Xu G. Yu

Also affiliated with Harvard University, Ragon Institute of MGH, MIT and Harvard, Massachusetts General Hospital

Immunology and MicrobiologyMedicine

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 70 papers. Top paper: “Detection of SARS-CoV-2 with SHERLOCK One-Pot Testing”.

Detection of SARS-CoV-2 with SHERLOCK One-Pot Testing

New England Journal of Medicine(2020)10.1056/nejmc2026172

N/A

14.8DataRank · unranked

809 citations

Alim Ladha, Makoto Saito, Nam-Gyun Kim, Ann E. Woolley, Michael Segel +18 more

Viral epitope profiling of COVID-19 patients reveals cross-reactivity and correlates of severity

Science(2020)10.1126/science.abd4250

N/A

14.5DataRank · unranked

769 citations

Eric Fujimura, Tomasz Kula, Richard T. Timms, I‐Hsiu Lee, Yumei Leng +95 more

Distinct viral reservoirs in individuals with spontaneous control of HIV-1

Nature(2020)10.1038/s41586-020-2651-8

N/A

7.4DataRank · unranked

423 citations

Xiaodong Lian, Ce Gao, Xiaoming Sun, Kevin Einkauf, Joshua M Chevalier +26 more

Loss of Bcl-6-Expressing T Follicular Helper Cells and Germinal Centers in COVID-19

Cell(2020)10.1016/j.cell.2020.08.025

N/A

0.997DataRank · unranked

770 citations

Hsiao-Hsuan Kuo, Julie Boucau, Jocelyn R. Farmer, Hugues Allard‐Chamard, Vinay S. Mahajan +46 more

Phenotypic signatures of immune selection in HIV-1 reservoir cells

Nature(2023)10.1038/s41586-022-05538-8

N/A

0.790DataRank · unranked

193 citations

Ce Gao, Ciputra Adijaya Hartana, Matthew R. Osborn, Kevin Einkauf, Xiaodong Lian +8 more

SARS-CoV-2 Viral Load is Associated with Increased Disease Severity and Mortality

medRxiv(2020)10.1101/2020.07.15.20131789

N/A

0.681DataRank · unranked

93 citations

James Regan, Kendyll Coxen, Heather Corry, Colline Wong, Alexandra Rosenthal +25 more

HIV post-treatment controllers have distinct immunological and virological features

Proceedings of the National Academy of Sciences(2023)10.1073/pnas.2218960120

N/A

0.628DataRank · unranked

65 citations

Xiaoming Sun, Yijia Li, Meghan Melberg, Daniela Moïsi, Rachel Gottlieb +23 more

Tie2 activation protects against prothrombotic endothelial dysfunction in COVID-19

JCI Insight(2021)10.1172/jci.insight.151527

N/A

0.617DataRank · unranked

60 citations

Gabriel Pajares Hurtado, Zachary Manickas-Hill, Kelsey D. Sack, Siyu M. Chen, Victoria M. Bhambhani +12 more

A Possible Sterilizing Cure of HIV-1 Infection Without Stem Cell Transplantation

Annals of Internal Medicine(2021)10.7326/l21-0297

N/A

0.614DataRank · unranked

59 citations

Kyra Seiger, Xiaodong Lian, Weiwei Sun, Elizabeth M. Parsons, Ce Gao +19 more

Measurement of circulating viral antigens post-SARS-CoV-2 infection in a multicohort study

Clinical Microbiology and Infection(2024)10.1016/j.cmi.2024.09.001

N/A

0.604DataRank · unranked

55 citations

Ella Borberg, Yulu Chen, Yasmeen Senussi, Sujata Chalise, Zachary Manickas-Hill +92 more

SARS-CoV-2 Viral Load is Associated with Increased Disease Severity and Mortality

Research Square(2020)10.21203/rs.3.rs-43878/v1

N/A

0.593DataRank · unranked

51 citations

James Regan, Kendyll Coxen, Heather Corry, Colline Wong, Alexandra Rosenthal +25 more

Profound Treg perturbations correlate with COVID-19 severity

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.11.416180

N/A

0.557DataRank · unranked

40 citations

Juliette Léon, Kaitavjeet Chowdhary, Daniel A. Michelson, Brinda Vijaykumar, Liang Yang +13 more

Selection of epigenetically privileged HIV-1 proviruses during treatment with panobinostat and interferon-α2a

