Pavel Ivanov

Biochemistry, Genetics and Molecular BiologyEngineering

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 51 papers. Top paper: “Competing Protein-RNA Interaction Networks Control Multiphase Intracellular Organization”.

Competing Protein-RNA Interaction Networks Control Multiphase Intracellular Organization

Cell(2020)10.1016/j.cell.2020.03.050

N/A

1.0DataRank · unranked

831 citations

Nancy Kedersha, Daniel S.W. Lee, Amy R. Strom, Victoria Drake, Joshua A. Riback +12 more

Translon: a single term for translated regions

Nature Methods(2025)10.1038/s41592-025-02810-3

N/A

0.389DataRank · unranked

11 citations

Jack A. S. Tierney, M. Mar Albà, Dmitry E. Andreev, Julie L. Aspden, John F. Atkins +164 more

Molecular mechanisms of stress granule assembly and disassembly

Biochimica et Biophysica Acta (BBA) - Molecular Cell Research(2020)10.1016/j.bbamcr.2020.118876

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0DataRank · unranked

404 citations

Nancy Kedersha, Paul Anderson, Pavel Ivanov, Sarah Hofmann

Mammalian stress granules and P bodies at a glance

Journal of Cell Science(2020)10.1242/jcs.242487

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0DataRank · unranked

390 citations

Nancy Kedersha, Pavel Ivanov, Paul Anderson, Claire L. Riggs

Spatiotemporal Proteomic Analysis of Stress Granule Disassembly Using APEX Reveals Regulation by SUMOylation and Links to ALS Pathogenesis

Molecular Cell(2020)10.1016/j.molcel.2020.10.032

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0DataRank · unranked

267 citations

Aviad Siany, Nancy Kedersha, Naama Knafo, Natalia Rivkin, Yehuda M. Danino +22 more

Stress granule subtypes: an emerging link to neurodegeneration

Cellular and Molecular Life Sciences(2020)10.1007/s00018-020-03565-0

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0DataRank · unranked

122 citations

Pavel Ivanov, Vivek M. Advani

eIF4G has intrinsic G-quadruplex binding activity that is required for tiRNA function

Nucleic Acids Research(2020)10.1093/nar/gkaa336

N/A

0DataRank · unranked

106 citations

Prakash Kharel, Yasutoshi Akiyama, Sandeep Ojha, Dhwani Dave, В.Б. Цветков +4 more

Fragmentation of extracellular ribosomes and tRNAs shapes the extracellular RNAome

Nucleic Acids Research(2020)10.1093/nar/gkaa674

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0DataRank · unranked

106 citations

Mercedes Segovia, Mauricio Castellano, Fabiana Gámbaro, Yasutoshi Akiyama, Pablo Fagúndez +7 more

TOP mRNPs: Molecular Mechanisms and Principles of Regulation

Biomolecules(2020)10.3390/biom10070969

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0DataRank · unranked

94 citations

Paul Anderson, Pavel Ivanov, Eric Cockman

Tumor Interferon Signaling Is Regulated by a lncRNA INCR1 Transcribed from the PD-L1 Locus

Molecular Cell(2020)10.1016/j.molcel.2020.05.015

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0DataRank · unranked

69 citations

Shawn M. Lyons, Mykola Zdioruk, Niklas von Spreckelsen, Rubén Ferrer-Luna, Hirotaka Ito +18 more

Isolation and initial structure-functional characterization of endogenous tRNA-derived stress-induced RNAs

RNA Biology(2020)10.1080/15476286.2020.1732702

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0DataRank · unranked

63 citations

Prakash Kharel, Takaaki Abe, Paul Anderson, Pavel Ivanov, Yasutoshi Akiyama

Stress Granule Assembly Can Facilitate but Is Not Required for TDP-43 Cytoplasmic Aggregation

Biomolecules(2020)10.3390/biom10101367

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0DataRank · unranked

38 citations

Luke Nero, Shawn M. Lyons, Pavel Ivanov, Telsa M. Mittelmeier, Timothy A. Bolger +2 more

