Keith R. Jerome

Also affiliated with Fred Hutch Cancer Center

Medicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 115 papers. Top paper: “Detection of SARS-CoV-2 with SHERLOCK One-Pot Testing”.

Detection of SARS-CoV-2 with SHERLOCK One-Pot Testing

New England Journal of Medicine(2020)10.1056/nejmc2026172

N/A

14.8DataRank · unranked

809 citations

Alim Ladha, Makoto Saito, Nam-Gyun Kim, Ann E. Woolley, Michael Segel +18 more

Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California

Science(2020)10.1126/science.abb9263

N/A

13.4DataRank · unranked

308 citations

Wei Gu, Scot Federman, Louis du Plessis, Oliver Pybus, Nuno R. Faria +45 more

Hydroxychloroquine with or without azithromycin for treatment of early SARS-CoV-2 infection among high-risk outpatient adults: A randomized clinical trial

EClinicalMedicine(2021)10.1016/j.eclinm.2021.100773

N/A

2.8DataRank · unranked

65 citations

Elizabeth R. Brown, Jenell Stewart, Helen C. Stankiewicz Karita, Patricia Kissinger, John Dwyer +25 more

Efficacy, safety, and immunogenicity of a booster regimen of Ad26.COV2.S vaccine against COVID-19 (ENSEMBLE2): results of a randomised, double-blind, placebo-controlled, phase 3 trial

The Lancet Infectious Diseases(2022)10.1016/s1473-3099(22)00506-0

N/A

2.0DataRank · unranked

89 citations

An Vandebosch, Jerald Sadoff, Mathieu Le Gars, Carla Truyers, D. Lowson +95 more

Viral Resistance Analyses From the Remdesivir Phase 3 Adaptive COVID-19 Treatment Trial-1 (ACTT-1)

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad270

N/A

0.990DataRank · unranked

34 citations

Lauren Rodriguez, Pavitra Roychoudhury, Meei‐Li Huang, Keith R. Jerome, Linhui Hao +9 more

HHV-6B detection and host gene expression implicate HHV-6B as pulmonary pathogen after hematopoietic cell transplant

Nature Communications(2024)10.1038/s41467-024-44828-9

N/A

0.613DataRank · unranked

17 citations

Yeon Joo Lee, Lisa K. Vande Vusse, Hu Xie, E Chung, Alpana Waghmare +11 more

Viral gene drive spread during herpes simplex virus 1 infection in mice

Nature Communications(2024)10.1038/s41467-024-52395-2

N/A

0.531DataRank · unranked

12 citations

Anoria K. Haick, Rebeccah Riley, Paola A Massa, Daniel E. Strongin, Lindsay M. Klouser +9 more

SARS-CoV-2 RNA and Nucleocapsid Antigen Are Blood Biomarkers Associated With Severe Disease Outcomes That Improve in Response to Remdesivir

The Journal of Infectious Diseases(2024)10.1093/infdis/jiae198

N/A

0.439DataRank · unranked

13 citations

Kevin Rubenstein, Viviane Callier, Katy Shaw-Saliba, Adam Rupert, Robin Dewar +94 more

Urethral Microbiota in Men: Association of Haemophilus influenzae and Mycoplasma penetrans With Nongonococcal Urethritis

Clinical Infectious Diseases(2020)10.1093/cid/ciaa1123

N/A

0DataRank · unranked

64 citations

Laura C. Chambers, Kenneth Tapia, Noah G. Hoffman, Matthew M Munch, Jennifer L. L. Morgan +11 more

CMV viral load kinetics as surrogate endpoints after allogeneic transplantation

Journal of Clinical Investigation(2020)10.1172/jci133960

N/A

0DataRank · unranked

55 citations

Brian D. Williamson, Bhavesh Borate, Jonathan L. Golob, Chiara Wychera, Terry Stevens‐Ayers +12 more

Low Prevalence of Severe Acute Respiratory Syndrome Coronavirus 2 Among Pregnant and Postpartum Patients With Universal Screening in Seattle, Washington

Clinical Infectious Diseases(2020)10.1093/cid/ciaa675

N/A

0DataRank · unranked

43 citations

Alisa Kachikis, Michela Blain, LaVone E. Simmons, James A. Mays, Amber D Pattison +26 more

RETRACTED: Robust expansion of HIV CAR T cells following antigen boosting in ART-suppressed nonhuman primates

Blood(2020)10.1182/blood.2020006372

N/A

0DataRank · unranked

59 citations

Leslie S. Kean, Lucrezia Colonna, Katherine E. Brandenstein, Nikhita H. Poole, Willimark Obenza +11 more

Presentation of BK polyomavirus–associated hemorrhagic cystitis after allogeneic hematopoietic cell transplantation

Blood Advances(2020)10.1182/bloodadvances.2019000802

N/A

0DataRank · unranked

58 citations

Hu Xie, Wendy M. Leisenring, Elizabeth R. Duke, Louise E. Kimball, Meei‐Li Huang +10 more