Cell(2024)10.1016/j.cell.2024.01.037

N/A

0.538DataRank · unranked

35 citations

Ce Gao, Ciputra Adijaya Hartana, Weiwei Sun, Leah Carrere, Liliana Vela +16 more

Persistence of intact HIV-1 proviruses in the brain during antiretroviral therapy

eLife(2023)10.7554/elife.89837.3

N/A

0.457DataRank · unranked

20 citations

Yelizaveta Rassadkina, Ce Gao, Sarah Isabel Collens, Xiaodong Lian, Isaac H. Solomon +4 more

Profound reduction of HIV-1 reservoir cells over 3 decades of antiretroviral therapy started in early infancy

JCI Insight(2024)10.1172/jci.insight.186550

N/A

0.448DataRank · unranked

11 citations

Leah Carrere, Chloé M. Naasz, Sruthi Kalavacherla, Toong Seng Tan, Lesley de Armas +6 more

Immune-profiling of ZIKV-infected patients identifies a distinct function of plasmacytoid dendritic cells for immune cross-regulation

Nature Communications(2020)10.1038/s41467-020-16217-5

N/A

0.425DataRank · unranked

16 citations

Stéphane Hua, Ce Gao, Jane E. Blackmer, Zhengyu Ouyang, Kevin L. Ard +7 more

SARS-CoV-2 infection elucidates features of pregnancy-specific immunity

Cell Reports(2024)10.1016/j.celrep.2024.114933

N/A

0.419DataRank · unranked

8 citations

Eunha Kim, Rachelly Normand, Guangqing Lu, Lydia L. Shook, Amanda E. Lyall +28 more

Immune-profiling of SARS-CoV-2 viremic patients reveals dysregulated innate immune responses

Frontiers in Immunology(2022)10.3389/fimmu.2022.984553

N/A

0.416DataRank · unranked

15 citations

Ce Gao, Ke Zhao, Yanhui Yang, Yelizaveta Rassadkina, Jesse Fajnzylber +5 more

Rapid “mix and read” assay for scalable detection of SARS-CoV-2 antibodies in patient plasma

medRxiv(2020)10.1101/2020.09.01.20184101

N/A

0.312DataRank · unranked

7 citations

Radosław P. Nowak, Daan Overwijn, N. Connor Payne, Stephanie Fischinger, Caroline Atyeo +9 more

Factors associated with resistance of HIV-1 reservoir viruses to neutralization by autologous IgG antibodies

Journal of Clinical Investigation(2025)10.1172/jci194081

N/A

0.269DataRank · unranked

5 citations

Joseph Varriale, Huan-Yi Wu, Vivek Hariharan, Milica Moskovljevic, Toong Seng Tan +15 more

Immune Modulation of HIV-1 Reservoir Size in Early-Treated Neonates

The Journal of Infectious Diseases(2023)10.1093/infdis/jiad173

N/A

0.219DataRank · unranked

3 citations

Pilar García Broncano, Kenneth Maswabi, Gbolahan Ajibola, Sikhulile Moyo, Terence Mohammed +11 more

A lab-on-a-chip for the concurrent electrochemical detection of SARS-CoV-2 RNA and anti-SARS-CoV-2 antibodies in saliva and plasma

Nature Biomedical Engineering(2022)10.1038/s41551-022-00919-w

N/A

0DataRank · unranked

279 citations

Joshua Rainbow, Sharma T. Sanjay, Pawan Jolly, Helena de Puig, Mohamed Yafia +11 more

Parallel analysis of transcription, integration, and sequence of single HIV-1 proviruses

Cell(2022)10.1016/j.cell.2021.12.011

N/A

0DataRank · unranked

272 citations

Matthew R. Osborn, Ce Gao, Weiwei Sun, Xiaoming Sun, Xiaodong Lian +10 more

Genetic regulation of OAS1 nonsense-mediated decay underlies association with COVID-19 hospitalization in patients of European and African ancestries

Nature Genetics(2022)10.1038/s41588-022-01113-z

N/A

0DataRank · unranked

140 citations

Megan L. Stanifer, Oscar Flórez-Vargas, Olusegun O. Onabajo, Brenen W. Papenberg, Muhammad Atif Zahoor +65 more

Temporal changes in T cell subsets and expansion of cytotoxic CD4+ T cells in the lungs in severe COVID-19

Clinical Immunology(2022)10.1016/j.clim.2022.108991

N/A

0DataRank · unranked

57 citations

Julie Boucau, Hsiao-Hsuan Kuo, Cory A. Perugino, Vinay S. Mahajan, Jocelyn R. Farmer +14 more

An ordeal that does not heal: understanding barriers to a cure for HIV-1 infection

