🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Nicole J. De Nisco

The University of Texas at Dallas

ORCID: 0000-0002-7670-5301

Also affiliated with The University of Texas Southwestern Medical Center, University of North Texas at Dallas

MedicineBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 5%percentile
0.428Author DataRank

Indexed papers

3in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 3 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies

Journal of Visualized Experiments(2021)10.3791/62872
Top 43%
0.428DataRank
Top 43%9 citations

Neha V. Hulyalkar, Vivian Nguyen, Philippe E. Zimmern, Kelli L. Palmer, Nicole J. De Nisco +1 more

Papers

Driven by 27 papers — median percentile 0. Top paper: “Genetic and functional enrichments associated with Enterococcus faecalis isolated from the urinary tract”.

Genetic and functional enrichments associated with Enterococcus faecalis isolated from the urinary tract

mBio(2023)10.1128/mbio.02515-23
N/A
0.654DataRank · unranked
21 citations

Amanda P. Arute, Amber Nguyen, Suman Tiwari, Sri Snehita Reddy Bonthu, Neha V. Hulyalkar +7 more

Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies

Journal of Visualized Experiments(2021)10.3791/62872
Top 43%
0.428DataRank
Top 43%9 citations

Neha V. Hulyalkar, Vivian Nguyen, Philippe E. Zimmern, Kelli L. Palmer, Nicole J. De Nisco +1 more

Inter-species diversity and functional genomic analyses of closed genome assemblies of clinically isolated, megaplasmid-containing Enterococcus raffinosus Er676 and ATCC49464

Access Microbiology(2023)10.1099/acmi.0.000508.v3
N/A
0.261DataRank · unranked
4 citations

Neha V. Hulyalkar, Philippe E. Zimmern, Kelli L. Palmer, Nicole J. De Nisco, Belle M. Sharon

Hybrid De Novo Genome Assembly for the Generation of Complete Genomes of Urinary Bacteria using Short- and Long-read Sequencing Technologies

Journal of Visualized Experiments(2021)10.3791/62872-v
Top 100%
0DataRank
Top 100%0 citations

Neha V. Hulyalkar, Vivian Nguyen, Philippe E. Zimmern, Kelli L. Palmer, Nicole J. De Nisco +1 more

Recurrent urinary tract infection and estrogen shape the taxonomic ecology and function of the postmenopausal urogenital microbiome

Cell Reports Medicine(2022)10.1016/j.xcrm.2022.100753
N/A
0DataRank · unranked
80 citations

Ashwani Kumar, Neha V. Hulyalkar, Kevin C. Lutz, Vivian Nguyen, Jorge Fuentes +14 more

A Survey of Statistical Methods for Microbiome Data Analysis

Frontiers in Applied Mathematics and Statistics(2022)10.3389/fams.2022.884810
N/A
0DataRank · unranked
53 citations

Shuang Jiang, Michael L. Neugent, Nicole J. De Nisco, Xiaowei Zhan, Qiwei Li +1 more

Gut-bladder axis enters the stage: Implication for recurrent urinary tract infections

Cell Host & Microbe(2022)10.1016/j.chom.2022.07.008
N/A
0DataRank · unranked
51 citations

Michael L. Neugent, Nicole J. De Nisco, Indira U. Mysorekar, Arnold Salazar

Conserved FimK truncation coincides with increased expression of type 3 fimbriae and cultured bladder epithelial cell association in Klebsiella quasipneumoniae

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.27.489788
N/A
0DataRank · unranked
0 citations

Yalini H. Wijesundara, Fabian C. Herbert, Jeremiah J. Gassensmith, Philippe E. Zimmern, Nicole J. De Nisco +1 more

Aging-Associated Augmentation of Gut Microbiome Virulence Capability Drives Sepsis Severity

mBio(2023)10.1128/mbio.00052-23
N/A
0DataRank · unranked
18 citations

Joshua M. Kirsch, Christopher L. Erzen, Christophe Langouët-Astrié, Grace E. Thompson, Sarah A. McMurtry +14 more

Urinary Glycosaminoglycans are Associated with Recurrent UTI and Urobiome Ecology in Postmenopausal Women

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.11.523678
N/A
0DataRank · unranked
5 citations

Neha V. Hulyalkar, Ashwani Kumar, Chao Xing, Philippe E. Zimmern, Vladimir Shulaev +2 more

Functional and genetic adaptations contributing to Enterococcus faecalis persistence in the female urinary tract

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.18.541374
N/A
0DataRank · unranked
1 citations

Amanda P. Arute, Amber Nguyen, Suman Tiwari, Sri Snehita Reddy Bonthu, Neha V. Hulyalkar +7 more

Aging-associated augmentation of gut microbiome virulence capability drives sepsis severity

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.10.523523
N/A
0DataRank · unranked
0 citations

Joshua M. Kirsch, Christopher L. Erzen, Christophe Langouët-Astrié, Grace E. Thompson, Sarah A. McMurtry +14 more

A generalized Bayesian stochastic block model for microbiome community detection

arXiv (Cornell University)(2023)10.48550/arxiv.2308.14671
N/A
0DataRank · unranked
0 citations

