Hongxu Ding

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 22 papers. Top paper: “Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling”.

Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling

eLife(2022)10.7554/elife.76562

N/A

1.6DataRank · unranked

46 citations

Jason Talkish, Hongxu Ding, Haller Igel, Alejandra Durán, Shreya Mantripragada +3 more

Airway basal cells show regionally distinct potential to undergo metaplastic differentiation

eLife(2022)10.7554/elife.80083

N/A

1.4DataRank · unranked

56 citations

Ying Yang, Lihao Guo, Jun Qian, Jian Ge, Débora Sinner +4 more

VEGA is an interpretable generative model for inferring biological network activity in single-cell transcriptomics

Nature Communications(2021)10.1038/s41467-021-26017-0

N/A

0DataRank · unranked

110 citations

Ioannis N. Anastopoulos, Hongxu Ding, Joshua M. Stuart, Lucas Seninge

BACH2 inhibition reverses β cell failure in type 2 diabetes models

Journal of Clinical Investigation(2021)10.1172/jci153876

N/A

0DataRank · unranked

74 citations

Hongxu Ding, Thomas B. Farb, Alexander M. Efanov, Jiajun Sun, Julie L. Gore +6 more

Towards inferring nanopore sequencing ionic currents from nucleotide chemical structures

Nature Communications(2021)10.1038/s41467-021-26929-x

N/A

0DataRank · unranked

10 citations

Ioannis N. Anastopoulos, Andrew D. Bailey, Joshua M. Stuart, Benedict Paten, Hongxu Ding

Concerted modification of nucleotides at functional centers of the ribosome revealed by single-molecule RNA modification profiling

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.12.16.472988

N/A

0DataRank · unranked

1 citations

Jason Talkish, Hongxu Ding, Haller Igel, Alejandra Durán, Shreya Mantripragada +3 more

Notch-mediated Ephrin signaling disrupts islet architecture and β cell function

JCI Insight(2022)10.1172/jci.insight.157694

N/A

0DataRank · unranked

15 citations

Nina Suda, Junjie Yu, Changyu Zhu, Jinsook Son, Hongxu Ding +4 more

Airway Basal Cells Show Regionally Distinct Potential to Undergo Metaplastic Differentiation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.04.490677

N/A

0DataRank · unranked

2 citations

Ying Yang, Jun Qian, Jian Ge, Débora Sinner, Hongxu Ding +3 more

Genetic and pharmacologic inhibition of ALDH1A3 as a treatment of β-cell failure

Nature Communications(2023)10.1038/s41467-023-36315-4

N/A

0DataRank · unranked

60 citations

Wen Du, Mark Esposito, Kaavian Shariati, Hongxu Ding, Yibin Kang +2 more

E2F1 Mediates SOX17 Deficiency–Induced Pulmonary Hypertension

Hypertension(2023)10.1161/hypertensionaha.123.21241

N/A

0DataRank · unranked

20 citations

Bin Liu, Hongxu Ding, Shuai Li, Rebecca Li, Jiakai Pan +13 more

E2F1 Mediates SOX17 Deficiency-Induced Pulmonary Hypertension

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.15.528740

N/A

0DataRank · unranked

2 citations

Bin Liu, Hongxu Ding, Shuai Li, Rebecca Li, Jiakai Pan +14 more

A Spatiotemporal and Machine-Learning Platform Accelerates the Manufacturing of hPSC-derived Esophageal Mucosa

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.24.563664

N/A

0DataRank · unranked

1 citations

Carmel Grace McCullough, Lucas Seninge, Lihao Guo, Woo-Joo Kwon, Yongchun Zhang +12 more

General Capillary Endothelial Cells Undergo Reprogramming Into Arterial Endothelial Cells in Pulmonary Hypertension Through HIF-2α/Notch4 Pathway

Circulation(2024)10.1161/circulationaha.123.067981

N/A

0DataRank · unranked

25 citations

Dan Yi, Xiaomei Xia, Karina Ramírez, Hanqiu Zhao, Yanhong Cao +10 more

Single Cell Analysis of Lung Lymphatic Endothelial Cells and Lymphatic Responses during Influenza Infection

Journal of Respiratory Biology and Translational Medicine(2024)10.35534/jrbtm.2024.10003

N/A

0DataRank · unranked

8 citations

Hongxia Shao, Hongxu Ding, Yuefeng Huang, Xuebing Wu, Jie Sun +2 more

β-cell Jagged1 is sufficient but not necessary for islet Notch activity and insulin secretory defects in obese mice

Molecular Metabolism(2024)10.1016/j.molmet.2024.101894

N/A

0DataRank · unranked

4 citations

Alberto Bartolomé, Jiani Liang, Jinsook Son, Yoko Yagishita, Christian W. Siebel +4 more

The Precise Basecalling of Short-Read Nanopore Sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.12.612746

N/A

0DataRank · unranked

2 citations

Mei‐Juan Tu, Chengcheng Song, Ziyang Liu, Katherine K. Wang, Shuibing Chen +3 more

An Iterative Approach to Polish the Nanopore Sequencing Basecalling for Therapeutic RNA Quality Control

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.12.612711

N/A

0DataRank · unranked

0 citations

Mei‐Juan Tu, Ziyang Liu, Katherine K. Wang, Yinshan Fang, Ning Hao +6 more

A spatiotemporal and machine-learning platform facilitates the manufacturing of hPSC-derived esophageal mucosa

Developmental Cell(2025)10.1016/j.devcel.2024.12.030

N/A

0DataRank · unranked

6 citations

Carmel Grace McCullough, Lucas Seninge, Lihao Guo, Woo-Joo Kwon, Yongchun Zhang +12 more

Impact of Posttranscriptional Modifications in Novel Bioengineered RNAs (Abstract ID: 163872)

Journal of Pharmacology and Experimental Therapeutics(2025)10.1016/j.jpet.2024.101682

N/A

0DataRank · unranked

0 citations

Mei‐Juan Tu, Ziyuan Wang, Patrick A. Limbach, Hongxu Ding, Ai‐Ming Yu +1 more

Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts

Bioinformatics(2020)10.1093/bioinformatics/btaa601

N/A

0DataRank · unranked

29 citations

Andrew D. Bailey, Miten Jain, Hugh E. Olsen, Benedict Paten, Hongxu Ding

A reference-guided iterative approach to polish the nanopore sequencing basecalling for therapeutic RNA quality control

Communications Biology(2025)10.1038/s42003-025-08811-4

N/A

0DataRank · unranked

0 citations

Mei‐Juan Tu, Ziyang Liu, Katherine K. Wang, Yinshan Fang, Ning Hao +6 more

Towards Inferring Nanopore Sequencing Ionic Currents from Nucleotide Chemical Structures

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.30.404947

N/A

0DataRank · unranked

2 citations

Ioannis N. Anastopoulos, Andrew D. Bailey, Joshua M. Stuart, Benedict Paten, Hongxu Ding