Trends in Immunology(2022)10.1016/j.it.2022.06.002

N/A

0DataRank · unranked

41 citations

Ce Gao, Xu G. Yu, Mathias Lichterfeld

Immune correlates of HIV-1 reservoir cell decline in early-treated infants

Cell Reports(2022)10.1016/j.celrep.2022.111126

N/A

0DataRank · unranked

40 citations

Pilar García‐Broncano, Yelizaveta Rassadkina, Xiaodong Lian, Chenyang Jiang, Kevin Einkauf +21 more

Cooperation between cGAS and RIG-I sensing pathways enables improved innate recognition of HIV-1 by myeloid dendritic cells in elite controllers

Frontiers in Immunology(2022)10.3389/fimmu.2022.1017164

N/A

0DataRank · unranked

14 citations

Ce Gao, Marta Calvet‐Mirabent, Zhengyu Ouyang, Mathias Lichterfeld, Xu G. Yu +1 more

HIV-1 reservoir evolution in infants infected with clade C from Mozambique

International Journal of Infectious Diseases(2022)10.1016/j.ijid.2022.11.042

N/A

0DataRank · unranked

10 citations

Stefano Rinaldi, Yelizaveta Rassadkina, Vinh Dinh, Ce Gao, Suresh Pallikkuth +12 more

Progressive transformation of the HIV-1 reservoir cell profile over two decades of antiviral therapy

Cell Host & Microbe(2023)10.1016/j.chom.2022.12.002

N/A

0DataRank · unranked

120 citations

Kyra Seiger, Elizabeth M. Parsons, Ce Gao, Weiwei Sun, Gregory T. Gladkov +19 more

High-throughput, targeted MHC class I immunopeptidomics using a functional genetics screening platform

Nature Biotechnology(2023)10.1038/s41587-022-01566-x

N/A

0DataRank · unranked

50 citations

Richard T. Timms, Nouran S. Abdelfattah, Yumei Leng, Felipe Lelis, Duane R. Wesemann +3 more

Extrafollicular IgD−CD27−CXCR5−CD11c− DN3 B cells infiltrate inflamed tissues in autoimmune fibrosis and in severe COVID-19

Cell Reports(2023)10.1016/j.celrep.2023.112630

N/A

0DataRank · unranked

48 citations

Naoki Kaneko, Alice Bertocchi, Na Sun, Julie Boucau, Hsiao-Hsuan Kuo +20 more

IL-15-dependent immune crosstalk between natural killer cells and dendritic cells in HIV-1 elite controllers

Cell Reports(2023)10.1016/j.celrep.2023.113530

N/A

0DataRank · unranked

18 citations

Mélanie Lancien, Ce Gao, Yelizaveta Rassadkina, Mathias Lichterfeld, Xu G. Yu +1 more

Persistence of intact HIV-1 proviruses in the brain during antiretroviral therapy

eLife(2023)10.7554/elife.89837

N/A

0DataRank · unranked

12 citations

Yelizaveta Rassadkina, Ce Gao, Sarah Isabel Collens, Xiaodong Lian, Isaac H. Solomon +4 more

The HIV-2 proviral landscape is dominated by defective proviruses

AIDS(2023)10.1097/qad.0000000000003776

N/A

0DataRank · unranked

8 citations

Ce Gao, Charlotte A. Chang, Xiaodong Lian, Roger Shapiro, Xu G. Yu +3 more

Diagnostic TR-FRET assays for detection of antibodies in patient samples

Cell Reports Methods(2023)10.1016/j.crmeth.2023.100421

N/A

0DataRank · unranked

6 citations

Radosław P. Nowak, Daan Overwijn, N. Connor Payne, Stephanie Fischinger, Caroline Atyeo +18 more

Persistence of intact HIV-1 proviruses in the brain during antiretroviral therapy

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.26.546135

N/A

0DataRank · unranked

3 citations

Yelizaveta Rassadkina, Ce Gao, Sarah Isabel Collens, Xiaodong Lian, Isaac H. Solomon +4 more

Persistence of intact HIV-1 proviruses in the brain during antiretroviral therapy

(2023)10.7554/elife.89837.2

N/A

0DataRank · unranked

0 citations

Yelizaveta Rassadkina, Ce Gao, Sarah Isabel Collens, Xiaodong Lian, Isaac H. Solomon +4 more

Immune targeting of HIV-1 reservoir cells: a path to elimination strategies and cure

Nature Reviews Microbiology(2024)10.1038/s41579-024-01010-8

N/A

0DataRank · unranked

60 citations

Benjamin Bone, Toong Seng Tan, Weiwei Sun, Maxime Bellefroid, T. Struyve +4 more

HIV coinfection exacerbates HBV-induced liver fibrogenesis through a HIF-1α- and TGF-β1-dependent pathway

