Timothy E. Reddy

Also affiliated with Altius Institute for Biomedical Sciences, Duke Medical Center, Center for Genomic Science, Duke University Hospital, Genetic Technologies (Australia)

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

8.3Author DataRank

Indexed papers

5in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 5 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

Papers

Driven by 39 papers — median percentile 55. Top paper: “Expanded encyclopaedias of DNA elements in the human and mouse genomes”.

Expanded encyclopaedias of DNA elements in the human and mouse genomes

Nature(2020)10.1038/s41586-020-2493-4

Top 3%

6.4DataRank

Top 3%2615 citations

Federico Abascal, Reyes Acosta, Nicholas J. Addleman, Jessika Adrian, Veena Afzal +501 more

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

Genome Research(2012)10.1101/gr.136184.111

N/A

1.2DataRank · unranked

2212 citations

Georgi K. Marinov, Anshul Kundaje, Yanxiao Zhang, Florencia Pauli, Serafim Batzoglou +46 more

Deciphering the impact of genomic variation on function

Nature(2024)10.1038/s41586-024-07510-0

N/A

1.1DataRank · unranked

89 citations

Jesse M. Engreitz, Heather A. Lawson, Harinder Singh, Lea M. Starita, Gary C. Hon +95 more

Architecture of the human regulatory network derived from ENCODE data

Nature(2012)10.1038/nature11245

N/A

1.1DataRank · unranked

1548 citations

Anshul Kundaje, Manoj Hariharan, Stephen G. Landt, Koon-Kiu Yan, Chao Cheng +58 more

Multicenter integrated analysis of noncoding CRISPRi screens

Nature Methods(2024)10.1038/s41592-024-02216-7

Top 20%

1.0DataRank

Top 20%54 citations

Josh Tycko, Jin Woo Oh, Lexi R. Bounds, Sager J. Gosai, Lazaros Lataniotis +29 more

The PsychENCODE project

Nature Neuroscience(2015)10.1038/nn.4156

N/A

0.927DataRank · unranked

483 citations

Chunyu Liu, James A. Knowles, Flora M. Vaccarino, Philip L. De Jager, Gregory E. Crawford +87 more

An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional Regulation

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.12.26.629296

Top 45%

0.416DataRank

Top 45%12 citations

Henry Pratt, Kaili Fan, Nishigandha Phalke, Jonathan Fisher, Shaimae I. Elhajjajy +37 more

Comprehensive evaluation of diverse massively parallel reporter assays to functionally characterize human enhancers genome-wide

Genome biology(2025)10.1186/s13059-025-03828-8

Top 59%

0.257DataRank

Top 59%4 citations

Alden King-Yung Leung, Yutong Zhu, Li Yao, Avery Willis, Xiuqi Pan +10 more

The IGVF catalog—from genetic variation to function

Nucleic Acids Research(2025)10.1093/nar/gkaf1341

Top 63%

0.219DataRank

Top 63%3 citations

Shane Liu, Pedro Assis, Mingjie Li, Shengcheng Dong, Ian Whaling +42 more

AP-1 subunits converge promiscuously at enhancers to potentiate transcription

Genome Research(2021)10.1101/gr.267898.120

N/A

0DataRank · unranked

45 citations

D. Dewran Koçak, Luke C. Bartelt, Courtney Williams, Alejandro Barrera, Charles A. Gersbach +2 more

Correcting signal biases and detecting regulatory elements in STARR-seq data

Genome Research(2021)10.1101/gr.269209.120

N/A

0DataRank · unranked

22 citations

Graham D. Johnson, Jungkyun Seo, Alejandro Barrera, Thomas Cowart, William H. Majoros +4 more

Genome-wide annotation of gene regulatory elements linked to cell fitness

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.08.434470

N/A

0DataRank · unranked

14 citations

Tyler S. Klann, Alejandro Barrera, Adarsh R. Ettyreddy, Siyan Liu, Ryan Rickels +10 more

Cooperative regulation of coupled oncoprotein translation and stability in triple-negative breast cancer by EGFR and CDK12

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.03.433762

N/A

0DataRank · unranked

3 citations

Natalia Sutiman, Xinyue Deng, Luke C. Bartelt, Qiang Chen, Alejandro Barrera +7 more