Incidence of Health Care–Associated COVID-19 During Universal Testing of Medical and Surgical Admissions in a Large US Health System

Open Forum Infectious Diseases(2020)10.1093/ofid/ofaa435

N/A

0DataRank · unranked

9 citations

Vikas N. O’Reilly-Shah, Alison S Rustagi, Chloe Bryson‐Cahn, Keith R. Jerome, Noel S. Weiss +2 more

Reliability of Self-Sampling for Accurate Assessment of Respiratory Virus Viral and Immunologic Kinetics

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa451

N/A

0DataRank · unranked

18 citations

Elizabeth M. Krantz, Subhasish Baral, Emma Vasquez, Tillie Loeffelholz, E Chung +11 more

Role of Human Bocavirus Respiratory Tract Infection in Hematopoietic Cell Transplant Recipients

Clinical Infectious Diseases(2020)10.1093/cid/ciaa1149

N/A

0DataRank · unranked

14 citations

Emily T. Martin, Hu Xie, Angela P. Campbell, Alpana Waghmare, Keith R. Jerome +5 more

Detection of SARS-CoV-2 by bronchoscopy after negative nasopharyngeal testing: Stay vigilant for COVID-19

Respiratory Medicine Case Reports(2020)10.1016/j.rmcr.2020.101120

N/A

0DataRank · unranked

30 citations

Siddhartha G. Kapnadak, Bridget F. Collins, Paul S. Pottinger, Richard J. Wall, James A. Mays +7 more

Donor-Derived CD4+ T Cells and Human Herpesvirus 6B Detection After Allogeneic Hematopoietic Cell Transplantation

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa422

N/A

0DataRank · unranked

7 citations

Hu Xie, Danielle M. Zerr, Wendy M. Leisenring, Keith R. Jerome, Meei‐Li Huang +5 more

Occurrence and Timing of Subsequent SARS-CoV-2 RT-PCR Positivity Among Initially Negative Patients

medRxiv(2020)10.1101/2020.05.03.20089151

N/A

0DataRank · unranked

51 citations

Saurabh Gombar, Catherine A. Hogan, Alexander L. Greninger, Vikas N. O’Reilly-Shah, Chloe Bryson‐Cahn +10 more

LB-17. Efficacy of Hydroxychloroquine (HCQ) for Post-exposure Prophylaxis to Prevent Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection: A Blinded, Randomized, Controlled Trial

Open Forum Infectious Diseases(2020)10.1093/ofid/ofaa515.1914

N/A

0DataRank · unranked

1 citations

Anna Bershteyn, Helen C. Stankiewicz Karita, Christine Johnston, Lorna E. Thorpe, Angelica C Kottkamp +23 more

Point-of-care testing for COVID-19 using SHERLOCK diagnostics

medRxiv(2020)10.1101/2020.05.04.20091231

N/A

0DataRank · unranked

337 citations

Alim Ladha, Makoto Saito, Michael Segel, Robert Bruneau, Mee-li W. Huang +10 more

Neutralizing antibodies correlate with protection from SARS-CoV-2 in humans during a fishery vessel outbreak with high attack rate

medRxiv(2020)10.1101/2020.08.13.20173161

N/A

0DataRank · unranked

117 citations

Katharine H. D. Crawford, Adam S. Dingens, Haiying Zhu, Pavitra Roychoudhury, Meei‐Li Huang +4 more

Cryptic transmission of SARS-CoV-2 in Washington State

medRxiv(2020)10.1101/2020.04.02.20051417

N/A

0DataRank · unranked

86 citations

Alexander L. Greninger, Pavitra Roychoudhury, Lea M. Starita, Michael Famulare, Meei‐Li Huang +52 more

DIRECT RT-qPCR DETECTION OF SARS-CoV-2 RNA FROM PATIENT NASOPHARYNGEAL SWABS WITHOUT AN RNA EXTRACTION STEP

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.20.001008

N/A

0DataRank · unranked

83 citations

Meei‐Li Huang, Garrett A. Perchetti, Scott Tighe, Pheobe Laaguiby, Jessica J. Hoffman +14 more

In vivo antiviral host response to SARS-CoV-2 by viral load, sex, and age

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.06.22.165225

N/A

0DataRank · unranked

48 citations

Vikas Peddu, Hong Xie, Lasata Shrestha, Meei‐Li Huang, Megan C. Mears +10 more

A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage

medRxiv(2020)10.1101/2020.03.27.20044925

N/A

0DataRank · unranked

36 citations

Wei Gu, Scot Federman, Louis du Plessis, Oliver Pybus, Nuno R. Faria +43 more

Clinical, laboratory, and temporal predictors of neutralizing antibodies to SARS-CoV-2 after COVID-19

medRxiv(2020)10.1101/2020.10.06.20207472

N/A

0DataRank · unranked

10 citations

Chihiro Morishima, Stacy Selke, Danniel Zamora, Sarah McGuffin, Adrienne E. Shapiro +19 more

