Patrick D. McGillivray

Biochemistry, Genetics and Molecular BiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

42.4Author DataRank

Indexed papers

8in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 8 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Comprehensive genomic characterization of squamous cell lung cancers

Nature(2012)10.1038/nature11404

Top 1%

11.0DataRank

Top 1%4036 citations

Gad Getz, Stephen E. Schumacher, Petar Stojanov, Chang‐Jiun Wu, Hailei Zhang +326 more

Papers

Driven by 39 papers — median percentile 96. Top paper: “Comprehensive genomic characterization of squamous cell lung cancers”.

Comprehensive genomic characterization of squamous cell lung cancers

Nature(2012)10.1038/nature11404

Top 1%

11.0DataRank

Top 1%4036 citations

Gad Getz, Stephen E. Schumacher, Petar Stojanov, Chang‐Jiun Wu, Hailei Zhang +326 more

Nuclear factor I/B is an oncogene in small cell lung cancer

Genes & Development(2011)10.1101/gad.2046711

N/A

8.2DataRank · unranked

178 citations

Monte M. Winslow, Derek Y. Chiang, Shantanu Banerji, Nicolas Stransky, Talya L. Dayton +10 more

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

Cell(2018)10.1016/j.cell.2018.02.052

Top 2%

8.1DataRank

Top 2%3980 citations

Katherine A. Hoadley, Laila M. Poisson, Alexander J. Lazar, Andrew D. Cherniack, Albert J. Kovatich +866 more

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics

Cell(2018)10.1016/j.cell.2018.03.033

Top 3%

6.4DataRank

Top 3%447 citations

Matthew H. Bailey, Hoifung Poon, Vesteinn Thorsson, Antonio Colaprico, Andreas Bender +883 more

Pan-cancer analysis of whole genomes

Nature(2020)10.1038/s41586-020-1969-6

Top 3%

5.9DataRank

Top 3%3307 citations

Lauri A. Aaltonen, Federico Abascal, Adam Abeshouse, Hiroyuki Aburatani, David J. Adams +1244 more

Machine Learning Detects Pan-cancer Ras Pathway Activation in The Cancer Genome Atlas

Cell Reports(2018)10.1016/j.celrep.2018.03.046

N/A

5.5DataRank · unranked

186 citations

Francisco Sanchez-Vega, Konnor C. La, Joshua Armenia, Walid K. Chatila, Augustin Luna +869 more

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes

Nature(2020)10.1038/s41586-020-1965-x

Top 5%

4.6DataRank

Top 5%668 citations

Federico Abascal, Jeremiah A. Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj +1240 more

An integrative ENCODE resource for cancer genomics

Nature Communications(2020)10.1038/s41467-020-14743-w

Top 5%

4.1DataRank

Top 5%190 citations

Donghoon Lee, Vineet K. Dhiman, Peng Jiang, Jie Xu, Patrick D. McGillivray +53 more

Pathway and network analysis of more than 2500 whole cancer genomes

Nature Communications(2020)10.1038/s41467-020-14367-0

Top 9%

2.3DataRank

Top 9%117 citations

David Haan, Marta Paczkowska, Lieven P. C. Verbeke, Miguél Vázquez, Abdullah Kahraman +95 more

Estimation of the carrier frequency of fumarate hydratase alterations and implications for kidney cancer risk in hereditary leiomyomatosis and renal cancer

Cancer(2020)10.1002/cncr.32914

N/A

2.1DataRank · unranked

44 citations

Shantao Li, Harvey A. Risch, Ranjit S. Bindra, Patrick D. McGillivray, Mark Gerstein +1 more

Identifying and correcting repeat-calling errors in nanopore sequencing of telomeres

Genome Biology(2022)10.1186/s13059-022-02751-6

N/A

1.8DataRank · unranked

72 citations

Michael K. Slevin, Patrick D. McGillivray, Alexandra P. Lewis, Kar‐Tong Tan, Kar-Tong Tan

EGFR Mutations in Lung Cancer: Correlation with Clinical Response to Gefitinib Therapy

Science(2004)10.1126/science.1099314

N/A

1.4DataRank · unranked

9384 citations

Pasi A. Jänne, Jeffrey C. Lee, Sean Tracy, Heidi Greulich, Anthony Philippakis +13 more