Fragmentation of extracellular ribosomes and tRNAs shapes the extracellular RNAome

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.01.29.923714

N/A

0DataRank · unranked

7 citations

Mercedes Segovia, Fabiana Gámbaro, Yasutoshi Akiyama, Pablo Fagúndez, Bruno Costa +5 more

A novel stress response pathway regulates rRNA biogenesis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.08.16.250183

N/A

0DataRank · unranked

5 citations

Mateusz Sowiński, Marta Leśniczak, Sandeep Ojha, Anaïs Aulas, Dhwani Dave +5 more

TIA1 potentiates tau phase separation and promotes generation of toxic oligomeric tau

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2014188118

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0DataRank · unranked

161 citations

Shuwen Lei, Jenifer E. Shattuck, Samantha Boudeau, Yari Carlomagno, Maria Medalla +12 more

Early rRNA processing is a stress-dependent regulatory event whose inhibition maintains nucleolar integrity

Nucleic Acids Research(2021)10.1093/nar/gkab1231

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0DataRank · unranked

83 citations

Marta Leśniczak-Staszak, Mateusz Sowiński, Sandeep Ojha, Anaïs Aulas, Dhwani Dave +5 more

tiRNA signaling via stress-regulated vesicle transfer in the hematopoietic niche

Cell stem cell(2021)10.1016/j.stem.2021.08.014

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0DataRank · unranked

44 citations

Fei Ji, Michael Mazzola, David B. Sykes, Allison K. Scherer, Anthony Anselmo +14 more

Translation inhibition and suppression of stress granules formation by cisplatin

Biomedicine & Pharmacotherapy(2021)10.1016/j.biopha.2021.112382

N/A

0DataRank · unranked

33 citations

Anaïs Aulas, Marta M. Fay, Marta Leśniczak-Staszak, Mateusz Sowiński, Shawn M. Lyons +3 more

In lysate RNA digestion provides insights into the angiogenin’s specificity towards transfer RNAs

RNA Biology(2021)10.1080/15476286.2021.1930758

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0DataRank · unranked

23 citations

Yoshihisa Tomioka, Takaaki Abe, Paul Anderson, Pavel Ivanov, Yasutoshi Akiyama

Bisphenol A promotes stress granule assembly and modulates the integrated stress response

Biology Open(2021)10.1242/bio.057539

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0DataRank · unranked

19 citations

Daniella Columbo, Cecelia Li Cotter, Chandler Friend, Shawna Henry, Megan Hoppe +13 more

Reg1 and Snf1 regulate stress‐induced relocalization of protein phosphatase‐1 to cytoplasmic granules

FEBS Journal(2021)10.1111/febs.15802

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0DataRank · unranked

8 citations

Marco Jochem, Yagmur Micoogullari, Claire L. Riggs, Pavel Ivanov, Hendrik Welsch +6 more

Stress granules are shock absorbers that prevent excessive innate immune responses to dsRNA

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.26.441141

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0DataRank · unranked

8 citations

Cristhian Cadena, Sadeem Ahmad, Haitao Wang, Tristan X. Jordan, Ehyun Kim +7 more

tiRNA signaling via stress-regulated vesicle transfer in the hematopoietic niche

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.04.13.439696

N/A

0DataRank · unranked

1 citations

Fei Ji, Michael Mazzola, David B. Sykes, Allison K. Scherer, Anthony Anselmo +13 more

Mechanisms of translation inhibition and suppression of Stress Granule formation by cisplatin

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.20.452628

N/A

0DataRank · unranked

1 citations

Anaïs Aulas, Marta M. Fay, Marta Leśniczak-Staszak, Shawn M. Lyons, Witold Szaflarski +2 more

Selective Cleavage at CCA Ends and Anticodon Loops of tRNAs by Stress-Induced RNases