Reliability of self-sampling for accurate assessment of respiratory virus viral and immunologic kinetics

medRxiv(2020)10.1101/2020.04.03.20051706

N/A

0DataRank · unranked

9 citations

Elizabeth M. Krantz, Subhasish Baral, Emma Vasquez, Tillie Loeffelholz, E Chung +11 more

Response of human liver tissue to innate immune stimuli

medRxiv(2020)10.1101/2020.12.22.20248755

N/A

0DataRank · unranked

0 citations

Jessica B. Roberto, Allison Knupp, Alexander L. Greninger, Camtu D. Truong, Nicole Hollingshead +9 more

Lack of viral control and development of combination antiretroviral therapy escape mutations in macaques after bone marrow transplantation

UNC Libraries(2020)10.17615/4jyd-9097

N/A

0DataRank · unranked

0 citations

Ann E. Woolfrey, Patricia Polacino, Angela D. M. Kashuba, Craig Sykes, Huang, Meei Li +10 more

Cytomegalovirus-specific T-cell reconstitution following letermovir prophylaxis after hematopoietic cell transplantation

Blood(2021)10.1182/blood.2020009396

N/A

0DataRank · unranked

163 citations

Elizabeth R. Duke, Hu Xie, Bradley Edmison, Brenda Akoto, Richard Kiener +10 more

SARS-CoV-2 ORF6 Disrupts Bidirectional Nucleocytoplasmic Transport through Interactions with Rae1 and Nup98

mBio(2021)10.1128/mbio.00065-21

N/A

0DataRank · unranked

152 citations

Nicole A. P. Lieberman, Quynh Phung, Tien-Ying Hsiang, Hong Xie, Pavitra Roychoudhury +7 more

A highly multiplexed droplet digital PCR assay to measure the intact HIV-1 proviral reservoir

Cell Reports Medicine(2021)10.1016/j.xcrm.2021.100243

N/A

0DataRank · unranked

107 citations

Sean M. Hughes, Pavitra Roychoudhury, Daniel B. Reeves, Chelsea Amstuz, Haiying Zhu +17 more

Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State

Science Translational Medicine(2021)10.1126/scitranslmed.abf0202

N/A

0DataRank · unranked

80 citations

Cassia Wagner, Chris Frazar, Pavitra Roychoudhury, Jover Lee, Louise H. Moncla +38 more

Hospitalization and mortality associated with SARS-CoV-2 viral clades in COVID-19

Scientific Reports(2021)10.1038/s41598-021-82850-9

N/A

0DataRank · unranked

70 citations

Jolie Shen, Cecilia S. Lee, Aaron Lee, Emma A. Roberts, Paul D. Simonson +8 more

Multiplex CRISPR/Cas9 genome editing in hematopoietic stem cells for fetal hemoglobin reinduction generates chromosomal translocations

Molecular Therapy — Methods & Clinical Development(2021)10.1016/j.omtm.2021.10.008

N/A

0DataRank · unranked

49 citations

Stefan Radtke, Haiying Zhu, Mallory J Llewellyn, Emily Fields, Savannah Cook +5 more

HIV reservoir quantification using cross-subtype multiplex ddPCR

iScience(2021)10.1016/j.isci.2021.103615

N/A

0DataRank · unranked

47 citations

Carolyn S. Fish, Claire Levy, Pavitra Roychoudhury, Daniel B. Reeves, Sean M. Hughes +9 more

Variants of Concern Are Overrepresented Among Postvaccination Breakthrough Infections of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Washington State

Clinical Infectious Diseases(2021)10.1093/cid/ciab581

N/A

0DataRank · unranked

46 citations

Seth A. Cohen, Chloe Bryson‐Cahn, Catherine Liu, Steven A. Pergam, John B. Lynch +16 more

Tissue-Resident-Memory CD8+ T Cells Bridge Innate Immune Responses in Neighboring Epithelial Cells to Control Human Genital Herpes

Frontiers in Immunology(2021)10.3389/fimmu.2021.735643

N/A

0DataRank · unranked

38 citations

Khamsone Phasouk, Catherine Sodroski, Sijie Sun, Yon Hwangbo, Erik D. Layton +17 more

Optimization of AAV vectors to target persistent viral reservoirs

Virology Journal(2021)10.1186/s12985-021-01555-7

N/A

0DataRank · unranked

50 citations

Keith R. Jerome, Daniel Stone, Rossana Colón-Thillet

In silico detection of SARS-CoV-2 specific B-cell epitopes and validation in ELISA for serological diagnosis of COVID-19

