Anna‐Katerina Hadjantonakis

Also affiliated with Council of Science Editors, Kettering University, Education Development Center

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 47 papers. Top paper: “The transcription factor Rreb1 regulates epithelial architecture, invasiveness, and vasculogenesis in early mouse embryos”.

The transcription factor Rreb1 regulates epithelial architecture, invasiveness, and vasculogenesis in early mouse embryos

eLife(2021)10.7554/elife.64811

N/A

0.725DataRank · unranked

13 citations

Jie Su, Jennifer Nichols, Joan Massagué, Anna‐Katerina Hadjantonakis, Sophie M. Morgani

RNA polymerase II and PARP1 shape enhancer-promoter contacts

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.07.07.499190

N/A

0.694DataRank · unranked

9 citations

James J. Lewis, Alexandra G. Chivu, Abderhman Abuhashem, Nils Krietenstein, Edward J. Rice +4 more

ZFP281 controls transcriptional and epigenetic changes promoting mouse pluripotent state transitions via DNMT3 and TET1

Developmental Cell(2024)10.1016/j.devcel.2023.12.018

N/A

0.559DataRank · unranked

16 citations

Sophie Balmer, Cong Lyu, Yunlong Xiang, Vikas Malik, Hailin Wang +7 more

Single-cell analysis of bidirectional reprogramming between early embryonic states identify mechanisms of differential lineage plasticities in mice

Developmental Cell(2024)10.1016/j.devcel.2024.11.022

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0.174DataRank · unranked

2 citations

Yang Yang, Sonja Nowotschin, Manu Setty, Eralda Salataj, Ying-Yi Kuo +8 more

In vitro modeling of early mammalian embryogenesis

Current Opinion in Biomedical Engineering(2020)10.1016/j.cobme.2020.02.003

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0DataRank · unranked

17 citations

Eric D. Siggia, Mijo Simunovic, Anna‐Katerina Hadjantonakis

Highly multiplexed spatially resolved gene expression profiling of mouse organogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.20.391896

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0DataRank · unranked

29 citations

Shila Ghazanfar, Alsu Missarova, Noushin Koulena, Nico Pierson, Jonathan A. Griffiths +15 more

Publisher Correction: TGF-β orchestrates fibrogenic and developmental EMTs via the RAS effector RREB1

Nature(2020)10.1038/s41586-020-1956-y

N/A

0DataRank · unranked

16 citations

Sophie M. Morgani, Charles J. David, Qiong Wang, Ekrem Emrah Er, Yun-Han Huang +8 more

Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis

Nature Biotechnology(2021)10.1038/s41587-021-01006-2

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0DataRank · unranked

353 citations

Shila Ghazanfar, Alsu Missarova, Noushin Koulena, Nico Pierson, Jonathan A. Griffiths +15 more

Quantitative analysis of signaling responses during mouse primordial germ cell specification

Biology Open(2021)10.1242/bio.058741

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0DataRank · unranked

13 citations

Anna‐Katerina Hadjantonakis, Sophie M. Morgani

XRCC3 loss leads to midgestational embryonic lethality in mice

DNA repair(2021)10.1016/j.dnarep.2021.103227

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0DataRank · unranked

10 citations

Laina Freyer, Néstor Saiz, Svetlana Gavrilov, Raymond Q Wang, Peter Romanienko +4 more

Rapid and efficient adaptation of the dTAG system in mammalian development reveals stage specific requirements of NELF

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.30.470581

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0DataRank · unranked

4 citations

Anna‐Katerina Hadjantonakis, Abderhman Abuhashem

Quantitative analysis of signaling responses during mouse primordial germ cell specification

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.11.426293

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0DataRank · unranked

2 citations

Anna‐Katerina Hadjantonakis, Sophie M. Morgani

Rapid and efficient degradation of endogenous proteins in vivo identifies stage-specific roles of RNA Pol II pausing in mammalian development

Developmental Cell(2022)10.1016/j.devcel.2022.03.013

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0DataRank · unranked

53 citations

Andrew S. Lee, Alexandra L. Joyner, Anna‐Katerina Hadjantonakis, Abderhman Abuhashem

Journey of the mouse primitive endoderm: from specification to maturation

Philosophical Transactions of the Royal Society B Biological Sciences(2022)10.1098/rstb.2021.0252

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0DataRank · unranked

21 citations

Anna‐Katerina Hadjantonakis, Sayali Chowdhary

Generation of knock-in degron tags for endogenous proteins in mice using the dTAG system

STAR Protocols(2022)10.1016/j.xpro.2022.101660

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0DataRank · unranked

9 citations

Anna‐Katerina Hadjantonakis, Abderhman Abuhashem

RNA Pol II pausing facilitates phased pluripotency transitions by buffering transcription

Genes & Development(2022)10.1101/gad.349565.122

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0DataRank · unranked

25 citations

Alexandra G. Chivu, Yixin Zhao, Edward J. Rice, Adam Siepel, Charles G. Danko +2 more

