Josh T. Cuperus

Also affiliated with Brotman Baty Institute

Agricultural and Biological SciencesBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 27 papers. Top paper: “Effects of sequence motifs in the yeast 3′ untranslated region determined from massively parallel assays of random sequences”.

Effects of sequence motifs in the yeast 3′ untranslated region determined from massively parallel assays of random sequences

Genome biology(2021)10.1186/s13059-021-02509-6

N/A

0.586DataRank · unranked

17 citations

Benjamin M. Brandsen, Brooke E. Angell, Josh T. Cuperus, Stanley Fields, Andrew Savinov

The regulatory potential of transposable elements in maize

Nature Plants(2025)10.1038/s41477-025-02002-z

N/A

0.525DataRank · unranked

17 citations

Morgan O. Hamm, Thomas W. Tullius, Joseph Min, Bryan Ramirez-Corona, Nicholas A. Mueth +9 more

Small DNA elements can act as both insulators and silencers in plants

The Plant Cell(2025)10.1093/plcell/koaf084

N/A

0.369DataRank · unranked

10 citations

Nicholas A. Mueth, Jackson Tonnies, Si Nian Char, Bo Liu, Valentina Grillo-Alvarado +14 more

LTP2 hypomorphs show genotype‐by‐environment interaction in early seedling traits in Arabidopsis thaliana

New Phytologist(2023)10.1111/nph.19334

N/A

0.215DataRank · unranked

3 citations

Kerry L. Bubb, Karla Schultz, Janne Lempe, Josh T. Cuperus, Christine Queitsch +1 more

Companion cells with high florigen production express other small proteins and reveal a nitrogen-sensitive FT repressor

eLife(2025)10.7554/elife.102529

N/A

0.174DataRank · unranked

2 citations

Shogo Ito, Jae Sung Shim, Akane Kubota, Andrew K Hempton, Nayoung Lee +15 more

Synthetic Promoter Designs Enabled by a Comprehensive Analysis of Plant Core Promoters

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.01.07.425784

N/A

0DataRank · unranked

12 citations

Jackson Tonnies, Travis Wrightsman, Edward S. Buckler, Josh T. Cuperus, Stanley Fields +2 more

Effects of sequence motifs in the yeast 3′ untranslated region determined from massively-parallel assays of random sequences

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.03.27.437361

N/A

0DataRank · unranked

1 citations

Benjamin M. Brandsen, Brooke E. Angell, Josh T. Cuperus, Stanley Fields, Andrew Savinov

AGO1 and HSP90 buffer different genetic variants in Arabidopsis thaliana

Genetics(2022)10.1093/genetics/iyac163

N/A

0DataRank · unranked

17 citations

G. Alex Mason, Kerry L. Bubb, Cristina M Alexandre, Christine Queitsch, Josh T. Cuperus +1 more

Ribosomal DNA replication time coordinates completion of genome replication and anaphase in yeast

Cell Reports(2023)10.1016/j.celrep.2023.112161

N/A

0DataRank · unranked

17 citations

Gina M. Alvino, Kelsey L. Lynch, Paula F. Levan, Haley M. Amemiya, Xiaobin S. Wang +12 more

Substantial rDNA copy number reductions alter timing of development and produce variable tissue-specific phenotypes in C. elegans

Genetics(2023)10.1093/genetics/iyad039

N/A

0DataRank · unranked

17 citations

Ashley N. Hall, Josh T. Cuperus, Christine Queitsch, Elizabeth A. Morton

Impact on splicing inSaccharomyces cerevisiaeof random 50-base sequences inserted into an intron

RNA(2023)10.1261/rna.079752.123

N/A

0DataRank · unranked

4 citations

Alexander Sasse, Sara Mostafavi, Stanley Fields, Josh T. Cuperus, Molly Perchlik

De novo designed Hsp70 activator dissolves intracellular condensates

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.18.558356

N/A

0DataRank · unranked

3 citations

Nathan Greenwood, Jason Hernandez, Josh T. Cuperus, Buwei Huang, Bryan D. Ryder +4 more

Impact of random 50-base sequences inserted into an intron on splicing in Saccharomyces cerevisiae