Scientific Reports(2021)10.1038/s41598-021-83730-y

N/A

0DataRank · unranked

33 citations

Sandhya Subramanian, David E. Kim, Michael Murphy, Deleah Pettie, Lauren Carter +20 more

Risk factors for seasonal human coronavirus lower respiratory tract infection after hematopoietic cell transplantation

Blood Advances(2021)10.1182/bloodadvances.2020003865

N/A

0DataRank · unranked

15 citations

Hu Xie, Alpana Waghmare, Masumi Ueda, Kanwaldeep Mallhi, Keith R. Jerome +4 more

Association of Inherited Chromosomally Integrated Human Herpesvirus 6 with Neurologic Symptoms and Management after Allogeneic Hematopoietic Cell Transplantation

Transplantation and Cellular Therapy(2021)10.1016/j.jtct.2021.05.029

N/A

0DataRank · unranked

12 citations

Cassandra Job, Joyce Maalouf, Jessica Morris, Hu Xie, Chris Davis +8 more

HIV reservoir quantification by five-target multiplex droplet digital PCR

STAR Protocols(2021)10.1016/j.xpro.2021.100885

N/A

0DataRank · unranked

14 citations

Sean M. Hughes, Pavitra Roychoudhury, Chelsea Amstuz, Haiying Zhu, Meei‐Li Huang +4 more

A Gut Reaction to SIV and SHIV Infection: Lower Dysregulation of Mucosal T Cells during Acute Infection Is Associated with Greater Viral Suppression during cART

Viruses(2021)10.3390/v13081609

N/A

0DataRank · unranked

3 citations

Paul V. Munson, Sandra Dross, Hillary C. Tunggal, Thomas B. Lewis, Jessica M. Osborn +10 more

Quantitative measurement of infectious virus in SARS-CoV-2 Alpha, Delta and Epsilon variants reveals higher infectivity (viral titer:RNA ratio) in clinical samples containing the Delta and Epsilon variants

medRxiv(2021)10.1101/2021.09.07.21263229

N/A

0DataRank · unranked

39 citations

Margaret G. Mills, David J. Shirley, Madaline M. Schmidt, Meei‐Li Huang, Keith R. Jerome +3 more

Variants of concern are overrepresented among post-vaccination breakthrough infections of SARS-CoV-2 in Washington State

medRxiv(2021)10.1101/2021.05.23.21257679

N/A

0DataRank · unranked

31 citations

Seth A. Cohen, Chloe Bryson‐Cahn, Catherine Liu, Steven A. Pergam, John B. Lynch +16 more

Phylogenetic estimates of SARS-CoV-2 introductions into Washington State

medRxiv(2021)10.1101/2021.04.05.21254924

N/A

0DataRank · unranked

9 citations

Alexander L. Greninger, Pavitra Roychoudhury, Lasata Shrestha, Hong Xie, Keith R. Jerome +5 more

Tracking SARS-CoV-2 Spike Protein Mutations in the United States (2020/01 – 2021/03) Using a Statistical Learning Strategy

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.06.15.448495

N/A

0DataRank · unranked

8 citations

Terry P. Lybrand, Peter B. Gilbert, Thomas R. Hawn, Joshua T. Schiffer, Leonidas Stamatatos +5 more

Predicting Infectivity: Comparing Four PCR-based Assays to Detect Culturable SARS-CoV-2 in Clinical Samples

medRxiv(2021)10.1101/2021.07.14.21260544

N/A

0DataRank · unranked

7 citations

Margaret G. Mills, Reigran Sampoleo, Garrett A. Perchetti, Meei‐Li Huang, Hannah W. Despres +5 more

Host variation in type I interferon signaling genes ( MX1 ), CCR5 Δ 32 , and MHC class I alleles in treated HIV+ non-controllers predict viral reservoir size

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.10.31.466670

N/A

0DataRank · unranked

2 citations

Cassandra Thanh, Eunice Wan, Rebecca Hoh, Kristen S. Hobbs, Tony Pan +22 more

Clinical performance characteristics of the Swift Normalase Amplicon Panel for sensitive recovery of SARS-CoV-2 genomes

medRxiv(2021)10.1101/2021.10.22.21265255

N/A

0DataRank · unranked

1 citations

Michelle J. Lin, Hong Xie, Margaret G. Mills, Shah A. Mohamed Bakhash, Vinod P. Gaur +9 more

An international, interlaboratory ring trial confirms the feasibility of an open-source, extraction-less “direct” RT-qPCR method for reliable detection of SARS-CoV-2 RNA in clinical samples

medRxiv(2021)10.1101/2021.04.10.21254091

N/A

0DataRank · unranked

0 citations

Emily A. Bruce, Meei‐Li Huang, Jessica W. Crothers, Ollivier Hyrien, Christopher Oura +38 more

Variants in nucleocapsid protein and endoRNase are found to associate with severe COVID-19 in a case-control study in Washington State, USA

