Karissa Y. Sanbonmatsu

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 21 papers. Top paper: “Zinc-finger protein CNBP alters the 3-D structure of lncRNA Braveheart in solution”.

Zinc-finger protein CNBP alters the 3-D structure of lncRNA Braveheart in solution

Nature Communications(2020)10.1038/s41467-019-13942-4

N/A

0DataRank · unranked

76 citations

Bernhard C. Thiel, Tyler Mrozowich, SCOTT P. HENNELLY, Ivo L. Hofacker, Trushar R. Patel +2 more

Elongation factor-Tu can repetitively engage aminoacyl-tRNA within the ribosome during the proofreading stage of tRNA selection

Proceedings of the National Academy of Sciences(2020)10.1073/pnas.1904469117

N/A

0DataRank · unranked

57 citations

Dylan Girodat, Benjamin Burnett, Mikael Holm, Roger B. Altman, Karissa Y. Sanbonmatsu +3 more

Elongation Factor Tu Switch I Element is a Gate for Aminoacyl-tRNA Selection

Journal of Molecular Biology(2020)10.1016/j.jmb.2020.01.038

N/A

0DataRank · unranked

19 citations

Scott C. Blanchard, Hans‐Joachim Wieden, Karissa Y. Sanbonmatsu, Dylan Girodat

Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein

PLoS Computational Biology(2020)10.1371/journal.pcbi.1008293

N/A

0DataRank · unranked

25 citations

Avik Kumar Pati, Daniel S. Terry, Scott C. Blanchard, Karissa Y. Sanbonmatsu, Dylan Girodat

Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome

UNC Libraries(2020)10.17615/s8gd-7712

N/A

0DataRank · unranked

6 citations

Linda Spremulli, Karissa Y. Sanbonmatsu, R. K. Agrawal, M. R. Sharma, C.-S. Tung +3 more

Four-dimensional chromosome reconstruction elucidates the spatiotemporal reorganization of the mammalian X chromosome

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2107092118

N/A

0DataRank · unranked

45 citations

Chen‐Yu Wang, Andrea J. Kriz, Hunter Michalk, Kevin Tan, Jeannie T. Lee +2 more

Hyper-swivel head domain motions are required for complete mRNA-tRNA translocation and ribosome resetting

Nucleic Acids Research(2022)10.1093/nar/gkac597

N/A

0DataRank · unranked

17 citations

Dylan Girodat, Mikael Holm, Emily J. Rundlet, José Luís Pérez Alejo, Kara Fischer +3 more

Exploring the Energy Landscape of Riboswitches Using Collective Variables Based on Tertiary Contacts

Journal of Molecular Biology(2022)10.1016/j.jmb.2022.167788

N/A

0DataRank · unranked

8 citations

José N. Onuchic, Karissa Y. Sanbonmatsu, Jigneshkumar Dahyabhai Prajapati

Geometric alignment of aminoacyl-tRNA relative to catalytic centers of the ribosome underpins accurate mRNA decoding

Nature Communications(2023)10.1038/s41467-023-40404-9

N/A

0DataRank · unranked

16 citations

Hans‐Joachim Wieden, Scott C. Blanchard, Karissa Y. Sanbonmatsu, Dylan Girodat

Activation of automethylated PRC2 by dimerization on chromatin

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.10.12.562141

N/A

0DataRank · unranked

3 citations

Egor Pavlenko, Trinity Cookis, Linda C. Zirden, Juliane Renn, Ankush Singhal +8 more

Magnesium ions mitigate metastable states in the regulatory landscape of mRNA elements

RNA(2024)10.1261/rna.079767.123

N/A

0DataRank · unranked

11 citations

Susmit Narayan Chaudhury, Jigneshkumar Dahyabhai Prajapati, José N. Onuchic, Karissa Y. Sanbonmatsu, Erdong Ding

Activation of automethylated PRC2 by dimerization on chromatin

Molecular Cell(2024)10.1016/j.molcel.2024.08.025

N/A

0DataRank · unranked

9 citations

Egor Pavlenko, Trinity Cookis, Linda C. Zirden, Juliane Renn, Ankush Singhal +10 more

Supercomputing in the biological sciences: Toward Zettascale and Yottascale simulations

Current Opinion in Structural Biology(2024)10.1016/j.sbi.2024.102889

N/A

0DataRank · unranked

4 citations

Karissa Y. Sanbonmatsu

Human Coronavirus Infection Reorganizes Spatial Genomic Architecture in PermissiveLung Cells.

Research Square(2024)10.21203/rs.3.rs-3979539/v1

N/A

0DataRank · unranked

2 citations

Ankush Singhal, Cullen Roth, Sofiya Micheva‐Viteva, Vrinda Venu, Anna Lappala +4 more

Critical Role of Mg2+ Ions in RNA Folding Transitions: Anchoring the A-Minor Twist in the SAM-II Riboswitch

The Journal of Physical Chemistry B(2025)10.1021/acs.jpcb.5c02586

N/A

0DataRank · unranked

7 citations

Anushree Sinha, Avijit Mainan, Karissa Y. Sanbonmatsu, José N. Onuchic, Susmita Roy +2 more

Human protein synthesis requires aminoacyl-tRNA pivoting during proofreading

Nature Communications(2025)10.1038/s41467-025-63617-6

N/A

0DataRank · unranked

4 citations

Karissa Y. Sanbonmatsu, Dylan Girodat, Divya Sapkota

Conformational heterogeneity in the dGsw purine riboswitch: role of Mg²⁺ and 2’-dG in aptamer folding

RNA(2025)10.1261/rna.080274.124

N/A

0DataRank · unranked

2 citations

Erdong Ding, Nathan Jespersen, José N. Onuchic, Karissa Y. Sanbonmatsu, Susmit Narayan Chaudhury

Widespread 3D genome reorganization precedes programmed DNA rearrangement in Oxytricha trifallax

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2024.12.31.630814

N/A

0DataRank · unranked

2 citations

Manasa Prahlad, Ankush Singhal, Karissa Y. Sanbonmatsu, Laura F. Landweber, Danylo Villano

Regulatory helix plays a key role in genetic ON–OFF switching for the 2′-deoxyguanosine-sensing mRNA element

Journal of Biological Chemistry(2025)10.1016/j.jbc.2025.110282

N/A

0DataRank · unranked

0 citations

Nathan Jespersen, SCOTT P. HENNELLY, Karissa Y. Sanbonmatsu, Susmit Narayan Chaudhury

From 2D to 4D: a Containerized Workflow and Browser to Explore Dynamic Chromatin Architecture

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.07.13.664622

N/A

0DataRank · unranked

0 citations

Cullen Roth, Cameron Tauxe, Jeannie T. Lee, Christina Steadman, Karissa Y. Sanbonmatsu +3 more

Ribosomal tRNA release decoded via multiscale simulations at biological timescales

Research Square(2025)10.21203/rs.3.rs-7966662/v1

N/A

0DataRank · unranked

0 citations

Jigneshkumar Dahyabhai Prajapati, Karissa Y. Sanbonmatsu