Frontiers in Molecular Biosciences(2022)10.3389/fmolb.2022.791094

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0DataRank · unranked

31 citations

Shawn M. Lyons, Marta M. Fay, Yoshihisa Tomioka, Takaaki Abe, Paul Anderson +2 more

RTCB Complex Regulates Stress-Induced tRNA Cleavage

International Journal of Molecular Sciences(2022)10.3390/ijms232113100

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0DataRank · unranked

26 citations

Yoshika Takenaka, Tomoko Kasahara, Takaaki Abe, Yoshihisa Tomioka, Pavel Ivanov +1 more

Stress promotes RNA G-quadruplex folding in human cells

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.03.03.482884

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0DataRank · unranked

10 citations

Marta M. Fay, Ekaterina V. Manasova, Paul Anderson, Aleksander V. Kurkin, Junjie U. Guo +2 more

A Standardized Ontology for Naming tRNA-derived RNAs Based on Molecular Origin

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.05.06.490965

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0DataRank · unranked

7 citations

Patricia P. Chan, Qi Chen, Pavel Ivanov, Laurence Drouard, Norbert Polacek +3 more

Cytoplasmic processing of human transfer RNAs

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.28.489951

N/A

0DataRank · unranked

6 citations

Shawn M. Lyons, Takaaki Abe, Paul Anderson, Pavel Ivanov, Yasutoshi Akiyama

Nicked tRNAs are stable reservoirs of tRNA halves in cells and biofluids

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.08.31.506125

N/A

0DataRank · unranked

4 citations

Marco Li Calzi, Mauricio Castellano, Valentina Blanco, Ernesto Cuevasanta, Irene Litvan +5 more

Stress granules are shock absorbers that prevent excessive innate immune responses to dsRNA

Molecular Cell(2023)10.1016/j.molcel.2023.03.010

N/A

0DataRank · unranked

146 citations

Cristhian Cadena, Sadeem Ahmad, Haitao Wang, Tristan X. Jordan, Ehyun Kim +7 more

Stress promotes RNA G-quadruplex folding in human cells

Nature Communications(2023)10.1038/s41467-023-35811-x

N/A

0DataRank · unranked

136 citations

Marta M. Fay, Ekaterina V. Manasova, Paul Anderson, Alexander V. Kurkin, Junjie U. Guo +2 more

A standardized ontology for naming tRNA-derived RNAs based on molecular origin

Nature Methods(2023)10.1038/s41592-023-01813-2

N/A

0DataRank · unranked

90 citations

Patricia P. Chan, Qi Chen, Pavel Ivanov, Laurence Drouard, Norbert Polacek +3 more

Nicked tRNAs are stable reservoirs of tRNA halves in cells and biofluids

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2216330120

N/A

0DataRank · unranked

66 citations

Marco Li Calzi, Mauricio Castellano, Valentina Blanco, Ernesto Cuevasanta, Irene Litvan +5 more

tRNA‐derived RNAs: Biogenesis and roles in translational control

Wiley Interdisciplinary Reviews - RNA(2023)10.1002/wrna.1805

N/A

0DataRank · unranked

30 citations

Pavel Ivanov, Yasutoshi Akiyama

Oxidative Stress, Transfer RNA Metabolism, and Protein Synthesis

Antioxidants and Redox Signaling(2023)10.1089/ars.2022.0206

N/A

0DataRank · unranked

28 citations

Pavel Ivanov, Yasutoshi Akiyama

Cell death or survival: Insights into the role of mRNA translational control

Seminars in Cell and Developmental Biology(2023)10.1016/j.semcdb.2023.06.006

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0DataRank · unranked

27 citations

Sergey E. Dmitriev, Pavel Ivanov, Nupur Bhatter

Identification of bona fide RNA G-quadruplex binding proteins

Methods in enzymology on CD-ROM/Methods in enzymology(2023)10.1016/bs.mie.2023.12.001