Research Square(2021)10.21203/rs.3.rs-888049/v1

N/A

0DataRank · unranked

0 citations

Pavitra Roychoudhury, Keith R. Jerome, Peter B. Gilbert, Joshua T. Schiffer, Terry P. Lybrand +13 more

Variants in nucleocapsid protein and endoRNase are found to associate with severe COVID-19 in a case-control study in Washington State, USA

Research Square(2021)10.21203/rs.3.rs-888049/v2

N/A

0DataRank · unranked

0 citations

Pavitra Roychoudhury, Keith R. Jerome, Peter B. Gilbert, Joshua T. Schiffer, Terry P. Lybrand +13 more

SIRT5 is a proviral factor that interacts with SARS-CoV-2 Nsp14 protein

PLoS Pathogens(2022)10.1371/journal.ppat.1010811

N/A

0DataRank · unranked

33 citations

Irene P. Chen, Albert Vallejo-Gracia, Ik-Jung Kim, Olga Bielska, Victor L. Lam +11 more

Novel factors to predict respiratory viral disease progression in allogeneic hematopoietic cell transplant recipients

Bone Marrow Transplantation(2022)10.1038/s41409-022-01575-z

N/A

0DataRank · unranked

24 citations

Hu Xie, Alpana Waghmare, Keith R. Jerome, Wendy M. Leisenring, Masumi Ueda +4 more

Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat

Virus Evolution(2022)10.1093/ve/veac052

N/A

0DataRank · unranked

21 citations

Pavitra Roychoudhury, Hong Xie, Lasata Shrestha, Amin Addetia, Keith R. Jerome +3 more

Mutations in viral nucleocapsid protein and endoRNase are discovered to associate with COVID19 hospitalization risk

Scientific Reports(2022)10.1038/s41598-021-04376-4

N/A

0DataRank · unranked

19 citations

Pavitra Roychoudhury, Peter B. Gilbert, Joshua T. Schiffer, Terry P. Lybrand, Thomas H. Payne +13 more

Clinical Performance Characteristics of the Swift Normalase Amplicon Panel for Sensitive Recovery of Severe Acute Respiratory Syndrome Coronavirus 2 Genomes

Journal of Molecular Diagnostics(2022)10.1016/j.jmoldx.2022.05.007

N/A

0DataRank · unranked

18 citations

Michelle J. Lin, Hong Xie, Margaret G. Mills, Shah A. Mohamed Bakhash, Vinod P. Gaur +9 more

Rapidly identifying new coronavirus mutations of potential concern in the Omicron variant using an unsupervised learning strategy

Scientific Reports(2022)10.1038/s41598-022-23342-2

N/A

0DataRank · unranked

14 citations

Terry P. Lybrand, Peter B. Gilbert, Thomas H. Payne, Chul‐Woo Pyo, Daniel E. Geraghty +2 more

Protocol for high-throughput reservoir quantification across global HIV subtypes using a cross-subtype intact proviral DNA assay

STAR Protocols(2022)10.1016/j.xpro.2022.101681

N/A

0DataRank · unranked

13 citations

Noah A.J. Cassidy, Claire Levy, Sean M. Hughes, Keith R. Jerome, Julie Overbaugh +3 more

Host variation in type I interferon signaling genes (MX1), C–C chemokine receptor type 5 gene, and major histocompatibility complex class I alleles in treated HIV+ noncontrollers predict viral reservoir size

AIDS(2022)10.1097/qad.0000000000003428

N/A

0DataRank · unranked

13 citations

Cassandra Thanh, Eunice Wan, Rebecca Hoh, Kristen S. Hobbs, Tony Pan +20 more

Estimation of the in vivo neutralization potency of eCD4Ig and conditions for AAV-mediated production for SHIV long-term remission

Science Advances(2022)10.1126/sciadv.abj5666

N/A

0DataRank · unranked

9 citations

Matthew R. Gardner, Bryan T. Mayer, Keith R. Jerome, Michael Farzan, Joshua T. Schiffer +2 more

Correlation of initial upper respiratory tract viral burden with progression to lower tract disease in adult allogeneic hematopoietic cell transplant recipients

Journal of Clinical Virology(2022)10.1016/j.jcv.2022.105152

N/A

0DataRank · unranked

13 citations

Hu Xie, Alpana Waghmare, Keith R. Jerome, Wendy M. Leisenring, Filippo Milano +3 more

Exposure to antibiotics with anaerobic activity before respiratory viral infection is associated with respiratory disease progression after hematopoietic cell transplant

Bone Marrow Transplantation(2022)10.1038/s41409-022-01790-8

N/A

0DataRank · unranked

9 citations

Elizabeth M. Krantz, Jonathan L. Golob, Catherine Liu, Alpana Waghmare, Ashley Akramoff +9 more

Host–pathogen dynamics in longitudinal clinical specimens from patients with COVID-19

