Vaibhav Upadhyay

Also affiliated with University of San Francisco

Biochemistry, Genetics and Molecular BiologyMedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 20 papers. Top paper: “A diet-dependent host metabolite shapes the gut microbiota to protect from autoimmunity”.

A diet-dependent host metabolite shapes the gut microbiota to protect from autoimmunity

Cell Reports(2024)10.1016/j.celrep.2024.114891

N/A

0.926DataRank · unranked

29 citations

Vaibhav Upadhyay, Rachel Rock, Lorenzo Ramirez, Kai Trepka, Patrycja Puchalska +12 more

Reporting guidelines for human microbiome research: the STORMS checklist

Nature Medicine(2021)10.1038/s41591-021-01552-x

N/A

0.918DataRank · unranked

454 citations

Audrey Renson, Genomic Standards Consortium, Cesare Furlanello, Shaimaa Elsafoury, Ludwig Geistlinger +98 more

Differences in the Gut Microbiomes of Distinct Ethnicities Within the Same Geographic Area Are Linked to Host Metabolic Health

Research Square (Research Square)(2020)10.21203/rs.3.rs-100084/v1

N/A

0DataRank · unranked

1 citations

Diana Alba, Vaibhav Upadhyay, Jordan E. Bisanz, Jingwei Cai, Ho Lim Lee +6 more

Differences in the gut microbiomes of distinct ethnicities within the same geographic area are linked to host metabolic health

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.10.23.352807

N/A

0DataRank · unranked

1 citations

Diana Alba, Vaibhav Upadhyay, Jordan E. Bisanz, Jingwei Cai, Ho Lim Lee +7 more

Human gut bacterial metabolism drives Th17 activation and colitis

Cell Host & Microbe(2021)10.1016/j.chom.2021.11.001

N/A

0DataRank · unranked

264 citations

Qi Yan Ang, Renuka R. Nayak, Annamarie E. Bustion, Moriah Sandy, Bing Zhang +5 more

The East Asian gut microbiome is distinct from colocalized White subjects and connected to metabolic health

eLife(2021)10.7554/elife.70349

N/A

0DataRank · unranked

61 citations

Diana Alba, Vaibhav Upadhyay, Jordan E. Bisanz, Jingwei Cai, Ho Lim Lee +7 more

Differences in the gut microbiomes of distinct ethnicities within the same geographic area are linked to host metabolic health

Research Square(2021)10.21203/rs.3.rs-100084/v2

N/A

0DataRank · unranked

0 citations

Diana Alba, Vaibhav Upadhyay, Jordan E. Bisanz, Jingwei Cai, Ho Lim Lee +7 more

Mass cytometry reveals a conserved immune trajectory of recovery in hospitalized COVID-19 patients

Immunity(2022)10.1016/j.immuni.2022.06.004

N/A

0DataRank · unranked

27 citations

Trine Line Hauge Okholm, Iliana Tenvooren, Diana M. Marquez, Stanley Tamaki, Priscila Muñoz Sandoval +54 more

Mild SARS-CoV-2 infection results in long-lasting microbiota instability

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.07.519508

N/A

0DataRank · unranked

11 citations

Rahul Suryawanshi, Preston Tasoff, Maria McCavitt-Malvido, G. Renuka Kumar, Victoria Murray +11 more

Mild SARS-CoV-2 infection results in long-lasting microbiota instability

mBio(2023)10.1128/mbio.00889-23

N/A

0DataRank · unranked

37 citations

Rahul K. Suryawanshi, Preston Tasoff, Maria McCavitt-Malvido, Renuka Kumar, Victoria Murray +11 more

Variety of Fruit and Vegetables and Alcohol Intake are Associated with Gut Microbial Species and Gene Abundance in Colorectal Cancer Survivors

American Journal of Clinical Nutrition(2023)10.1016/j.ajcnut.2023.07.011

N/A

0DataRank · unranked

15 citations

Vaibhav Upadhyay, Irina Tolstykh, Katherine Van Loon, Angela Laffan, Dalila Stanfield +11 more

A diet-dependent host metabolite shapes the gut microbiota to protect from autoimmunity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.02.565382

N/A

0DataRank · unranked

8 citations

Vaibhav Upadhyay, Rachel Rock, Lorenzo Ramirez, Kai Trepka, Patrycja Puchalska +12 more

PhIP-Seq uncovers novel autoantibodies and unique endotypes in interstitial lung disease

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.24.538091

N/A

0DataRank · unranked

3 citations

Young me Yoon, Sara E. Vazquez, Tania E. Velez, Kirk D. Jones, Cathryn T. Lee +12 more

Pharma[e]cology: How the Gut Microbiome Contributes to Variations in Drug Response

The Annual Review of Pharmacology and Toxicology(2024)10.1146/annurev-pharmtox-022724-100847

N/A

0DataRank · unranked

19 citations

C. Anders Olson, Vaibhav Upadhyay, Chen Zhang, Peter J. Turnbaugh, Kai Trepka

Cell-Type Specificity of Mosaic Chromosome 1q Gain Resolved by snRNA-seq in a Case of Epilepsy With Hyaline Protoplasmic Astrocytopathy

Neurology Genetics(2024)10.1212/nxg.0000000000200142

N/A

0DataRank · unranked

2 citations

Cathryn R. Cadwell, W. Patrick Devine, Tarık Tihan, Zhongxia Qi, Nilika S. Singhal +9 more

Phage Immunoprecipitation‐Sequencing Reveals CDHR5 Autoantibodies in Select Patients With Interstitial Lung Disease

ACR Open Rheumatology(2024)10.1002/acr2.11696

N/A

0DataRank · unranked

4 citations

Young me Yoon, Sara E. Vazquez, Tania Estefania Velez, Kirk D. Jones, Cathryn T. Lee +12 more

Expansion of a bacterial operon during cancer treatment ameliorates fluoropyrimidine toxicity

Science Translational Medicine(2025)10.1126/scitranslmed.adq8870

N/A

0DataRank · unranked

13 citations

Wesley A. Kidder, Than S. Kyaw, Taylor M. Halsey, C. Anders Olson, Edwin F. Ortega +14 more

Active Antigen-Specific Adaptive Immune Responses Are Shared among Patients with Progressive Fibrotic Interstitial Lung Disease

American Journal of Respiratory and Critical Care Medicine(2025)10.1164/rccm.202502-0419oc

N/A

0DataRank · unranked

2 citations

Young me Yoon, Vaibhav Upadhyay, Sara E. Vazquez, Cathryn T. Lee, Kavitha Selvan +20 more

Shifts in the human gut microbiome during cancer chemotherapy are diet-dependent

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.64898/2025.12.23.696294

N/A

0DataRank · unranked

0 citations

Erin L. Van Blarigan, Than S Kyaw, C. Anders Olson, Gina Partipilo, Edwin F. Ortega +11 more

Investigating Ketone Bodies as Immunometabolic Countermeasures against Respiratory Viral Infections

Med(2020)10.1016/j.medj.2020.06.008

N/A

0DataRank · unranked

74 citations

Andrew P. Koutnik, Emily L. Goldberg, Vaibhav Upadhyay, Peter J. Turnbaugh, Eric Verdin +2 more