrew Leaver-Fay, Frank DiMaio, Ingemar André, David Baker

Accurate prediction of protein structures and interactions using a three-track neural network

Science(2021)10.1126/science.abj8754

N/A

0DataRank · unranked

5780 citations

Frank DiMaio, Ivan Anishchenko, Justas Dauparas, Sergey Ovchinnikov, Gyu Rie Lee +27 more

De novo protein design by deep network hallucination

Nature(2021)10.1038/s41586-021-04184-w

N/A

0DataRank · unranked

616 citations

Samuel J. Pellock, Tamuka M. Chidyausiku, Theresa A. Ramelot, Sergey Ovchinnikov, Jingzhou Hao +10 more

Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge

Nature Methods(2021)10.1038/s41592-020-01051-w

N/A

0DataRank · unranked

119 citations

Andriy Kryshtafovych, Paul D. Adams, Pavel V. Afonine, Matthew L. Baker, Benjamin A. Barad +49 more

Discovery and Characterization of Spike N‐Terminal Domain‐Binding Aptamers for Rapid SARS‐CoV‐2 Detection

Angewandte Chemie International Edition(2021)10.1002/anie.202107730

N/A

0DataRank · unranked

109 citations

Lucy Yang, Ha V. Dang, Emmeline L. Cheng, Ian I. Cardle, Alexandra C. Walls +8 more

BRCA1/BARD1 site-specific ubiquitylation of nucleosomal H2A is directed by BARD1

Nature Structural & Molecular Biology(2021)10.1038/s41594-020-00556-4

N/A

0DataRank · unranked

92 citations

Anika L. Burrell, Daniel P. Farrell, Jianming Kang, Meiling Wang, Jesse M. Hansen +10 more

Treponema pallidum genome sequencing from six continents reveals variability in vaccine candidate genes and dominance of Nichols clade strains in Madagascar

PLoS neglected tropical diseases(2021)10.1371/journal.pntd.0010063

N/A

0DataRank · unranked

89 citations

Michelle J. Lin, Hong Xie, Lasata Shrestha, Tien V. Nguyen, Meei‐Li Huang +28 more

Structure of the phosphoinositide 3-kinase (PI3K) p110γ-p101 complex reveals molecular mechanism of GPCR activation

Science Advances(2021)10.1126/sciadv.abj4282

N/A

0DataRank · unranked

64 citations

Udit Dalwadi, Kaelin D. Fleming, Carson Adams, Jordan TB Stariha, Els Pardon +8 more

Cryo-EM structures of CTP synthase filaments reveal mechanism of pH-sensitive assembly during budding yeast starvation

eLife(2021)10.7554/elife.73368

N/A

0DataRank · unranked

61 citations

Avital Horowitz, Eric M. Lynch, Daniel P Farrell, Joel Quispe, Frank DiMaio +2 more

Electromechanical coupling mechanism for activation and inactivation of an HCN channel

Nature Communications(2021)10.1038/s41467-021-23062-7

N/A

0DataRank · unranked

32 citations

Teresa K. Aman, Frank DiMaio, William N. Zagotta, Gucan Dai

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

Nature Communications(2021)10.1038/s41467-021-27222-7

N/A

0DataRank · unranked

27 citations

Sergey Lyskov, Steven M. Lewis, Jared Adolf‐Bryfogle, Rebecca F. Alford, Kyle A. Barlow +45 more

Large-scale design and refinement of stable proteins using sequence-only models

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.12.435185

N/A

0DataRank · unranked

10 citations

Scott Novotney, Devin Strickland, Hugh K. Haddox, Nicholas Leiby, Gabriel J. Rocklin +18 more

Seipin forms a flexible cage at lipid droplet formation sites

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.05.455270

N/A

0DataRank · unranked

10 citations

Xuewu Sui, Brayden Folger, Carson Adams, Xiao Chen, Roman Remme +7 more

Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.04.438423

N/A

0DataRank · unranked

4 citations

Sergey Lyskov, Steven M. Lewis, Jared Adolf‐Bryfogle, Rebecca F. Alford, Kyle A. Barlow +43 more

Noncanonical Electromechanical Coupling Mechanism of an HCN Channel

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.06.425635

N/A

0DataRank · unranked

3 citations

Teresa K. Aman, Frank DiMaio, William N. Zagotta, Gucan Dai

Cryo-EM Structures of CTP Synthase Filaments Reveal Mechanism of pH-Sensitive Assembly During Budding Yeast Starvation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.08.25.457724