Scientific Reports(2022)10.1038/s41598-022-09752-2

N/A

0DataRank · unranked

6 citations

Victoria M. Rachleff, Hong Xie, Lasata Shrestha, Nicole A. P. Lieberman, Vikas Peddu +9 more

Herpes simplex virus lymphadenitis is associated with tumor reduction in a patient with chronic lymphocytic leukemia

Journal of Clinical Investigation(2022)10.1172/jci161109

N/A

0DataRank · unranked

6 citations

Anton M. Sholukh, Andreas Wieland, David L. Jaye, Mary Carrington, Meei‐Li Huang +11 more

Detection and Kinetics of Subgenomic Severe Acute Respiratory Syndrome Coronavirus 2 RNA Viral Load in Longitudinal Diagnostic RNA–Positive Samples

The Journal of Infectious Diseases(2022)10.1093/infdis/jiac048

N/A

0DataRank · unranked

6 citations

Tracy Qi Dong, Vaidehi Agrawal, Margaret G. Mills, Meei Li Huang, Alexander L. Greninger +17 more

Response of Human Liver Tissue to Innate Immune Stimuli

Frontiers in Immunology(2022)10.3389/fimmu.2022.811551

N/A

0DataRank · unranked

2 citations

Jessica B. Roberto, Allison Knupp, Alexander L. Greninger, Camtu D. Truong, Nicole Hollingshead +10 more

Using time‐weighted average change from baseline of SARS‐CoV‐2 viral load to assess impact of hydroxychloroquine as postexposure prophylaxis and early treatment for COVID‐19

Journal of Medical Virology(2022)10.1002/jmv.28054

N/A

0DataRank · unranked

1 citations

Moni B. Neradilek, Ruanne V. Barnabas, Jenell Stewart, Helen C. Stankiewicz Karita, Raphael J. Landovitz +12 more

Narrow transmission bottlenecks and limited within-host viral diversity during a SARS-CoV-2 outbreak on a fishing boat

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.09.479546

N/A

0DataRank · unranked

4 citations

Pavitra Roychoudhury, Hong Xie, Lasata Shrestha, Amin Addetia, Keith R. Jerome +3 more

Rapidly Identifying New Coronavirus Mutations of Potential Concern in the Omicron Variant Using an Unsupervised Learning Strategy

Research Square(2022)10.21203/rs.3.rs-1280819/v1

N/A

0DataRank · unranked

3 citations

Terry P. Lybrand, Peter B. Gilbert, Thomas H. Payne, Chul‐Woo Pyo, Daniel E. Geraghty +2 more

AAV-delivered gene editing for latent genital or orofacial herpes simplex virus infection reduces ganglionic viral load and minimizes subsequent viral shedding in mice

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.09.23.509057

N/A

0DataRank · unranked

2 citations

Anoria K. Haick, Daniel E. Strongin, Lindsay M. Klouser, Michelle A. Loprieno, Laurence Stensland +6 more

Cytomegalovirus (CMV) Reactivation and CMV-Specific Cell-Mediated Immunity After Chimeric Antigen Receptor T-Cell Therapy

Clinical Infectious Diseases(2023)10.1093/cid/ciad708

N/A

0DataRank · unranked

52 citations

Sarah Ibrahimi, Hu Xie, Elizabeth R Wong, Jessica Hecht, Mandeep K Sekhon +11 more

Cytomegalovirus breakthrough and resistance during letermovir prophylaxis

Bone Marrow Transplantation(2023)10.1038/s41409-023-01920-w

N/A

0DataRank · unranked

43 citations

Melinda A. Biernacki, Hu Xie, Jared Castor, Laurel Joncas-Schronce, Masumi Ueda +8 more

Adeno-associated virus vectors and neurotoxicity—lessons from preclinical and human studies

Gene Therapy(2023)10.1038/s41434-023-00405-1

N/A

0DataRank · unranked

33 citations

Martine Aubert, Keith R. Jerome, Daniel Stone

Breaching the blood-brain barrier: AAV triggers dose-dependent toxicity in the brain

Molecular Therapy — Methods & Clinical Development(2023)10.1016/j.omtm.2023.09.001

N/A

0DataRank · unranked

20 citations

Martine Aubert, Keith R. Jerome, Daniel Stone

Memory T cells possess an innate-like function in local protection from mucosal infection

Journal of Clinical Investigation(2023)10.1172/jci162800

N/A

0DataRank · unranked

25 citations

Veronica Davé, Irene Cruz Talavera, Jessica B. Graham, Jessica L. Swarts, Sean M. Hughes +14 more

Human herpesvirus-6 reactivation and disease after allogeneic haematopoietic cell transplantation in the era of letermovir for cytomegalovirus prophylaxis

Clinical Microbiology and Infection(2023)10.1016/j.cmi.2023.07.026

N/A

0DataRank · unranked

14 citations

Danniel Zamora, Erika S. Kiem, Winnie Liu, Sarah Ibrahimi, Rachel Blazevic +11 more

