Hamed Khalili

Also affiliated with Harvard University, Massachusetts General Hospital

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 3%percentile

1.1Author DataRank

Indexed papers

2in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Celiac disease and risk of microscopic colitis: A nationwide population‐based matched cohort study

United European Gastroenterology Journal(2023)10.1002/ueg2.12374

Top 32%

0.620DataRank

Top 32%20 citations

Hamed Khalili, Benjamin Lebwohl, Björn Roelstraete, Peter H.R. Green, Jonas F. Ludvigsson +1 more

Papers

Driven by 40 papers — median percentile 63. Top paper: “Effect of Low-dose and Standard-dose Aspirin on PGE2 Biosynthesis Among Individuals with Colorectal Adenomas: A Randomized Clinical Trial”.

Effect of Low-dose and Standard-dose Aspirin on PGE2 Biosynthesis Among Individuals with Colorectal Adenomas: A Randomized Clinical Trial

Cancer Prevention Research(2020)10.1158/1940-6207.capr-20-0216

N/A

1.2DataRank · unranked

38 citations

Madeline M. Schuck, Marina V. Magicheva-Gupta, Kathleen O. Stewart, Katherine K. Gilpin, Patrick Miller +27 more

Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis

bioRxiv (Cold Spring Harbor Laboratory)(2019)10.1101/455451

N/A

1.1DataRank · unranked

19 citations

Moshe Biton, Keri M. Sullivan, Grace Burgin, Daniel B. Graham, Rebecca H. Herbst +24 more

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis

Cell(2019)10.1016/j.cell.2019.06.029

N/A

1.1DataRank · unranked

1412 citations

Moshe Biton, Keri M. Sullivan, Grace Burgin, Daniel B. Graham, Rebecca H. Herbst +28 more

Mortality in biopsy-confirmed nonalcoholic fatty liver disease: results from a nationwide cohort

Gut(2020)10.1136/gutjnl-2020-322786

N/A

0.970DataRank · unranked

643 citations

Björn Roelstraete, Hamed Khalili, Hannes Hagström, Jonas F. Ludvigsson, Tracey G. Simon

Celiac disease and risk of microscopic colitis: A nationwide population‐based matched cohort study

United European Gastroenterology Journal(2023)10.1002/ueg2.12374

Top 32%

0.620DataRank

Top 32%20 citations

Hamed Khalili, Benjamin Lebwohl, Björn Roelstraete, Peter H.R. Green, Jonas F. Ludvigsson +1 more

Sequencing of over 100,000 individuals identifies multiple genes and rare variants associated with Crohns disease susceptibility

medRxiv(2021)10.1101/2021.06.15.21258641

N/A

0.500DataRank · unranked

11 citations

Christine Stevens, Guhan Venkataraman, Kai Yuan, Brandon E. Avila, María T. Abreu +95 more

Clinical Characteristics and Treatment Response in Microscopic Colitis Based on Age at Diagnosis: A Multicenter Retrospective Study

Digestive Diseases and Sciences(2021)10.1007/s10620-021-07162-4

Top 42%

0.448DataRank

Top 42%8 citations

Jessica McGoldrick, Eli Voth, Daniel D. Penrice, June Tome, Amandeep Gujral +5 more

Healthy Lifestyle Is Associated With Reduced Mortality in Patients With Inflammatory Bowel Diseases

Clinical Gastroenterology and Hepatology(2020)10.1016/j.cgh.2020.02.047

N/A

0DataRank · unranked

86 citations

Hamed Khalili, Mingyang Song, Paul Lochhead, Kristin E. Burke, James M. Richter +4 more

Immune‐mediated diseases and risk of Crohn’s disease or ulcerative colitis: a prospective cohort study

Alimentary Pharmacology & Therapeutics(2020)10.1111/apt.16210

N/A

0DataRank · unranked

29 citations

Hamed Khalili, Paul Lochhead, Mingyang Song, Emily W. Lopes, Kristin E. Burke +4 more

Acid-suppressive medications and risk of colorectal cancer: results from three large prospective cohort studies

British Journal of Cancer(2020)10.1038/s41416-020-0939-y

N/A

0DataRank · unranked

28 citations

Xuehong Zhang, Vicente Morales‐Oyarvide, Chen Yuan, Natalia Khalaf, Hamed Khalili +10 more

Fruit and vegetable consumption is associated with lower prevalence of asymptomatic diverticulosis: a cross-sectional colonoscopy-based study

Research Square(2020)10.21203/rs.2.21117/v1

N/A

0DataRank · unranked

1 citations

Jessica McGoldrick, Danielle Bellavance, Po‐Hong Liu, Ramnik J. Xavier, Joseph C. Yarze +5 more

Multi-omics reveal microbial determinants impacting responses to biologic therapies in inflammatory bowel disease

Cell Host & Microbe(2021)10.1016/j.chom.2021.06.019

N/A

0DataRank · unranked

220 citations

Damian R. Plichta, Larson Hogstrom, Nienke Z. Borren, Helena Lau, Sara Gregory +7 more

