🏆 Finalist — NIH Data Sharing Index (“S-Index”) Challenge

Anand V. Sastry

University of California San Diego

ORCID: 0000-0002-8293-3909

Also affiliated with La Jolla Bioengineering Institute

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 4%percentile
0.588Author DataRank

Indexed papers

2in pilot corpus
datarank_citation_only_1hop_v6· scope data_onlyMethodology
Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 2 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

Top data-sharing exemplar

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

High-resolution temporal profiling of E. coli transcriptional response

Nature Communications(2023)10.1038/s41467-023-43173-7
Top 55%
0.297DataRank
Top 55%6 citations

Kevin Rychel, Andrew Lezia, Anand V. Sastry, Bernhard Ø. Palsson, Jeff Hasty +1 more

Papers

Driven by 21 papers — median percentile 44. Top paper: “Independent component analysis reveals 49 independently modulated gene sets within the global transcriptional regulatory architecture of multidrug-resistant Acinetobacter baumannii”.

Independent component analysis reveals 49 independently modulated gene sets within the global transcriptional regulatory architecture of multidrug-resistant Acinetobacter baumannii

mSystems(2024)10.1128/msystems.00606-23
N/A
0.343DataRank · unranked
7 citations

Saugat Poudel, Anand V. Sastry, Kevin Rychel, Richard Szubin, Nicholas Dillon +7 more

High-resolution temporal profiling of E. coli transcriptional response

Nature Communications(2023)10.1038/s41467-023-43173-7
Top 55%
0.297DataRank
Top 55%6 citations

Kevin Rychel, Andrew Lezia, Anand V. Sastry, Bernhard Ø. Palsson, Jeff Hasty +1 more

Machine Learning of Pseudomonas aeruginosa transcriptomes identifies independently modulated sets of genes associated with known transcriptional regulators

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.07.28.454220
Top 56%
0.292DataRank
Top 56%4 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie +3 more

Optimal dimensionality selection for independent component analysis of transcriptomic data

BMC Bioinformatics(2021)10.1186/s12859-021-04497-7
N/A
0DataRank · unranked
67 citations

Cameron Lamoureux, Saugat Poudel, Bernhard Ø. Palsson, Anand V. Sastry, John Luke McConn

Restoration of fitness lost due to dysregulation of the pyruvate dehydrogenase complex is triggered by ribosomal binding site modifications

Cell Reports(2021)10.1016/j.celrep.2021.108961
N/A
0DataRank · unranked
27 citations

Connor A. Olson, Anand V. Sastry, Arjun Patel, Richard Szubin, Laurence Yang +3 more

Identification of a transcription factor, PunR, that regulates the purine and purine nucleoside transporter punC in E. coli

Communications Biology(2021)10.1038/s42003-021-02516-0
N/A
0DataRank · unranked
25 citations

Ye Gao, Anand V. Sastry, Ying Hefner, Hyun Gyu Lim, Dmitry A. Rodionov +3 more

Machine Learning of Bacterial Transcriptomes Reveals Responses Underlying Differential Antibiotic Susceptibility

mSphere(2021)10.1128/msphere.00443-21
N/A
0DataRank · unranked
21 citations

Nicholas Dillon, Amitesh Anand, Saugat Poudel, Ying Hefner, Sibei Xu +5 more

Optimal dimensionality selection for independent component analysis of transcriptomic data

bioRxiv (Cold Spring Harbor Laboratory)(2021)10.1101/2021.05.26.445885
N/A
0DataRank · unranked
11 citations

Cameron Lamoureux, Saugat Poudel, Bernhard Ø. Palsson, Anand V. Sastry, John Luke McConn

A novel transcription factor PunR and Nac are involved in purine and purine nucleoside transporter punC regulation in E. coli

Research Square(2021)10.21203/rs.3.rs-146218/v1
N/A
0DataRank · unranked
3 citations

Ye Gao, Anand V. Sastry, Ying Hefner, Reo Yoo, Dmitry A. Rodionov +3 more

Revealing 29 sets of independently modulated genes in Staphylococcus aureus , their regulators and role in key physiological responses

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.03.18.997296
N/A
0DataRank · unranked
8 citations

Hannah Tsunemoto, Yara Seif, Anand V. Sastry, Richard Szubin, Sibei Xu +7 more

Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa

Nucleic Acids Research(2022)10.1093/nar/gkac743
N/A
0DataRank · unranked
36 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Siddharth Chauhan +3 more

Mathematical models to study the biology of pathogens and the infectious diseases they cause

iScience(2022)10.1016/j.isci.2022.104079
N/A
0DataRank · unranked
22 citations

Jonathan M. Monk, Saugat Poudel, Charles J. Norsigian, Anand V. Sastry, Chen Liao +15 more

Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.04.04.487074
N/A
0DataRank · unranked
0 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Siddharth Chauhan +3 more

Laboratory evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance

Cell Reports(2023)10.1016/j.celrep.2023.113105
N/A
0DataRank · unranked
24 citations

Justin Tan, Arjun Patel, Cameron Lamoureux, Ying Hefner, Richard Szubin +11 more

Model-driven experimental design workflow expands understanding of regulatory role of Nac in Escherichia coli

NAR Genomics and Bioinformatics(2023)10.1093/nargab/lqad006
N/A
0DataRank · unranked
6 citations

Sang‐Mok Lee, Ali Ebrahim, Zoe K. Scott-Nevros, Bernhard Ø. Palsson, Laurence Yang +4 more

Proteome allocation is linked to transcriptional regulation through a modularized transcriptome

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.02.20.529291
N/A
0DataRank · unranked
4 citations

Dominic McGrosso, Ying Hefner, Anaamika Campeau, Anand V. Sastry, Svetlana Maurya +4 more

Proteome allocation is linked to transcriptional regulation through a modularized transcriptome

Nature Communications(2024)10.1038/s41467-024-49231-y
N/A
0DataRank · unranked
16 citations

Dominic McGrosso, Ying Hefner, Anaamika Campeau, Anand V. Sastry, Svetlana Maurya +4 more

Machine learning reveals the transcriptional regulatory network and circadian dynamics of Synechococcus elongatus PCC 7942

Proceedings of the National Academy of Sciences(2024)10.1073/pnas.2410492121
N/A
0DataRank · unranked
12 citations

Tahani Al Bulushi, Anand V. Sastry, Cigdem Sancar, Richard Szubin, Susan S. Golden +2 more

Machine learning fromPseudomonas aeruginosatranscriptomes identifies independently modulated sets of genes associated with known transcriptional regulators

Nucleic Acids Research(2022)10.1093/nar/gkac187
N/A
0DataRank · unranked
43 citations

Hannah Tsunemoto, Anand V. Sastry, Richard Szubin, Kevin Rychel, Joseph Sugie +3 more

Decomposition of transcriptional responses provides insights into differential antibiotic susceptibility

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.04.077271
N/A
0DataRank · unranked
7 citations

Nick Dillon, Saugat Poudel, Ying Hefner, Sibei Xu, Richard Szubin +4 more

PtrR (YneJ) is a novel E. coli transcription factor regulating the putrescine stress response and glutamate utilization

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.04.27.065417
N/A
0DataRank · unranked
7 citations

Ye Gao, Anand V. Sastry, Jonathan M. Monk, Nicholas Wong, Richard Szubin +5 more