RNA Pol II pausing facilitates phased pluripotency transitions by buffering transcription

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.21.489065

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0DataRank · unranked

5 citations

Alexandra G. Chivu, Yixin Zhao, Edward J. Rice, Adam Siepel, Charles G. Danko +2 more

A ratchet-like apical constriction drives cell ingression during the mouse gastrulation EMT

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.30.489707

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0DataRank · unranked

3 citations

Kathryn V. Anderson, Anna‐Katerina Hadjantonakis, Alexandre Francou

Amino acid intake strategies define pluripotent cell states

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.11.16.516803

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0DataRank · unranked

1 citations

Benjamin T. Jackson, Vidur Garg, Katrina I. Paras, Yanyang Chen, Sanjeethan C. Baksh +4 more

RNA polymerase II and PARP1 shape enhancer-promoter contacts

Research Square(2022)10.21203/rs.3.rs-1851612/v1

N/A

0DataRank · unranked

0 citations

Gilad Barshad, James J. Lewis, Alexandra G. Chivu, Abderhman Abuhashem, Nils Krietenstein +4 more

RNA polymerase II dynamics shape enhancer–promoter interactions

Nature Genetics(2023)10.1038/s41588-023-01442-7

N/A

0DataRank · unranked

115 citations

James J. Lewis, Alexandra G. Chivu, Abderhman Abuhashem, Nils Krietenstein, Edward J. Rice +6 more

3D Enhancer–promoter networks provide predictive features for gene expression and coregulation in early embryonic lineages

Nature Structural & Molecular Biology(2023)10.1038/s41594-023-01130-4

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0DataRank · unranked

49 citations

Eralda Salataj, Dafne Campigli Di Giammartino, Javier Rodriguez-Hernaez, Andreas Kloetgen, Vidur Garg +10 more

A ratchet-like apical constriction drives cell ingression during the mouse gastrulation EMT

eLife(2023)10.7554/elife.84019

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0DataRank · unranked

33 citations

Kathryn V. Anderson, Anna‐Katerina Hadjantonakis, Alexandre Francou

Evolution of promoter-proximal pausing enabled a new layer of transcription control

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.19.529146

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0DataRank · unranked

10 citations

Brent A. Basso, Abderhman Abuhashem, Michelle M. Leger, Gilad Barshad, Edward J. Rice +15 more

Single-cell analysis of bidirectional reprogramming between early embryonic states reveals mechanisms of differential lineage plasticities

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.28.534648

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0DataRank · unranked

7 citations

Yang Yang, Sonja Nowotschin, Manu Setty, Ying-Yi Kuo, Roshan Sharma +8 more

Evolution of promoter-proximal pausing enabled a new layer of transcription control

Research Square(2023)10.21203/rs.3.rs-2679520/v1

N/A

0DataRank · unranked

5 citations

Alexandra G. Chivu, Abderhman Abuhashem, Gilad Barshad, Edward Rice, Michelle M. Leger +12 more

Distinct tumor architectures for metastatic colonization of the brain

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.27.525190

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0DataRank · unranked

4 citations

Danilo G. Macalinao, Sayyed Hamed Shahoei, Lin Tian, Xin Jin, Harihar Basnet +11 more

Tgfbr1 regulates lateral plate mesoderm and endoderm reorganization during the trunk to tail transition

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.22.554351

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0DataRank · unranked

2 citations

Ana Casaca, Ana Nóvoa, Ying-Yi Kuo, Arnon Dias Jurberg, Gabriel G. Martins +3 more

Systematic mapping and modeling of 3D enhancer-promoter interactions in early mouse embryonic lineages reveal regulatory principles that determine the levels and cell-type specificity of gene expression

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.19.549714

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0DataRank · unranked

1 citations

Eralda Salataj, Dafne Campigli Di Giammartino, Javier Rodriguez-Hernaez, Andreas Kloetgen, Vidur Garg +10 more

ZFP281 coordinates DNMT3 and TET1 for transcriptional and epigenetic control in pluripotent state transitions

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.03.24.534143

N/A

0DataRank · unranked

0 citations

Sophie Balmer, Cong Lyu, Yunlong Xiang, Vikas Malik, Hailin Wang +6 more

Distinct tumor architectures and microenvironments for the initiation of breast cancer metastasis in the brain

Cancer Cell(2024)10.1016/j.ccell.2024.08.015

N/A

0DataRank · unranked

67 citations

Danilo G. Macalinao, Sayyed Hamed Shahoei, Lin Tian, Xin Jin, Harihar Basnet +16 more

Amino acid intake strategies define pluripotent cell states

Nature Metabolism(2024)10.1038/s42255-023-00940-6

N/A

0DataRank · unranked

18 citations

Benjamin T. Jackson, Vidur Garg, Katrina I. Paras, Julia S. Brunner, Anna E Bridgeman +6 more