Cancer Risk in Patients With Biopsy‐Confirmed Nonalcoholic Fatty Liver Disease: A Population‐Based Cohort Study

Hepatology(2021)10.1002/hep.31845

N/A

0DataRank · unranked

176 citations

Björn Roelstraete, Rajani Sharma, Hamed Khalili, Hannes Hagström, Jonas F. Ludvigsson +1 more

Ultra-processed Foods and Risk of Crohn’s Disease and Ulcerative Colitis: A Prospective Cohort Study

Clinical Gastroenterology and Hepatology(2021)10.1016/j.cgh.2021.08.031

N/A

0DataRank · unranked

162 citations

Neha Khandpur, Sinara Laurini Rossato, Paul Lochhead, Emily W. Lopes, Kristin E. Burke +9 more

Non-alcoholic fatty liver disease in children and young adults is associated with increased long-term mortality

Journal of Hepatology(2021)10.1016/j.jhep.2021.06.034

N/A

0DataRank · unranked

139 citations

Björn Roelstraete, Kayla Hartjes, Uzma Shah, Hamed Khalili, Henrik Arnell +2 more

Obesity is Associated With Increased Risk of Crohn’s disease, but not Ulcerative Colitis: A Pooled Analysis of Five Prospective Cohort Studies

Clinical Gastroenterology and Hepatology(2021)10.1016/j.cgh.2021.06.049

N/A

0DataRank · unranked

78 citations

Ye Chen, Kevin Casey, Ola Olén, Jonas F. Ludvigsson, Franck Carbonnel +34 more

Plasma concentrations of perfluoroalkyl substances and risk of inflammatory bowel diseases in women: A nested case control analysis in the Nurses’ Health Study cohorts

Environmental Research(2021)10.1016/j.envres.2021.112222

N/A

0DataRank · unranked

24 citations

Hamed Khalili, Ashwin N. Ananthakrishnan, Kristin E. Burke, James M. Richter, Qi Sun +3 more

Dietary Gluten Intake Is Not Associated With Risk of Inflammatory Bowel Disease in US Adults Without Celiac Disease

Clinical Gastroenterology and Hepatology(2021)10.1016/j.cgh.2021.03.029

N/A

0DataRank · unranked

15 citations

Benjamin Lebwohl, Kristin E. Burke, Kerry L. Ivey, Ashwin N. Ananthakrishnan, Paul Lochhead +6 more

Association Between Collagenous and Lymphocytic Colitis and Risk of Severe Coronavirus Disease 2019

Gastroenterology(2021)10.1053/j.gastro.2021.02.029

N/A

0DataRank · unranked

6 citations

Tenghao Zheng, Jonas Söderling, Emma Larsson, Andreas Münch, Klas Sjöberg +13 more

Antibiotic use and the development of inflammatory bowel disease: a national case-control study in Sweden

The Lancet. Gastroenterology & hepatology(2020)10.1016/s2468-1253(20)30267-3

N/A

0DataRank · unranked

245 citations

Anne K. Örtqvist, Yin Cao, Tracey G. Simon, Björn Roelstraete, Mingyang Song +7 more

Large-scale sequencing identifies multiple genes and rare variants associated with Crohn’s disease susceptibility

Nature Genetics(2022)10.1038/s41588-022-01156-2

N/A

0DataRank · unranked

192 citations

Christine Stevens, Guhan Venkataraman, Kai Yuan, Brandon E. Avila, Maria T. Abreu +95 more

Lifestyle factors for the prevention of inflammatory bowel disease

Gut(2022)10.1136/gutjnl-2022-328174

N/A

0DataRank · unranked

85 citations

Simon Chan, Mingyang Song, Jonas F. Ludvigsson, Niclas Håkansson, Paul Lochhead +12 more

Prevalence and Implications of Frailty in Older Adults With Incident Inflammatory Bowel Diseases: A Nationwide Cohort Study

Clinical Gastroenterology and Hepatology(2022)10.1016/j.cgh.2022.01.001

N/A

0DataRank · unranked

53 citations

Juulia Jylhävä, Jonas Söderling, Christine S. Ritchie, Malin Olsson, Henrik Hjortswang +17 more

Inflammatory Bowel Disease Is Associated With Prediagnostic Perturbances in Metabolic Pathways

Gastroenterology(2022)10.1053/j.gastro.2022.09.007

N/A

0DataRank · unranked

38 citations

Ryan C. Ungaro, Lauren Petrick, Andrew T. Chan, Chad K. Porter, Hamed Khalili +18 more

Risk Factors for Incident Inflammatory Bowel Disease According to Disease Phenotype

Clinical Gastroenterology and Hepatology(2022)10.1016/j.cgh.2022.01.003

N/A

0DataRank · unranked

16 citations

Paul Lochhead, Kristin E. Burke, James M. Richter, Ashwin N. Ananthakrishnan, Andrew T. Chan +2 more

Smoking Behaviour Changes After Diagnosis of Inflammatory Bowel Disease and Risk of All-cause Mortality

