Benjamin H. Good

Also affiliated with Chan Zuckerberg Initiative (United States), Stanford University

Biochemistry, Genetics and Molecular BiologySocial SciencesMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 32 papers. Top paper: “Quantifying the interplay between rapid bacterial evolution within the mouse intestine and transmission between hosts”.

Quantifying the interplay between rapid bacterial evolution within the mouse intestine and transmission between hosts

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.04.412072

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0DataRank · unranked

5 citations

Lisa Willis, Nate Cira, Katharine M. Ng, Miguel F. Pedro, Andrés Aranda-Díaz +11 more

Quantifying rapid bacterial evolution and transmission within the mouse intestine

Cell Host & Microbe(2021)10.1016/j.chom.2021.08.003

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0DataRank · unranked

56 citations

Lisa Willis, Nate Cira, Katharine M. Ng, Miguel F. Pedro, Andrés Aranda-Díaz +11 more

Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment

Genome Research(2021)10.1101/gr.265058.120

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0DataRank · unranked

107 citations

Benjamin H. Good, Nandita R. Garud, Stephen Martis, Mohan Avula, Wenyu Zhou +7 more

Competition for fluctuating resources reproduces statistics of species abundance over time across wide-ranging microbiotas

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.13.444061

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0DataRank · unranked

6 citations

Benjamin H. Good, Kerwyn Casey Huang, Po-Yi Ho

Population genetics of polymorphism and divergence in rapidly evolving populations

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.28.450258

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0DataRank · unranked

1 citations

Benjamin H. Good, Daniel S. Fisher, Michael M Desai, Matthew J. Melissa

Competition for fluctuating resources reproduces statistics of species abundance over time across wide-ranging microbiotas

eLife(2022)10.7554/elife.75168

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0DataRank · unranked

81 citations

Benjamin H. Good, Kerwyn Casey Huang, Po-Yi Ho

Population genetics of polymorphism and divergence in rapidly evolving populations

Genetics(2022)10.1093/genetics/iyac053

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0DataRank · unranked

25 citations

Benjamin H. Good, Daniel S. Fisher, Michael M Desai, Matthew J. Melissa

Dynamics of bacterial recombination in the human gut microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.24.505183

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0DataRank · unranked

9 citations

Benjamin H. Good, Zhiru Liu

Limited codiversification of the gut microbiota with humans

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.10.27.514143

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0DataRank · unranked

9 citations

Benjamin H. Good

Quantifying the local adaptive landscape of a nascent bacterial community

Nature Communications(2023)10.1038/s41467-022-35677-5

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0DataRank · unranked

445 citations

Kelly M. Wetmore, Benjamin H. Good, Adam P. Arkin, Oskar Hallatschek, Joao A Ascensao

Eco-evolutionary feedbacks in the human gut microbiome

Nature Communications(2023)10.1038/s41467-023-42769-3

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0DataRank · unranked

27 citations

Layton B. Rosenfeld, Benjamin H. Good

Within-host evolution of the gut microbiome

Current Opinion in Microbiology(2023)10.1016/j.mib.2022.102258

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0DataRank · unranked

34 citations

Daniel P.G.H. Wong, Kimberly S. Vasquez, Karina B. Xavier, Kerwyn Casey Huang, Benjamin H. Good +1 more

Prolonged delays in human microbiota transmission after a controlled antibiotic perturbation

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.26.559480

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0DataRank · unranked

22 citations

Sophie Jean Walton, D.A. Goldman, Maike L. Morrison, Adrian J. Verster, Autumn B. Parrott +9 more

A mutant fitness compendium in Bifidobacteria reveals molecular determinants of colonization and host-microbe interactions

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.08.29.555234

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0DataRank · unranked

15 citations

Jiawei Sun, Rebecca N. Culver, Arvie Violette, Charles Wynter, Marta Nieckarz +23 more

Competition for shared resources increases dependence on initial population size during coalescence of gut microbial communities

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.29.569120

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0DataRank · unranked

2 citations

Katherine S. Xue, Autumn B. Parrott, Rashi R. Jeeda, Lauryn R. Franzese, Jaime G Lopez +6 more