Journal of Hepatology(2024)10.1016/j.jhep.2024.01.026

N/A

0DataRank · unranked

36 citations

Charlotte Warner, Xiaoqiong Duan, Zhimeng Cheng, Andre J. Jeyarajan, Wenting Li +8 more

The HIV-1 reservoir landscape in persistent elite controllers and transient elite controllers

Journal of Clinical Investigation(2024)10.1172/jci174215

N/A

0DataRank · unranked

20 citations

Xiaodong Lian, Ce Gao, Isabelle Roseto, María Reyes Jiménez‐León, Gregory T. Gladkov +34 more

Impact of HLA class I functional divergence on HIV control

Science(2024)10.1126/science.adk0777

N/A

0DataRank · unranked

15 citations

Colm Ó’hUigín, Yuko Yuki, Arman Bashirova, David R. Collins, Jonathan M. Urbach +11 more

Exceptional, naturally occurring HIV-1 control: Insight into a functional cure

Med(2024)10.1016/j.medj.2024.06.008

N/A

0DataRank · unranked

14 citations

Stephen A. Migueles, Xu G. Yu, Javier Martínez‐Picado, María Salgado

Footprints of innate immune activity during HIV-1 reservoir cell evolution in early-treated infection

The Journal of Experimental Medicine(2024)10.1084/jem.20241091

N/A

0DataRank · unranked

10 citations

Ce Gao, Gregory T. Gladkov, Isabelle Roseto, Leah Carrere, Elizabeth M. Parsons +91 more

Differences in HIV-1 reservoir size, landscape characteristics and decay dynamics in acute and chronic treated HIV-1 Clade C infection

medRxiv(2024)10.1101/2024.02.16.24302713

N/A

0DataRank · unranked

6 citations

Guinevere Q. Lee, Nicole Reddy, Tatenda JB Chikowore, Kathy Baisley, Krista L. Dong +5 more

Differences in HIV-1 reservoir size, landscape characteristics and decay dynamics in acute and chronic treated HIV-1 Clade C infection

eLife(2024)10.7554/elife.96617.1

N/A

0DataRank · unranked

2 citations

Guinevere Q. Lee, Nicole Reddy, Tatenda JB Chikowore, Kathy Baisley, Krista L. Dong +5 more

Reviewer #3 (Public Review): Differences in HIV-1 reservoir size, landscape characteristics and decay dynamics in acute and chronic treated HIV-1 Clade C infection

(2024)10.7554/elife.96617.1.sa0

N/A

0DataRank · unranked

0 citations

Guinevere Q. Lee, Nicole Reddy, Tatenda J.B. Chikowore, Kathy Baisley, Krista L. Dong +5 more

Reviewer #2 (Public Review): Differences in HIV-1 reservoir size, landscape characteristics and decay dynamics in acute and chronic treated HIV-1 Clade C infection

(2024)10.7554/elife.96617.1.sa1

N/A

0DataRank · unranked

0 citations

Guinevere Q. Lee, Nicole Reddy, Tatenda J.B. Chikowore, Kathy Baisley, Krista L. Dong +5 more

Distinct viral reservoirs and immune signatures in individuals on long-term antiretroviral therapy with perinatally acquired HIV-1

Cell Reports Medicine(2025)10.1016/j.xcrm.2025.102150

N/A

0DataRank · unranked

14 citations

Nicola Cotugno, Chiara Pighi, Arianna Rotili, Seohyun Hong, Leah Carrere +26 more

HIV post-treatment controllers have distinct immunological and virological features

UNC Libraries(2025)10.17615/aeyv-ay79

N/A

0DataRank · unranked

0 citations

David M. Margolis, Paul A. Volberding, Joseph J. Eron, Jeffrey M. Jacobson, Rachel Gottlieb +23 more

SARS-CoV-2 viral load is associated with increased disease severity and mortality

Nature Communications(2020)10.1038/s41467-020-19057-5

N/A

0DataRank · unranked

981 citations

James Regan, Kendyll Coxen, Heather Corry, Colline Wong, Alexandra Rosenthal +95 more

Recommendations for measuring HIV reservoir size in cure-directed clinical trials

Nature Medicine(2020)10.1038/s41591-020-1022-1

N/A

0DataRank · unranked

140 citations

Douglas D. Richman, Robert F. Siliciano, Michel C. Nussenzweig, Bonnie J. Howell, Javier Martínez‐Picado +29 more

Virus detection using nanoparticles and deep neural network–enabled smartphone system

Science Advances(2020)10.1126/sciadv.abd5354

N/A

0DataRank · unranked

79 citations

Anish Vasan, Aradana Muthupandian, Manoj Kumar Kanakasabapathy, Prudhvi Thirumalaraju, Aparna Sreeram +7 more