Journal of Crohn s and Colitis(2022)10.1093/ecco-jcc/jjac015

N/A

0DataRank · unranked

4 citations

Emily W. Lopes, Kristin E. Burke, Ashwin N. Ananthakrishnan, James M. Richter, Chun‐Han Lo +4 more

Epidemiology of Inflammatory Bowel Disease in a Cohort of US Black Women

medRxiv(2022)10.1101/2022.07.14.22277547

N/A

0DataRank · unranked

2 citations

Maame Araba E. Buadu, Hamed Khalili, Yvette C. Cozier, Adjoa Anyane‐Yeboa

Comparative Effectiveness of Upadacitinib and Tofacitinib in Inducing Remission in Ulcerative Colitis: Real-World Data

Clinical Gastroenterology and Hepatology(2023)10.1016/j.cgh.2023.03.040

N/A

0DataRank · unranked

46 citations

Ashwin N. Ananthakrishnan, Kristin E. Burke, Bharati Kochar, Emily W. Lopes, Hamed Khalili +2 more

Association of distinct microbial signatures with premalignant colorectal adenomas

Cell Host & Microbe(2023)10.1016/j.chom.2023.04.007

N/A

0DataRank · unranked

46 citations

Damian R. Plichta, Shreya Asher, Marisa DelSignore, Tiffany Jeong, Jessica McGoldrick +5 more

Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution

Nature Genetics(2023)10.1038/s41588-023-01586-6

N/A

0DataRank · unranked

43 citations

Amber Shen, Saisriram Gurajala, Aparna Nathan, Laurie Rumker, Vitor R. C. Aguiar +95 more

Dietary Inflammatory Potential and Risk of Crohn’s Disease and Ulcerative Colitis

Gastroenterology(2020)10.1053/j.gastro.2020.05.011

N/A

0DataRank · unranked

189 citations

Paul Lochhead, Hamed Khalili, Mingyang Song, Fred K. Tabung, Kristin E. Burke +5 more

Inflammatory Bowel Disease and Risk of Colorectal Polyps: A Nationwide Population-Based Cohort Study From Sweden

Journal of Crohn s and Colitis(2023)10.1093/ecco-jcc/jjad056

N/A

0DataRank · unranked

5 citations

Ola Olén, Jonas Söderling, Björn Roelstraete, Hamed Khalili, Mingyang Song +5 more

Epidemiology of Inflammatory Bowel Disease in a Cohort of US Black Women

Inflammatory Bowel Diseases(2023)10.1093/ibd/izad049

N/A

0DataRank · unranked

4 citations

Maame Araba E. Buadu, Hamed Khalili, Yvette C. Cozier, Adjoa Anyane‐Yeboa

Association of inflammatory bowel disease in first‐degree relatives with risk of colorectal cancer: A nationwide case‐control study in Sweden

International Journal of Cancer(2023)10.1002/ijc.34470

N/A

0DataRank · unranked

3 citations

Ola Olén, Louise Emilsson, Hamed Khalili, Jonas Halfvarson, Mingyang Song +2 more

Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution

medRxiv(2023)10.1101/2023.03.14.23287257

N/A

0DataRank · unranked

10 citations

Amber Shen, Saori Sakaue, Yang Luo, Saisriram Gurajala, Aparna Nathan +23 more

A natural language processing algorithm accurately classifies steatotic liver disease pathology to estimate the risk of cirrhosis

Hepatology Communications(2024)10.1097/hc9.0000000000000403

N/A

0DataRank · unranked

7 citations

Prasanna K. Challa, Eric M. Przybyszewski, Robert M. Wilechansky, Eugenia Uche-Anya, Ashley T. Ott +5 more

13 DAIRY INTAKE AND RISK OF INCIDENT INFLAMMATORY BOWEL DISEASE IN US MEN AND WOMEN

Gastroenterology(2024)10.1016/s0016-5085(24)00502-x

N/A

0DataRank · unranked

1 citations

Kevin Casey, Emily W. Lopes, Kristin E. Burke, Ashwin N. Ananthakrishnan, James M. Richter +3 more

Single-cell transcriptomic characterization of microscopic colitis

Nature Communications(2025)10.1038/s41467-025-59648-8

N/A

0DataRank · unranked

3 citations

Molly F Thomas, Mari Mino–Kenudson, Yuko Kinowaki, Kristin E. Burke, David M. L. Morgan +18 more

Alterations in Fecal Microbiomes and Serum Metabolomes of Fatigued Patients With Quiescent Inflammatory Bowel Diseases

Clinical Gastroenterology and Hepatology(2020)10.1016/j.cgh.2020.03.013

N/A

0DataRank · unranked

64 citations

Damian R. Plichta, Amit D. Joshi, Gracia Bonilla, Vincent Peng, Francis Colizzo +9 more

Dietary Nut and Legume Intake and Risk of Crohn’s Disease and Ulcerative Colitis

Inflammatory Bowel Diseases(2025)10.1093/ibd/izaf032

N/A

0DataRank · unranked

3 citations

Zeling Yu, Shawna E Walsh, Kevin Casey, Ashwin N. Ananthakrishnan, James M. Richter +4 more

Hamed Khalili

Indexed papers

Top data-sharing exemplar

Papers