Transcriptional remodeling by OTX2 directs specification and patterning of mammalian definitive endoderm

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.05.30.596630

N/A

0DataRank · unranked

3 citations

Dani Medina-Cano, Christopher M. Uyehara, Clayton Schwarz, Emily Goetzler, Eralda Salataj +8 more

Tgfbr1 regulates lateral plate mesoderm and endoderm reorganization during the trunk to tail transition

eLife(2024)10.7554/elife.94290

N/A

0DataRank · unranked

1 citations

Ana Casaca, Ana Nóvoa, Ying-Yi Kuo, Arnon Dias Jurberg, Gabriel G. Martins +3 more

Tgfbr1 regulates lateral plate mesoderm and endoderm reorganization during the trunk to tail transition

eLife(2024)10.7554/elife.94290.1

N/A

0DataRank · unranked

0 citations

Ana Nóvoa, Ying-Yi Kuo, Arnon Dias Jurberg, Gabriel G. Martins, Anna‐Katerina Hadjantonakis +2 more

Transcription factors SP5 and SP8 drive primary cilia formation in mammalian embryos

Science(2025)10.1126/science.adt5663

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0DataRank · unranked

7 citations

Richard P. Koche, Ravindra B. Chalamalasetty, Daniel N. Stephen, Mark W. Kennedy, Zhimin Lao +10 more

ETV4 and ETV5 orchestrate FGF-mediated lineage specification and epiblast maturation during early mouse development

Development(2025)10.1242/dev.204278

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0DataRank · unranked

6 citations

Woonyung Hur, Vidur Garg, Ying-Yi Kuo, Kathy K. Niakan, Anna‐Katerina Hadjantonakis +1 more

Tgfbr1 regulates lateral plate mesoderm and endoderm reorganization during the trunk to tail transition

eLife(2025)10.7554/elife.94290.3

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0DataRank · unranked

2 citations

Ana Casaca, Ana Nóvoa, Ying-Yi Kuo, Arnon Dias Jurberg, Gabriel G. Martins +3 more

WNK1 mediates M-CSF-induced macropinocytosis to enforce macrophage lineage fidelity

Nature Communications(2025)10.1038/s41467-025-59901-0

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0DataRank · unranked

2 citations

Zong-Lin Liu, Mohamed I. Gatie, Adam Krebs, Waleska Saitz Rojas, Anya J. O’Neal +19 more

Donor embryonic stem cells displace host cells of 8-cell-stage chimeras to the extra-embryonic lineages by spatial crowding and FGF4 signalling

Development(2025)10.1242/dev.204518

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0DataRank · unranked

4 citations

Anna Katharina Schrattel, Peter Humphreys, Kenneth A. Jones, Jérôme Artus, Anna‐Katerina Hadjantonakis +3 more

L1CAM signaling through planar cell polarity generates SOX2 + metastatic progenitors in lung adenocarcinoma

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.22.671773

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0DataRank · unranked

1 citations

Yasemin Kaygusuz, Carson Kenum, Lan He, Mohamed I. Gatie, Xueqian Zhuang +9 more

In preprints: unfolding the spatial genomics frontier of mouse gastrulation

Development(2025)10.1242/dev.204822

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0DataRank · unranked

0 citations

Anna‐Katerina Hadjantonakis, Sonja Nowotschin

Mouse gastrulation: Coordination of tissue patterning, specification and diversification of cell fate

Mechanisms of Development(2020)10.1016/j.mod.2020.103617

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0DataRank · unranked

163 citations

Anna‐Katerina Hadjantonakis, Evan Bardot

Transcription factors SP5 and SP8 drive primary cilia formation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.03.657415

N/A

0DataRank · unranked

0 citations

Richard P. Koche, Ravindra B. Chalamalasetty, Daniel N. Stephen, Mark W. Kennedy, Zhimin Lao +10 more

Live Visualization of ERK Activity in the Mouse Blastocyst Reveals Lineage-Specific Signaling Dynamics

Developmental Cell(2020)10.1016/j.devcel.2020.09.030

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0DataRank · unranked

97 citations

Shahadat Rahman, Dhruv Raina, Christian Schröter, Anna‐Katerina Hadjantonakis, Claire Simon

Single-Cell Transcriptomics Reveals Early Emergence of Liver Parenchymal and Non-parenchymal Cell Lineages

Cell(2020)10.1016/j.cell.2020.09.012

N/A

0DataRank · unranked

95 citations

Sibyl Drissler, Rebecca Cullum, Wei Wei, Manu Setty, Erin M. Bell +9 more

Coordination between patterning and morphogenesis ensures robustness during mouse development

Philosophical Transactions of the Royal Society B Biological Sciences(2020)10.1098/rstb.2019.0562

N/A

0DataRank · unranked

15 citations

Anna‐Katerina Hadjantonakis, Néstor Saiz