🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Adam Klie

University of California San Diego

ORCID: 0000-0002-7600-3086
Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile
1.3Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Increasing metadata coverage of SRA BioSample entries using deep learning–based named entity recognition

Database(2021)10.1093/database/baab021
Top 16%
1.3DataRank
Top 16%21 citations

Brian Tsui, Shamim Mollah, Dylan Skola, Michelle T. Dow, Chun-Nan Hsu +2 more

Papers

Driven by 13 papers — median percentile 84. Top paper: “Increasing metadata coverage of SRA BioSample entries using deep learning–based named entity recognition”.

Increasing metadata coverage of SRA BioSample entries using deep learning–based named entity recognition

Database(2021)10.1093/database/baab021
Top 16%
1.3DataRank
Top 16%21 citations

Brian Tsui, Shamim Mollah, Dylan Skola, Michelle T. Dow, Chun-Nan Hsu +2 more

Pre-operative stereotactic radiosurgery and peri-operative dexamethasone for resectable brain metastases: a two-arm pilot study evaluating clinical outcomes and immunological correlates

Nature Communications(2024)10.1038/s41467-024-53034-6
N/A
0.493DataRank · unranked
15 citations

Meghana S. Pagadala, Maria A. Cardenas, Roshan S. Prabhu, Subir Goyal, Chengjing Zhou +34 more

Affinity-optimizing variants within cardiac enhancers disrupt heart development and contribute to cardiac traits

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.27.493636
N/A
0DataRank · unranked
2 citations

Alexis Bantle, Joe J. Solvason, Jessica L. Grudzien, Agnieszka D’Antonio‐Chronowska, Fabian Lim +6 more

EUGENe: A Python toolkit for predictive analyses of regulatory sequences

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.24.513593
N/A
0DataRank · unranked
2 citations

Hayden Stites, Tobias Jores, Joe J. Solvason, Emma K. Farley, Hannah Carter +1 more

Single-nucleotide variants within heart enhancers increase binding affinity and disrupt heart development

Developmental Cell(2023)10.1016/j.devcel.2023.09.005
N/A
0DataRank · unranked
44 citations

Alexis Bantle, Joe J. Solvason, Jessica L. Grudzien, Agnieszka D’Antonio‐Chronowska, Fabian Lim +8 more

Predictive analyses of regulatory sequences with EUGENe

Nature Computational Science(2023)10.1038/s43588-023-00544-w
N/A
0DataRank · unranked
22 citations

David Laub, James V. Talwar, Hayden Stites, Tobias Jores, Joe J. Solvason +3 more

Epigenetic germline variants predict cancer prognosis and risk and distribute uniquely in topologically associating domains

F1000Research(2023)10.12688/f1000research.139476.1
N/A
0DataRank · unranked
0 citations

Meghana S. Pagadala, Adam Klie, James V. Talwar, Hannah Carter, Shervin Goudarzi

In vitro evolution and whole genome analysis to study chemotherapy drug resistance in haploid human cells

Scientific Reports(2024)10.1038/s41598-024-63943-7
N/A
0DataRank · unranked
4 citations

Michelle T. Dow, Krypton Carolino, Adam Klie, Gregory J. Fonseca, Trey Ideker +3 more

GRIEVOUS: your command-line general for resolving cross-dataset genotype inconsistencies

Bioinformatics(2024)10.1093/bioinformatics/btae489
N/A
0DataRank · unranked
0 citations

Adam Klie, Meghana S. Pagadala, Hannah Carter, James V. Talwar

GenVarLoader: An accelerated dataloader for applying deep learning to personalized genomics

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.01.15.633240
N/A
0DataRank · unranked
2 citations

A. Ho, Jeff Jaureguy, Adam Klie, Rany M. Salem, Graham McVicker +2 more

Text Processing for Detection of Fungal Ocular Involvement in Critical Care Patients: Cross-Sectional Study

Journal of Medical Internet Research(2020)10.2196/18855
N/A
0DataRank · unranked
10 citations

Adam Klie, Bharanidharan Radha Saseendrakumar, Gordon Y. Ye, Michael Hogarth, Sally L. Baxter

Epigenetic germline variants predict cancer prognosis and risk and distribute uniquely in topologically associating domains

F1000Research(2025)10.12688/f1000research.139476.2
N/A
0DataRank · unranked
0 citations

Meghana S. Pagadala, Adam Klie, James V. Talwar, Hannah Carter, Shervin Goudarzi

In vitro evolution and whole genome analysis to study chemotherapy drug resistance in haploid human cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.17.982181
N/A
0DataRank · unranked
0 citations

Michelle T. Dow, Krypton Carolino, Adam Klie, Gregory J. Fonseca, Trey Ideker +3 more