Predicting the First Steps of Evolution in Randomly Assembled Communities

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.15.571925

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0DataRank · unranked

2 citations

Benjamin H. Good, John McEnany

Dynamics of bacterial recombination in the human gut microbiome

PLoS Biology(2024)10.1371/journal.pbio.3002472

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0DataRank · unranked

34 citations

Benjamin H. Good, Zhiru Liu

Quantifying the adaptive landscape of commensal gut bacteria using high-resolution lineage tracking

Nature Communications(2024)10.1038/s41467-024-45792-0

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0DataRank · unranked

20 citations

Benjamin H. Good, Daniel P.G.H. Wong

Predicting the first steps of evolution in randomly assembled communities

Nature Communications(2024)10.1038/s41467-024-52467-3

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0DataRank · unranked

6 citations

Benjamin H. Good, John McEnany

Linkage equilibrium between rare mutations

Genetics(2024)10.1093/genetics/iyae145

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0DataRank · unranked

5 citations

Zhiru Liu, Benjamin H. Good, Anastasia S. Lyulina

Abundance measurements reveal the balance between lysis and lysogeny in the human gut microbiome

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.27.614587

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0DataRank · unranked

6 citations

Saria McKeithen-Mead, Handuo Shi, Taylor H. Nguyen, Kerwyn Casey Huang, Benjamin H. Good +1 more

Linkage equilibrium between rare mutations

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.28.587282

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0DataRank · unranked

0 citations

Zhiru Liu, Benjamin H. Good, Anastasia S. Lyulina

Direct and indirect selection in a proofreading polymerase

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.10.14.618309

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0DataRank · unranked

0 citations

Vedant Sachdeva, Riccardo Ravasio, Michele Peruzzo, Wanqiang Liu, Benjamin H. Good +2 more

Competition for shared resources increases dependence on initial population size during coalescence of gut microbial communities

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2322440122

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0DataRank · unranked

23 citations

Katherine S. Xue, Autumn B. Parrott, Jamie A. Lopez, Jean C. C. Vila, Rashi R. Jeeda +9 more

Genome-scale resources in the infant gut symbiont Bifidobacterium breve reveal genetic determinants of colonization and host-microbe interactions

Cell(2025)10.1016/j.cell.2025.02.010

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0DataRank · unranked

22 citations

Jiawei Sun, Rebecca N. Culver, Arvie Violette, Char Wynter, Marta Nieckarz +24 more

Abundance measurements reveal the balance between lysis and lysogeny in the human gut microbiome

Current Biology(2025)10.1016/j.cub.2025.03.073

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0DataRank · unranked

20 citations

Saria McKeithen-Mead, Handuo Shi, Taylor H. Nguyen, Kerwyn Casey Huang, Benjamin H. Good +1 more

Low-dimensional genotype-fitness mapping across divergent environments suggests a limiting functions model of fitness

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.04.05.647371

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0DataRank · unranked

4 citations

Grant Kinsler, Benjamin H. Good, Dmitri A. Petrov, Olivia M. Ghosh

Prehistoric Global Migration of Vanishing Gut Microbes With Humans

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.15.670570

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0DataRank · unranked

3 citations

Zhiru Liu, Matthew R. Olm, Mélanie Martin, Daniel D. Sprockett, Benjamin C. Trumble +9 more

Gut microbe-derived lactic acid optimizes host energy metabolism during starvation

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.27.656452

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0DataRank · unranked

1 citations

Jaime G Lopez, Amin M. Sajjadian, Robert Scheffler, Brian C. DeFelice, William B. Ludington +4 more

Dynamics of dN/dS within recombining bacterial populations

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.09.675256

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1 citations

Benjamin H. Good, Zhiru Liu

Ecological diversification in rapidly evolving populations

eLife(2025)10.1101/2025.09.15.676408

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0DataRank · unranked

0 citations

Benjamin H. Good, Daniel P.G.H. Wong

Modeling the Synergetic Dynamics of B cells and TFH cells in Germinal Center Reactions

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.11.27.691027

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0DataRank · unranked

0 citations

Julia Merkenschlager, Quan Pham, Benjamin H. Good, Michel C. Nussenzweig, Ned S. Wingreen +1 more