Integrated genomic analyses of ovarian carcinoma

Nature(2011)10.1038/nature10166

N/A

1.3DataRank · unranked

8094 citations

Debra Bell, Andrew Berchuck, Michael J. Birrer, Jeremy Chien, D. W. Cramer +268 more

Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA, IDH1, EGFR, and NF1

Cancer Cell(2010)10.1016/j.ccr.2009.12.020

N/A

1.3DataRank · unranked

7682 citations

Katherine A. Hoadley, Elizabeth Purdom, Victoria Wang, Yuan Qi, Matthew D. Wilkerson +31 more

The landscape of somatic copy-number alteration across human cancers

Nature(2010)10.1038/nature08822

N/A

1.2DataRank · unranked

4101 citations

Craig H. Mermel, Dale A. Porter, Guo Wei, Soumya Raychaudhuri, Jerry Donovan +61 more

GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers

Genome Biology(2011)10.1186/gb-2011-12-4-r41

N/A

1.2DataRank · unranked

3833 citations

Steven E. Schumacher, Barbara Hill, Rameen Beroukhim, Gad Getz, Patrick D. McGillivray +1 more

Oncogenic Signaling Pathways in The Cancer Genome Atlas

Cell(2018)10.1016/j.cell.2018.03.035

N/A

1.2DataRank · unranked

3322 citations

Marco Mina, Joshua Armenia, Walid K. Chatila, Augustin Luna, Konnor C. La +891 more

Classification of human lung carcinomas by mRNA expression profiling reveals distinct adenocarcinoma subclasses

Proceedings of the National Academy of Sciences(2001)10.1073/pnas.191502998

N/A

1.2DataRank · unranked

2583 citations

William G. Richards, Jane Staunton, Cheng Li, Stefano Monti, Priya Vasa +16 more

The Mutational Landscape of Head and Neck Squamous Cell Carcinoma

Science(2011)10.1126/science.1208130

N/A

1.2DataRank · unranked

2533 citations

Ann Marie Egloff, Aaron D. Tward, Aleksandar D. Kostic, Kristian Cibulskis, Sachet A. Shukla +38 more

Initial genome sequencing and analysis of multiple myeloma

Nature(2011)10.1038/nature09837

N/A

1.1DataRank · unranked

1438 citations

Michael S. Lawrence, Jonathan J. Keats, Kristian Cibulskis, Carrie Sougnez, Anna C. Schinzel +51 more

The genomic complexity of primary human prostate cancer

Nature(2011)10.1038/nature09744

N/A

1.1DataRank · unranked

1250 citations

Michael S. Lawrence, Francesca Demichelis, Timothy R. Dreszer, Kristian Cibulskis, Sachet A. Shukla +36 more

Assessing the significance of chromosomal aberrations in cancer: Methodology and application to glioma

Proceedings of the National Academy of Sciences(2007)10.1073/pnas.0710052104

N/A

1.0DataRank · unranked

1085 citations

Gad Getz, Leia Nghiemphu, Jordi Barretina, Teli Hsueh, David Linhart +31 more

SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas

Nature Genetics(2009)10.1038/ng.465

N/A

1.0DataRank · unranked

949 citations

Hideo Watanabe, Craig H. Mermel, Soyoung Yu, Sven Perner, So Young Kim +48 more

Integrated Genome-Wide DNA Copy Number and Expression Analysis Identifies Distinct Mechanisms of Primary Chemoresistance in Ovarian Carcinomas

Clinical Cancer Research(2009)10.1158/1078-0432.ccr-08-1564

N/A

0.858DataRank · unranked

303 citations

Anna deFazio, Rameen Beroukhim, Joshy George, Gad Getz, Richard Tothill +26 more

Genomic sequencing of colorectal adenocarcinomas identifies a recurrent VTI1A-TCF7L2 fusion

Nature Genetics(2011)10.1038/ng.936

N/A

0.838DataRank · unranked

266 citations

Michael S. Lawrence, Lear E. Brace, Alex H. Ramos, Timothy R. Dreszer, Kristian Cibulskis +37 more

Identifying and correcting repeat-calling errors in nanopore sequencing of telomeres

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.01.11.475254

N/A

0.583DataRank · unranked

10 citations

Michael K. Slevin, Patrick D. McGillivray, Alexandra P. Lewis, Kar‐Tong Tan

Neotelomeres and telomere-spanning chromosomal arm fusions in cancer genomes revealed by long-read sequencing