Transgenic mice for in vivo epigenome editing with CRISPR-based systems

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.08.434430

N/A

0DataRank · unranked

3 citations

Keith Siklenka, Erica Rodriguez, Katherine R. Tonn Eisinger, Alejandro Barrera, Fang Liu +18 more

Profiling the quantitative occupancy of myriad transcription factors across conditions by modeling chromatin accessibility data

Genome Research(2022)10.1101/gr.272203.120

N/A

0DataRank · unranked

3 citations

Jianling Zhong, Alexias Safi, Linda K. Hong, Alok K. Tewari, Lingyun Song +5 more

Mediator Kinase Inhibition Impedes Transcriptional Plasticity and Prevents Resistance to ERK/MAPK-Targeted Therapy in KRAS -Mutant Cancers

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.17.508384

N/A

0DataRank · unranked

1 citations

Colin A. Martz, Andrew M. Waters, Alejandro Barrera, Justine C. Rutter, Christian Cerda-Smith +14 more

Glucocorticoid Receptor Regulated KCNA5 Mediates Cell Proliferation in Human Fetal Membranes

Research Square(2022)10.21203/rs.3.rs-1594481/v1

N/A

0DataRank · unranked

0 citations

Alejandro Barrera, Laavanya Sankaranarayanan, Terrence K. Allen, Timothy E. Reddy, Sarah J. Cunningham

Glucocorticoid Receptor Regulated KCNA5 Mediates Cell Proliferation in Human Fetal Membranes

Research Square(2022)10.21203/rs.3.rs-1594481/v2

N/A

0DataRank · unranked

0 citations

Alejandro Barrera, Laavanya Sankaranarayanan, Terrence K. Allen, Timothy E. Reddy, Sarah J. Cunningham

Transcriptional and epigenetic regulators of human CD8+ T cell function identified through orthogonal CRISPR screens

Nature Genetics(2023)10.1038/s41588-023-01554-0

N/A

0DataRank · unranked

81 citations

Adam M. Swartz, Michael C. Brown, Alejandro Barrera, Christian McRoberts Amador, Keith Siklenka +9 more

Integrin α3 promotes T H 17 cell polarization and extravasation during autoimmune neuroinflammation

Science Immunology(2023)10.1126/sciimmunol.adg7597

N/A

0DataRank · unranked

22 citations

William E. Barclay, Alejandro Barrera, Tzu-Chieh Liao, Harmony R. Salzler, Timothy E. Reddy +3 more

Cooperative regulation of coupled oncoprotein synthesis and stability in triple-negative breast cancer by EGFR and CDK12/13

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2221448120

N/A

0DataRank · unranked

16 citations

Natalia Sutiman, Xinyue Deng, Annie Liu, Christian Cerda-Smith, Haley M. Hutchinson +11 more

Orthogonal CRISPR screens to identify transcriptional and epigenetic regulators of human CD8 T cell function

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.01.538906

N/A

0DataRank · unranked

8 citations

Adam M. Swartz, Michael C. Brown, Alejandro Barrera, Christian McRoberts Amador, Keith Siklenka +7 more

Mediator kinase inhibition impedes transcriptional plasticity and prevents resistance to ERK/MAPK-targeted therapy in KRAS-mutant cancers

npj Precision Oncology(2024)10.1038/s41698-024-00615-9

N/A

0DataRank · unranked

6 citations

Colin A. Martz, Andrew M. Waters, Alejandro Barrera, Annie Liu, Justine C. Rutter +15 more

Promoter Deletion Leading to Allele Specific Expression in a Genetically Unsolved Case of Primary Ciliary Dyskinesia

American Journal of Medical Genetics Part A(2024)10.1002/ajmg.a.63880

N/A

0DataRank · unranked

1 citations

Weining Yin, Amanda Smith, Patrick R. Sears, Margaret W. Leigh, Thomas W. Ferkol +20 more

Epigenome editing of the CFTR-locus for treatment of cystic fibrosis

UNC Libraries(2024)10.17615/03pd-yq57

N/A

0DataRank · unranked

0 citations

Timothy E. Reddy, Ami M. Kabadi, Lauren Drowley, Navneet Dalal, I.F.W. McDowell +4 more

Gene regulatory activity associated with polycystic ovary syndrome revealed DENND1A-dependent testosterone production