N/A

0DataRank · unranked

2 citations

Avital Horowitz, Eric M. Lynch, Daniel P. Farrell, Joel Quispe, Frank DiMaio +2 more

Structure of the phosphoinositide 3-kinase p110γ-p101 complex reveals molecular mechanism of GPCR activation

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.01.446612

N/A

0DataRank · unranked

0 citations

Udit Dalwadi, Kaelin D. Fleming, Carson Adams, Jordan TB Stariha, Els Pardon +8 more

Scaffolding protein functional sites using deep learning

Science(2022)10.1126/science.abn2100

N/A

0DataRank · unranked

474 citations

Sidney Lisanza, David Juergens, Doug Tischer, Joseph L. Watson, Karla M. Castro +19 more

Seipin forms a flexible cage at lipid droplet formation sites

Nature Structural & Molecular Biology(2022)10.1038/s41594-021-00718-y

N/A

0DataRank · unranked

106 citations

Xuewu Sui, Brayden Folger, Carson Adams, Xiao Chen, Roman Remme +7 more

Architecture and antigenicity of the Nipah virus attachment glycoprotein

Science(2022)10.1126/science.abm5561

N/A

0DataRank · unranked

97 citations

Moushimi Amaya, Amin Addetia, Ha V. Dang, Gabriella Reggiano, Lianying Yan +5 more

AlphaFold accurately predicts distinct conformations based on the oligomeric state of a de novo designed protein

Protein Science(2022)10.1002/pro.4368

N/A

0DataRank · unranked

14 citations

Timothy M. Jacobs, Frank D. Teets, Frank DiMaio, Ashutosh Tripathy, Brian Kuhlman +1 more

Hallucinating protein assemblies

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.06.09.493773

N/A

0DataRank · unranked

4 citations

Lukas F. Milles, Alexis Courbet, Robert J. Ragotte, Justas Dauparas, Elias S. Kinfu +11 more

AlphaFold accurately predicts distinct conformations based on oligomeric state of a de novo designed protein

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.02.478886

N/A

0DataRank · unranked

1 citations

Timothy M. Jacobs, Frank D. Teets, Frank DiMaio, Ashutosh Tripathy, Brian Kuhlman +1 more

A Structural Model of the Endogenous Human BAF Complex Informs Disease Mechanisms

Cell(2020)10.1016/j.cell.2020.09.051

N/A

0DataRank · unranked

202 citations

Hiroshi Suzuki, Daniel P. Farrell, Akshay Sankar, Jie Luo, Martin Filipovski +12 more

De novo design of highly selective miniprotein inhibitors of integrins αvβ6 and αvβ8

Nature Communications(2023)10.1038/s41467-023-41272-z

N/A

0DataRank · unranked

48 citations

Lei Shi, Ashley Chang, Xianchi Dong, Andres Fernandez, John C. Kraft +35 more

Residue-level error detection in cryoelectron microscopy models

Structure(2023)10.1016/j.str.2023.05.002

N/A

0DataRank · unranked

14 citations

Wolfgang Lugmayr, Daniel P. Farrell, Thomas C. Marlovits, Frank DiMaio, Gabriella Reggiano

Generalized Biomolecular Modeling and Design with RoseTTAFold All-Atom

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.09.561603

N/A

0DataRank · unranked

110 citations

Jue Wang, Woody Ahern, Pascal Sturmfels, Preetham Venkatesh, Indrek Kalvet +14 more

Cyclic peptide structure prediction and design using AlphaFold

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.25.529956

N/A

0DataRank · unranked

81 citations

Katelyn V. Campbell, Asim K. Bera, Alex Kang, Simon Kozlov, Joshmyn De La Cruz +6 more

Computational design of sequence-specific DNA-binding proteins

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.20.558720

N/A

0DataRank · unranked

28 citations

Robert Pecoraro, Ryan McHugh, Lindsey Doyle, Wei Chen, Olivier Boivin +15 more

De novo design of highly selective miniprotein inhibitors of integrins αvβ6 and αvβ8