Cell Genomics(2024)10.1016/j.xgen.2024.100588

N/A

0.576DataRank · unranked

16 citations

Michael K. Slevin, Mitchell L. Leibowitz, Max Garrity-Janger, Jidong Shan, Alexandra P. Lewis +2 more

Haplotype-resolved germline and somatic alterations in renal medullary carcinomas

Genome Medicine(2021)10.1186/s13073-021-00929-4

N/A

0.560DataRank · unranked

12 citations

Hyunji Kim, Yuxiang Zhang, Won Jun Kim, Guillaume Kugener, Jeremiah A. Wala +15 more

Distinguishing Benign Renal Tumors with an Oncocytic Gene Expression (ONEX) Classifier

European Urology(2020)10.1016/j.eururo.2020.09.017

N/A

0.494DataRank · unranked

26 citations

Daiki Ueno, Aydin Pooli, Neil Mendhiratta, Jamil Syed, Kevin A. Nguyen +6 more

Analytical protocol to identify local ancestry-associated molecular features in cancer

STAR Protocols(2021)10.1016/j.xpro.2021.100766

N/A

0.400DataRank · unranked

9 citations

Seunghun Han, Liangtao Zheng, Jeffrey S. Damrauer, Anab Kemal, Ashton C. Berger +35 more

Neotelomeres and Telomere-Spanning Chromosomal Arm Fusions in Cancer Genomes Revealed by Long-Read Sequencing

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.11.30.569101

N/A

0.343DataRank · unranked

4 citations

Michael K. Slevin, Mitchell L. Leibowitz, Max Garrity-Janger, Alexandra P. Lewis, Patrick D. McGillivray +1 more

NIMBus: a negative binomial regression based Integrative Method for mutation Burden Analysis

BMC Bioinformatics(2020)10.1186/s12859-020-03758-1

N/A

0.269DataRank · unranked

5 citations

Jason Liu, Patrick D. McGillivray, Caroline Yi, Lucas Lochovsky, Donghoon Lee +2 more

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

Communications Biology(2022)10.1038/s42003-022-03769-z

N/A

0.165DataRank · unranked

2 citations

Lars Feuerbach, Chen Hong, David Mas-Ponte, Randi Istrup Pedersen, PCAWG Drivers and Functional Interpretation Group +1255 more

Analysis of germline-driven ancestry-associated gene expression in cancers

STAR Protocols(2022)10.1016/j.xpro.2022.101586

N/A

0.165DataRank · unranked

2 citations

Rosalyn W. Sayaman, Donglei Hu, Scott Huntsman, Ashton C. Berger, Seunghun Han +37 more

Passenger Mutations in More Than 2,500 Cancer Genomes: Overall Molecular Functional Impact and Consequences

Cell(2020)10.1016/j.cell.2020.01.032

N/A

0DataRank · unranked

169 citations

Jonathan Warrell, Shantao Li, Patrick D. McGillivray, Matthew Meyerson, Leonidas Salichos +14 more

Additional file 2 of Identifying and correcting repeat-calling errors in nanopore sequencing of telomeres

Open MIND(2022)10.6084/m9.figshare.20677928

Top 100%

0DataRank

Top 100%0 citations

Michael K. Slevin, Patrick D. McGillivray, Alexandra P. Lewis, Kar‐Tong Tan

Author Correction: Combined burden and functional impact tests for cancer driver discovery using DriverPower

Nature Communications(2022)10.1038/s41467-022-32343-8

N/A

0DataRank · unranked

0 citations

PCAWG Drivers and Functional Interpretation Working Group, Federico Abascal, Samirkumar B. Amin, Pratiti Bandopadhayay, Rameen Beroukhim +1242 more

NIMBus: a Negative Binomial Regression based Integrative Method for Mutation Burden Analysis

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.29.124149

N/A

0DataRank · unranked

0 citations

Jason Liu, Patrick D. McGillivray, Caroline Yi, Lucas Lochovsky, Donghoon Lee +2 more

Data from Genomic Heterogeneity and the Small Renal Mass

(2023)10.1158/1078-0432.c.6527436.v1

N/A

0DataRank · unranked

0 citations

Zuoquan Xie, Marta Boeke, Jamil Syed, Kevin Nguyen, Patrick D. McGillivray +8 more

Patrick D. McGillivray

Indexed papers

Top data-sharing exemplar

Papers