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Molecular Therapy — Methods & Clinical Development(2023)10.1016/j.omtm.2023.101121

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0DataRank · unranked

10 citations

Stefan Radtke, Emily Fields, Olivier Humbert, Mallory J Llewellyn, George S. Laszlo +5 more

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Scientific Reports(2023)10.1038/s41598-023-39232-0

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0DataRank · unranked

8 citations

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PLoS Pathogens(2023)10.1371/journal.ppat.1011114

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8 citations

Germán G. Gornalusse, David Siegel, Alton Barbehenn, Cassandra Thanh, Rebecca Hoh +20 more

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Microbiology Spectrum(2023)10.1128/spectrum.05176-22

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7 citations

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The Journal of Infectious Diseases(2023)10.1093/infdis/jiad284

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7 citations

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JAMA Network Open(2023)10.1001/jamanetworkopen.2023.0191

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0DataRank · unranked

3 citations

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Efficient ex vivo expansion of conserved element vaccine-specific CD8+ T-cells from SHIV-infected, ART-suppressed nonhuman primates

Frontiers in Immunology(2023)10.3389/fimmu.2023.1188018

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3 citations

Rasika Venkataraman, Shabnum Patel, Meei‐Li Huang, Catherine M. Bollard, Margherita Rosati +10 more

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Hepatology Communications(2023)10.1097/hc9.0000000000000009

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0DataRank · unranked

2 citations

Nadja Meumann, Anne-Sophie Kuhlmann, Christopher W. Peterson, Hong Xie, Pavitra Roychoudhury +16 more

Surveillance of Vermont wildlife in 2021-2022 reveals no detected SARS-CoV-2 viral RNA

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.04.25.538264

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0DataRank · unranked

4 citations

Margaret G. Mills, Madaline M. Schmidt, Jolene Gov, Yaël Perez, Mars Jindrich +50 more

Within-host rhinovirus evolution in upper and lower respiratory tract highlights capsid variability and mutation-independent compartmentalization

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.11.540440

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0DataRank · unranked

3 citations

Stephanie Goya, Carlos Avendaño, Jason Rupp, Jane Kuypers, Keith R. Jerome +4 more

Differences in expression of tumor suppressor, innate immune, inflammasome, and potassium/gap junction channel host genes significantly predict viral reservoir size during treated HIV infection

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.01.10.523535

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0DataRank · unranked

2 citations

David Siegel, Cassandra Thanh, Rebecca Hoh, Kristen S. Hobbs, Tony Pan +16 more

Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.07.17.549345

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0DataRank · unranked

2 citations

Pavitra Roychoudhury, Anthony L. Cunningham, Keith R. Jerome, David M. Koelle, Paul R. Kinchington +5 more

Late cytomegalovirus disease after hematopoietic cell transplantation: significance of novel transplantation techniques

Blood Advances(2024)10.1182/bloodadvances.2023012175

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0DataRank · unranked

28 citations

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Gene editing for latent herpes simplex virus infection reduces viral load and shedding in vivo

Nature Communications(2024)10.1038/s41467-024-47940-y

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24 citations

Anoria K. Haick, Daniel E. Strongin, Lindsay M. Klouser, Michelle A. Loprieno, Laurence Stensland +6 more

CD20 CAR T cells safely and reversibly ablate B cell follicles in a non-human primate model of HIV persistence

Molecular Therapy(2024)10.1016/j.ymthe.2024.02.030

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0DataRank · unranked

14 citations

Carly E. Starke, Nikhita H. Poole, Blake J. Rust, Keith R. Jerome, Hans‐Peter Kiem +2 more

Human herpesvirus 6 reactivation and disease are infrequent in chimeric antigen receptor T-cell therapy recipients

Blood(2024)10.1182/blood.2024024145

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0DataRank · unranked

19 citations

Elizabeth M. Krantz, Hu Xie, Sarah Ibrahimi, Erika S. Kiem, Mandeep K Sekhon +13 more

CMV reactivation during pretransplantation evaluation: a novel risk factor for posttransplantation CMV reactivation

Blood Advances(2024)10.1182/bloodadvances.2023012234

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0DataRank · unranked

15 citations

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Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice

Journal of Virology(2024)10.1128/jvi.01858-23

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0DataRank · unranked

7 citations

Pavitra Roychoudhury, Anthony L. Cunningham, Keith R. Jerome, David M. Koelle, Paul R. Kinchington +5 more

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Journal of Virology(2024)10.1128/jvi.00520-24

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0DataRank · unranked

0 citations

Pavitra Roychoudhury, Anthony L. Cunningham, Keith R. Jerome, David M. Koelle, Paul R. Kinchington +5 more

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Blood Advances(2025)10.1182/bloodadvances.2024015164