N/A

0DataRank · unranked

5 citations

Pavel Ivanov, Prakash Kharel

RNA G-quadruplexes and stress: emerging mechanisms and functions

Trends in Cell Biology(2024)10.1016/j.tcb.2024.01.005

N/A

0DataRank · unranked

52 citations

Pavel Ivanov, Prakash Kharel

Calcium signaling from damaged lysosomes induces cytoprotective stress granules

The EMBO Journal(2024)10.1038/s44318-024-00292-1

N/A

0DataRank · unranked

26 citations

Jay E Salinas, Rui Ping Wheaton, Suttinee Poolsup, Lee Allers, Mónica Rosas‐Lemus +12 more

HOXDeRNA activates a cancerous transcription program and super enhancers via genome-wide binding

Molecular Cell(2024)10.1016/j.molcel.2024.09.018

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0DataRank · unranked

18 citations

Prakash Kharel, Yanhong Zhang, Anton Karelin, Abdellatif El Khayari, Pavel Ivanov +2 more

Stress granule-mediated sequestration of EGR1 mRNAs correlates with lomustine-induced cell death prevention

Journal of Cell Science(2024)10.1242/jcs.261825

N/A

0DataRank · unranked

7 citations

Paulina Pietras, Marcin Ruciński, Ryan Johnston, Mateusz Sowiński, Małgorzata Andrzejewska +6 more

PKM2-G-quadruplex interactions conspire to regulate the cancer transcriptome

Molecular Cell(2024)10.1016/j.molcel.2024.09.013

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0DataRank · unranked

2 citations

Pavel Ivanov, Prakash Kharel

A general framework to analyze potential roles of tDRs in mammalian protein synthesis

Methods in enzymology on CD-ROM/Methods in enzymology(2024)10.1016/bs.mie.2024.11.018

N/A

0DataRank · unranked

0 citations

Pavel Ivanov, Nupur Bhatter

G-quadruplex topologies determine the functional outcome of guanine-rich bioactive oligonucleotides

Nucleic Acids Research(2025)10.1093/nar/gkaf590

N/A

0DataRank · unranked

4 citations

Nupur Bhatter, Safiyah Noor Zubair, Shawn M. Lyons, Paul Anderson, Pavel Ivanov +1 more

Editorial: Survival strategies: cellular responses to stress and damage

Frontiers in Cell and Developmental Biology(2025)10.3389/fcell.2025.1630652

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0DataRank · unranked

1 citations

Aurore Claude‐Taupin, Pavel Ivanov, Jingyue Jia, Jing Pu, Bhawana Bissa

Processing bodies promote lysosomal quality control and cell survival during recovery from lysosomal damage

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.08.27.672666

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0DataRank · unranked

1 citations

Jacob Duran, Li Chen, Jing Pu, Pavel Ivanov, Jingyue Jia

Correction: Editorial: Survival strategies: cellular responses to stress and damage

Frontiers in Cell and Developmental Biology(2025)10.3389/fcell.2025.1665855

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0DataRank · unranked

0 citations

Aurore Claude‐Taupin, Pavel Ivanov, Jingyue Jia, Jing Pu, Bhawana Bissa

Processing bodies promote lysosomal quality control and cell survival during recovery from lysosomal damage

Research Square(2025)10.21203/rs.3.rs-7474186/v1

N/A

0DataRank · unranked

0 citations

Jacob Duran, Li Chen, Jing Pu, Pavel Ivanov, Jingyue Jia

Differentiation stage-specific use of cap-independent and cap-dependent translation initiation in hematopoiesis

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.24.678136

N/A

0DataRank · unranked

0 citations

Ting Zhao, Anna Kiem, Trine Kristiansen, Karin Gustafsson, Lai Ping Wong +20 more

Properties and biological impact of RNA G-quadruplexes: from order to turmoil and back

Nucleic Acids Research(2020)10.1093/nar/gkaa1126

N/A

0DataRank · unranked

165 citations

Gertraud Becker, В.Б. Цветков, Pavel Ivanov, Prakash Kharel