Michael L. Neugent, Tejasv Bedi, Nicole J. De Nisco, Qiwei Li, Kevin C. Lutz

Complete genomes of Limosilactobacillus portuensis and Limosilactobacillus vaginalis isolated from the urine of postmenopausal women

Microbiology Resource Announcements(2023)10.1128/mra.00883-23
Top 100%
0DataRank
Top 100%0 citations

Belle M. Sharon, Braden M. Shipman, Philippe E. Zimmern, Nicole J. De Nisco, Vivian Nguyen

The Human Urinary Microbiome and Its Potential Role in Urinary Tract Infections

European Urology Focus(2024)10.1016/j.euf.2024.12.005
N/A
0DataRank · unranked
13 citations

Michael L. Neugent, Nicole J. De Nisco, Ceejay N. Saenz

Inflammatory markers for improved recurrent UTI diagnosis in postmenopausal women

Life Science Alliance(2024)10.26508/lsa.202302323
N/A
0DataRank · unranked
16 citations

Ujjaini Basu, Kevin C. Lutz, Jashkaran Gadhvi, Jessica Komarovsky, Qiwei Li +3 more

Function and contribution of two putative Enterococcus faecalis glycosaminoglycan degrading enzymes to bacteremia and catheter-associated urinary tract infection

Infection and Immunity(2024)10.1128/iai.00199-24
N/A
0DataRank · unranked
10 citations

Braden M. Shipman, Benjamin C. Hunt, Brian S. Learman, Aimee L. Brauer, Serena P. Zhou +4 more

Overcoming challenges in the management of recurrent urinary tract infections

Expert Review of Anti-infective Therapy(2024)10.1080/14787210.2024.2412628
N/A
0DataRank · unranked
11 citations

Ujjaini Basu, Philippe E. Zimmern, Nicole J. De Nisco, Samuel A. Cornelius

VesiX cetylpyridinium chloride is rapidly bactericidal and reduces uropathogenic Escherichia coli bladder epithelial cell invasion in vitro

Microbiology Spectrum(2024)10.1128/spectrum.02712-23
N/A
0DataRank · unranked
4 citations

Samuel S. Chang, Krutika A. Pandit, Prachi Khekare, W. Randolph Warner, Philippe E. Zimmern +2 more

Bladder-resident bacteria associated with increased risk of recurrence after electrofulguration in women with antibiotic-recalcitrant urinary tract infection

medRxiv(2024)10.1101/2024.07.03.24309902
N/A
0DataRank · unranked
4 citations

Parker Kenee, Kevin C. Lutz, Fatima Khan, Qiwei Li, Philippe E. Zimmern +2 more

Urinary biochemical ecology reveals microbiome-metabolite interactions and metabolic markers of recurrent urinary tract infection

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.22.619727
N/A
0DataRank · unranked
0 citations

Neha V. Hulyalkar, Debasish Ghosh, Ceejay N. Saenz, Philippe E. Zimmern, Vladimir Shulaev +2 more

Urinary biochemical ecology reveals microbiome-metabolite interactions and metabolic markers of recurrent urinary tract infection

npj Biofilms and Microbiomes(2025)10.1038/s41522-025-00844-1
N/A
0DataRank · unranked
6 citations

Neha V. Hulyalkar, Debasish Ghosh, Ceejay N. Saenz, Philippe E. Zimmern, Vladimir Shulaev +2 more

Fluorescent molecular probe for in vivo and in vitro targeting and imaging of an intracellular bacterial infection

Chemical Science(2025)10.1039/d4sc05680a
N/A
0DataRank · unranked
7 citations

Miguel Gaspar, Yalini H. Wijesundara, Dong‐Hao Li, Jashkaran Gadhvi, Ryanne N. Ehrman +13 more

Manipulation of IRE1-dependent MAPK signaling by a Vibrio agonist-antagonist effector pair

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.09.01.278937
N/A
0DataRank · unranked
3 citations

Amanda K. Casey, Mohammed Kanchwala, Alexander E. Lafrance, Fatma S. Coskun, Lisa N. Kinch +4 more

A Generalized Bayesian Stochastic Block Model for Microbiome Community Detection

Statistics in Medicine(2025)10.1002/sim.10291
N/A
0DataRank · unranked
4 citations

Michael L. Neugent, Tejasv Bedi, Nicole J. De Nisco, Qiwei Li, Kevin C. Lutz

Manipulation of IRE1-Dependent MAPK Signaling by a Vibrio Agonist-Antagonist Effector Pair

mSystems(2021)10.1128/msystems.00872-20
N/A
0DataRank · unranked
8 citations

Amanda K. Casey, Mohammed Kanchwala, Alexander E. Lafrance, Fatma S. Coskun, Lisa N. Kinch +4 more

Recurrent urinary tract infection and estrogen shape the taxonomic ecology and functional potential of the postmenopausal urobiome

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.11.06.467345
N/A
0DataRank · unranked
4 citations

Ashwani Kumar, Neha V. Hulyalkar, Kevin C. Lutz, Vivian Nguyen, Jorge Fuentes +14 more