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0DataRank · unranked

5 citations

Patrick W Flaherty, Hu Xie, Mandeep K Sekhon, Clementine Chalal, Terry Stevens‐Ayers +9 more

Pooled CAR-T screening in pig-tailed macaques identifies designs with enhanced proliferation, trafficking, and persistence

Blood(2025)10.1182/blood.2025028683

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0DataRank · unranked

3 citations

Eric J Cavanaugh, Haiying Zhu, Carly E. Starke, Sarah M. Doherty, Teresa Einhaus +18 more

Cytomegalovirus Viral Load Continues to Predict Poor Outcomes in Adults and Children Despite Improved Hematopoietic Cell Transplantation Success

Open Forum Infectious Diseases(2025)10.1093/ofid/ofaf612

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0DataRank · unranked

3 citations

Hu Xie, Danniel Zamora, Alpana Waghmare, Joshua A. Hill, Elizabeth R. Duke +7 more

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Blood Advances(2025)10.1182/bloodadvances.2024015016

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0DataRank · unranked

4 citations

Stefan Radtke, Greta Kanestrom, Emily Fields, Olivier Humbert, Salvatore Fiorenza +11 more

Intracellular and extracellular dynamics of herpes simplex virus 1 DNA and infectious particles in epithelial and neuronal cells

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.05.13.653775

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0DataRank · unranked

0 citations

David A. Swan, Keith R. Jerome, Joshua T. Schiffer, Marius Walter, Shadisadat Esmaeili

Herpes simplex virus 1 strain 17+ with R2 mutation in UL37 has residual retrograde transport

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.25.661543

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0DataRank · unranked

0 citations

Anoria K. Haick, Paola A Massa, Lindsay M. Klouser, Laurence Stensland, Tracy K. Santo +3 more

Genital herpes shedding episodes associate with alterations in the spatial organization and activation of mucosal immune cells

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.06.24.661157

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0DataRank · unranked

0 citations

Rachael M. Zemek, Adino Tesfahun Tsegaye, Jessica B. Graham, Jessica L. Swarts, Sarah C. Vick +21 more

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The Journal of Infectious Diseases(2025)10.1093/infdis/jiaf503

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0DataRank · unranked

0 citations

Angela Campbell, Hu Xie, Chikara Ogimi, Alpana Waghmare, Jane Kuypers +12 more

Genital herpes shedding episodes associate with altered spatial organization and activation of mucosal immune cells

JCI Insight(2025)10.1172/jci.insight.197491

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0DataRank · unranked

0 citations

Rachael M. Zemek, Adino Tesfahun Tsegaye, Jessica B. Graham, Jessica L. Swarts, Sarah C. Vick +21 more

Direct RT-qPCR detection of SARS-CoV-2 RNA from patient nasopharyngeal swabs without an RNA extraction step

PLoS Biology(2020)10.1371/journal.pbio.3000896

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0DataRank · unranked

199 citations

Meei‐Li Huang, Garrett A. Perchetti, Scott Tighe, Pheobe Laaguiby, Jessica Hoffman +14 more

Cryptic transmission of SARS-CoV-2 in Washington state

Science(2020)10.1126/science.abc0523

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0DataRank · unranked

329 citations

Alexander L. Greninger, Pavitra Roychoudhury, Lea M. Starita, Michael Famulare, Meei‐Li Huang +62 more

In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age

PLoS Biology(2020)10.1371/journal.pbio.3000849

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303 citations

Vikas Peddu, Hong Xie, Lasata Shrestha, Meei‐Li Huang, Megan C. Mears +10 more

Occurrence and Timing of Subsequent Severe Acute Respiratory Syndrome Coronavirus 2 Reverse-transcription Polymerase Chain Reaction Positivity Among Initially Negative Patients

Clinical Infectious Diseases(2020)10.1093/cid/ciaa722

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0DataRank · unranked

111 citations

Saurabh Gombar, Catherine A. Hogan, Alexander L. Greninger, Vikas N. O’Reilly-Shah, Chloe Bryson‐Cahn +10 more

Clinical, laboratory, and temporal predictors of neutralizing antibodies against SARS-CoV-2 among COVID-19 convalescent plasma donor candidates

Journal of Clinical Investigation(2020)10.1172/jci144930

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84 citations

Chihiro Morishima, Stacy Selke, Danniel Zamora, Sarah McGuffin, Adrienne E. Shapiro +20 more

Gene editing and elimination of latent herpes simplex virus in vivo

Nature Communications(2020)10.1038/s41467-020-17936-5

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77 citations

Daniel E. Strongin, Pavitra Roychoudhury, Michelle A. Loprieno, Anoria K. Haick, Lindsay M. Klouser +11 more

Validation and verification of the Abbott RealTime SARS-CoV-2 assay analytical and clinical performance

Journal of Clinical Virology(2020)10.1016/j.jcv.2020.104474

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0DataRank · unranked

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