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.21.545966

N/A

0DataRank · unranked

0 citations

Alexander Sasse, Sara Mostafavi, Stanley Fields, Josh T. Cuperus, Molly Perchlik

Plant enhancers exhibit both cooperative and additive interactions among their functional elements

The Plant Cell(2024)10.1093/plcell/koae088

N/A

0DataRank · unranked

37 citations

Jackson Tonnies, Nicholas A. Mueth, Andrés Romanowski, Stanley Fields, Josh T. Cuperus +2 more

Arabidopsis and maize terminator strength is determined by GC content, polyadenylation motifs and cleavage probability

Nature Communications(2024)10.1038/s41467-024-50174-7

N/A

0DataRank · unranked

30 citations

Tobias Jores, Jackson Tonnies, Nicholas A. Mueth, Kerry L. Bubb, Travis Wrightsman +5 more

Florigen-producing cells express FPF1-LIKE PROTEIN 1 that accelerates flowering and stem growth in long days with sunlight red/far-red ratio in Arabidopsis

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.04.26.591289

N/A

0DataRank · unranked

4 citations

Nayoung Lee, Andrew K Hempton, Savita Purushwani, Michitaka Notaguchi, Kota Yamauchi +21 more

Small DNA elements that act as both insulators and silencers in plants

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.13.612883

N/A

0DataRank · unranked

3 citations

Nicholas A. Mueth, Jackson Tonnies, S Char, Bo Liu, Valentina Grillo-Alvarado +14 more

Companion cells with high florigen production express other small proteins and reveal a nitrogen-sensitive FT repressor

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.08.17.608367

N/A

0DataRank · unranked

0 citations

Shogo Ito, Jae Sung Shim, Akane Kubota, Andrew K Hempton, Nayoung Lee +15 more

Florigen-producing cells express FPF1-LIKE PROTEIN 1 to accelerate flowering and stem growth in Arabidopsis

Developmental Cell(2025)10.1016/j.devcel.2025.02.003

N/A

0DataRank · unranked

20 citations

Nayoung Lee, Andrew K Hempton, Savita Purushwani, Michitaka Notaguchi, Kota Yamauchi +22 more

De novo designed Hsp70 activator dissolves intracellular condensates

Cell chemical biology(2025)10.1016/j.chembiol.2025.01.006

N/A

0DataRank · unranked

19 citations

Nathan Greenwood, Jason Hernandez, Josh T. Cuperus, Buwei Huang, Bryan D. Ryder +4 more

Phenotypic tolerance for rDNA copy number variation within the natural range of C. elegans

PLoS Genetics(2025)10.1371/journal.pgen.1011759

N/A

0DataRank · unranked

1 citations

Elizabeth A. Morton, R.A. Walters, Josh T. Cuperus, Christine Queitsch, Ashley N. Hall

The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.07.17.204792

N/A

0DataRank · unranked

18 citations

Cristina M Alexandre, Morgan O. Hamm, Anna-Lena B.G. Vigil, Stanley Fields, Christine Queitsch +2 more

Dosa: A method to covalently barcode proteins for high throughput biochemistry

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.09.21.677650

N/A

0DataRank · unranked

2 citations

Kerry L. Bubb, Curran Oi, Sayeh Gorjifard, Josh T. Cuperus, Christine Queitsch +2 more

Synthetic promoter designs enabled by a comprehensive analysis of plant core promoters

Nature Plants(2021)10.1038/s41477-021-00932-y

N/A

0DataRank · unranked

217 citations

Jackson Tonnies, Travis Wrightsman, Edward S. Buckler, Josh T. Cuperus, Stanley Fields +2 more

The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution

Nature Communications(2021)10.1038/s41467-021-23675-y

N/A

0DataRank · unranked

183 citations

Cristina M Alexandre, Morgan O. Hamm, Anna-Lena B.G. Vigil, Stanley Fields, Christine Queitsch +2 more

A single-cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana

The Plant Cell(2021)10.1093/plcell/koab101

N/A

0DataRank · unranked

128 citations

Amy Lanctot, Ken Jean-Baptiste, Sarah Guiziou, Jonah C. Chu, Joseph E. Zemke +5 more

Single-cell genomics in plants: current state, future directions, and hurdles to overcome

PLANT PHYSIOLOGY(2021)10.1093/plphys/kiab478

N/A

0DataRank · unranked

66 citations

Josh T. Cuperus