🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Amber Shen

Broad Institute

ORCID: 0000-0002-8050-0851
Biochemistry, Genetics and Molecular BiologyImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile
0.898Author DataRank

Indexed papers

1in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 1 indexed paper attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.07.574538
Top 22%
0.898DataRank
Top 22%34 citations

Orr Ashenberg, Natalie B. Collins, Åsa Segerstolpe, Sizun Jiang, Michal Slyper +53 more

Papers

Driven by 7 papers — median percentile 78. Top paper: “Leveraging single-cell ATAC-seq and RNA-seq to identify disease-critical fetal and adult brain cell types”.

Leveraging single-cell ATAC-seq and RNA-seq to identify disease-critical fetal and adult brain cell types

Nature Communications(2024)10.1038/s41467-024-44742-0
N/A
1.1DataRank · unranked
44 citations

Buu Truong, Kushal K. Dey, Soumya Raychaudhuri, Sharon L. R. Kardia, Alkes L. Price +3 more

A spatial cell atlas of neuroblastoma reveals developmental, epigenetic and spatial axis of tumor heterogeneity

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.01.07.574538
Top 22%
0.898DataRank
Top 22%34 citations

Orr Ashenberg, Natalie B. Collins, Åsa Segerstolpe, Sizun Jiang, Michal Slyper +53 more

Leveraging single-cell ATAC-seq to identify disease-critical fetal and adult brain cell types

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.20.445067
N/A
0.646DataRank · unranked
11 citations

Kushal K. Dey, Soumya Raychaudhuri, Sharon L. R. Kardia, Alkes L. Price, Karthik A. Jagadeesh +2 more

Machine learning-based analysis of microfluidic device immobilized C. elegans for automated developmental toxicity testing

Scientific Reports(2025)10.1038/s41598-024-84842-x
N/A
0DataRank · unranked
17 citations

Abhishri Medewar, Evan Hegarty, Adam G. Laing, Amber Shen, Sebastián Gómez +3 more

Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution

Nature Genetics(2023)10.1038/s41588-023-01586-6
N/A
0DataRank · unranked
43 citations

Amber Shen, Saisriram Gurajala, Aparna Nathan, Laurie Rumker, Vitor R. C. Aguiar +95 more

Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution

medRxiv(2023)10.1101/2023.03.14.23287257
N/A
0DataRank · unranked
10 citations

Amber Shen, Saori Sakaue, Yang Luo, Saisriram Gurajala, Aparna Nathan +23 more

vivoBodySeg: Machine learning-based analysis of C. elegans immobilized in vivoChip for automated developmental toxicity testing

Research Square(2024)10.21203/rs.3.rs-4796642/v1
N/A
0DataRank · unranked
0 citations

Abhishri Medewar, Evan Hegarty, Adam G. Laing, Amber Shen, Sebastián Gómez +3 more