Nature Communications(2025)10.1038/s41467-025-62884-7

N/A

0DataRank · unranked

8 citations

Kelly Brewer, Shauna Morrow, Graham D. Johnson, Alejandro Barrera, Revathy Venukuttan +4 more

Bayesian estimation of allele-specific expression in the presence of phasing uncertainty

Bioinformatics(2025)10.1093/bioinformatics/btaf283

N/A

0DataRank · unranked

2 citations

Zachary W. Gomez, Timothy E. Reddy, Andrew S. Allen, William H. Majoros, Xue Zou

SMARCA2 is an essential and potent cofactor for a specific subset of the glucocorticoid response in A549 cells

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.13.688306

N/A

0DataRank · unranked

1 citations

D. Dewran Koçak, Keith Siklenka, Graham D. Johnson, Courtney Williams, Luke C. Bartelt +6 more

Cell Modeling and Rescue of a Novel Non-coding Genetic Cause of Glycogen Storage Disease IX

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.14.654043

N/A

0DataRank · unranked

0 citations

Xue Zou, Jian Dai, R. A. Francis, Alexias Safi, Karynne Patterson +13 more

Promoter Deletion Leading to Allele Specific Expression in a Genetically Unsolved Case of Primary Ciliary Dyskinesia

UNC Libraries(2025)10.17615/eftt-rm75

N/A

0DataRank · unranked

0 citations

Maimoona A. Zariwala, Kenneth N. Olivier, Amanda Smith, Hong Dang, Weining Yin +20 more

Cell modeling and rescue of a novel noncoding genetic cause of glycogen storage disease IX

Genetics in Medicine Open(2025)10.1016/j.gimo.2025.103474

N/A

0DataRank · unranked

0 citations

Xue Zou, Jian Dai, R. A. Francis, Alexias Safi, Karynne Patterson +14 more

Functional Annotation of the Major Histocompatibility Complex Locus

bioRxiv (Cold Spring Harbor Laboratory)(2026)10.64898/2026.02.01.703124

N/A

0DataRank · unranked

0 citations

Alejandro Barrera, Maria ter Weele, Siyan Liu, Euphy Wu, Shengyu Li +22 more

Master Regulators and Cofactors of Human Neuronal Cell Fate Specification Identified by CRISPR Gene Activation Screens

Cell Reports(2020)10.1016/j.celrep.2020.108460

N/A

0DataRank · unranked

75 citations

Sean R. McCutcheon, Shataakshi Dube, Alejandro Barrera, Tyler S. Klann, Grayson Rice +5 more

Functional Genomics of Healthy and Pathological Fetal Membranes

Frontiers in Physiology(2020)10.3389/fphys.2020.00687

N/A

0DataRank · unranked

5 citations

Liping Feng, Terrence K. Allen, Timothy E. Reddy, Sarah J. Cunningham

Quantitative occupancy of myriad transcription factors from one DNase experiment enables efficient comparisons across conditions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.28.171587

N/A

0DataRank · unranked

2 citations

Jianling Zhong, Alexias Safi, Linda K. Hong, Alok K. Tewari, Lingyun Song +5 more

Targeted long-read sequencing identifies missing disease-causing variation

The American Journal of Human Genetics(2021)10.1016/j.ajhg.2021.06.006

N/A

0DataRank · unranked

242 citations

Arvis Sulovari, Tianyun Wang, Hailey Loucks, Kendra Hoekzema, Katherine M. Munson +45 more

Transgenic mice for in vivo epigenome editing with CRISPR-based systems

Nature Methods(2021)10.1038/s41592-021-01207-2

N/A

0DataRank · unranked

139 citations

Keith Siklenka, Erica Rodriguez, Katherine R. Tonn Eisinger, Alejandro Barrera, Fang Liu +18 more

Causal network inference from gene transcriptional time-series response to glucocorticoids

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008223

N/A

0DataRank · unranked

38 citations

Bianca Dumitrascu, Ian C. McDowell, Brian Jo, Alejandro Barrera, Linda K. Hong +4 more

Epigenome editing of the CFTR-locus for treatment of cystic fibrosis

Journal of Cystic Fibrosis(2021)10.1016/j.jcf.2021.04.008

N/A

0DataRank · unranked

14 citations

Leah Machlin, Nikita Dalal, Rhianna E. Lee, Ian C. McDowell, Nirav N. Shah +4 more

Timothy E. Reddy

Indexed papers

Top data-sharing exemplar

Papers