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.12.544624

N/A

0DataRank · unranked

2 citations

Lei Shi, Ashley Chang, Xianchi Dong, Andres Fernandez, John C. Kraft +35 more

RNA-Puzzles Round V: blind predictions of 23 RNA structures

Nature Methods(2024)10.1038/s41592-024-02543-9

N/A

0DataRank · unranked

65 citations

Yagoub Adam, Ryszard W. Adamiak, Maciej Antczak, Belisa R. H. de Aquino, Nagendar Goud Badepally +94 more

De novo design of pH-responsive self-assembling helical protein filaments

Nature Nanotechnology(2024)10.1038/s41565-024-01641-1

N/A

0DataRank · unranked

62 citations

Eric M. Lynch, Susrut Akkineni, Joseph L. Watson, Justin Decarreau, Neville P. Bethel +9 more

Streptomyces umbrella toxin particles block hyphal growth of competing species

Nature(2024)10.1038/s41586-024-07298-z

N/A

0DataRank · unranked

23 citations

Savannah K Bertolli, Young‐Jun Park, Yongjun Tan, Kevin J. Cutler, Pooja Srinivas +12 more

Outcomes of the EMDataResource Cryo-EM Ligand Modeling Challenge

Research Square(2024)10.21203/rs.3.rs-3864137/v1

N/A

0DataRank · unranked

2 citations

Andriy Kryshtafovych, Grigore Pintilie, S.K. Burley, Jiri Cerny, Vincent Chen +76 more

Towards high-resolution modeling of small molecule-ion channel interactions

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.02.587818

N/A

0DataRank · unranked

0 citations

Phuong T. Nguyen, Guangfeng Zhou, Heike Wulff, Frank DiMaio, Vladimir Yarov‐Yarovoy +1 more

Cyclic peptide structure prediction and design using AlphaFold2

Nature Communications(2025)10.1038/s41467-025-59940-7

N/A

0DataRank · unranked

65 citations

Katelyn V. Campbell, Asim K. Bera, Alex Kang, Simon Kozlov, Yensi Flores Bueso +12 more

Accurate de novo design of high-affinity protein-binding macrocycles using deep learning

Nature Chemical Biology(2025)10.1038/s41589-025-01929-w

N/A

0DataRank · unranked

56 citations

David Juergens, Victor Adebomi, Yensi Flores Bueso, Qinqin Zhao, Alexandria N. Leveille +21 more

Computational design of sequence-specific DNA-binding proteins

Nature Structural & Molecular Biology(2025)10.1038/s41594-025-01669-4

N/A

0DataRank · unranked

23 citations

Robert Pecoraro, Ryan McHugh, Lindsey Doyle, Wei Chen, Olivier Boivin +15 more

De novo design of phosphotyrosine peptide binders

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.29.678898

N/A

0DataRank · unranked

3 citations

Jason Z. Zhang, Kejia Wu, Gyu Rie Lee, Brian Coventry, Isabella M Silvestri +28 more

Robust residue-level error detection in cryo-electron microscopy models

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.12.507680

N/A

0DataRank · unranked

0 citations

Daniel P. Farrell, Frank DiMaio, Gabriella Reggiano

Prediction of Protein Mutational Free Energy: Benchmark and Sampling Improvements Increase Classification Accuracy

Frontiers in Bioengineering and Biotechnology(2020)10.3389/fbioe.2020.558247

N/A

0DataRank · unranked

129 citations

Steven M. Lewis, Indigo King, Frank DiMaio, Hahnbeom Park, Yifan Song +1 more

Polymerization in the actin ATPase clan regulates hexokinase activity in yeast

Science(2020)10.1126/science.aay5359

N/A

0DataRank · unranked

72 citations

Eric M. Lynch, Daniel P. Farrell, Annie Dosey, Frank DiMaio, Tom A. Williams +4 more

Efficient consideration of coordinated water molecules improves computational protein-protein and protein-ligand docking discrimination

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008103

N/A

0DataRank · unranked

69 citations

Hahnbeom Park, Frank DiMaio, Ryan E. Pavlovicz

Allosteric conformational change of a cyclic nucleotide-gated ion channel revealed by DEER spectroscopy

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1916375117

N/A

0DataRank · unranked

58 citations

Jacob L.W. Morgan, Frank DiMaio, William N. Zagotta, Stefan Stoll, Eric G.B. Evans

Frank DiMaio

Indexed papers

Top data-sharing exemplar

Papers