Liver Fibrosis Index FIB‐4 Is Associated With Mortality in COVID‐19

Hepatology Communications(2020)10.1002/hep4.1650

N/A

0DataRank · unranked

65 citations

James Regan, Jesse Fajnzylber, Kendyll Coxen, Heather Corry, Colline Wong +11 more

Blood and Lymph Node Dissemination of Clonal Genome-Intact Human Immunodeficiency Virus 1 DNA Sequences During Suppressive Antiretroviral Therapy

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa137

N/A

0DataRank · unranked

30 citations

Riddhima Banga, Guinevere Q. Lee, Ce Gao, Matthias Cavassini, Jean-Marc Corpataux +7 more

Immunological Fingerprints of Controllers Developing Neutralizing HIV-1 Antibodies

Cell Reports(2020)10.1016/j.celrep.2019.12.087

N/A

0DataRank · unranked

26 citations

Ce Gao, Hsiao Rong Chen, Zhengyu Ouyang, Dhohyung Kim, Kellie E. Kolb +5 more

Maintenance of Viral Suppression in Human Immunodeficiency Virus Controllers Despite Waning T-Cell Responses During Antiretroviral Therapy

The Journal of Infectious Diseases(2020)10.1093/infdis/jiaa294

N/A

0DataRank · unranked

5 citations

Pilar García‐Broncano, Michael J. Peluso, Florencia Segal, Ronald J. Bosch, Carla Roberts‐Toler +10 more

Point-of-care testing for COVID-19 using SHERLOCK diagnostics

medRxiv(2020)10.1101/2020.05.04.20091231

N/A

0DataRank · unranked

337 citations

Alim Ladha, Makoto Saito, Michael Segel, Robert Bruneau, Mee-li W. Huang +10 more

Profound Treg perturbations correlate with COVID-19 severity

Proceedings of the National Academy of Sciences(2021)10.1073/pnas.2111315118

N/A

0DataRank · unranked

178 citations

Juliette Léon, Kaitavjeet Chowdhary, Daniel A. Michelson, Brinda Vijaykumar, Liang Yang +32 more

Signatures of immune selection in intact and defective proviruses distinguish HIV-1 elite controllers

Science Translational Medicine(2021)10.1126/scitranslmed.abl4097

N/A

0DataRank · unranked

104 citations

Ce Gao, Xiaoming Sun, Chenyang Jiang, Kevin Einkauf, Kyra Seiger +13 more

Long noncoding RNA MIR4435-2HG enhances metabolic function of myeloid dendritic cells from HIV-1 elite controllers

Journal of Clinical Investigation(2021)10.1172/jci146136

N/A

0DataRank · unranked

45 citations

Yelizaveta Rassadkina, Ce Gao, Enrique Martín‐Gayo, Bruce D. Walker, Mathias Lichterfeld +2 more

Nicotinamide Adenine Dinucleotide Biosynthetic Impairment and Urinary Metabolomic Alterations Observed in Hospitalized Adults With COVID-19–Related Acute Kidney Injury

Kidney International Reports(2021)10.1016/j.ekir.2021.09.001

N/A

0DataRank · unranked

29 citations

Matthew Cheung, Landon Wilson, Jeffrey C. Edberg, Nathaniel Erdmann, Alec A. Schmaier +8 more

Viral Load Kinetics of Severe Acute Respiratory Syndrome Coronavirus 2 in Hospitalized Individuals With Coronavirus Disease 2019

Open Forum Infectious Diseases(2021)10.1093/ofid/ofab153

N/A

0DataRank · unranked

23 citations

James P. Flynn, Alexandra Rosenthal, Hannah Jordan, Yijia Li, Rida Chishti +95 more

Innate lymphoid cells and disease tolerance in SARS-CoV-2 infection

medRxiv(2021)10.1101/2021.01.14.21249839

N/A

0DataRank · unranked

17 citations

Yetao Wang, Zachary Manickas-Hill, Claudia Carbone, Ann Dauphin, Brittany P. Boribong +13 more

Lab-on-a-chip multiplexed electrochemical sensor enables simultaneous detection of SARS-CoV-2 RNA and host antibodies

medRxiv(2021)10.1101/2021.09.01.21262387

N/A

0DataRank · unranked

17 citations

Joshua Rainbow, Sanjay Sharma Timilsina, Pawan Jolly, Helena de Puig, Mohamed Yafia +11 more

Genetic regulation of OAS1 nonsense-mediated decay underlies association with risk of severe COVID-19

medRxiv(2021)10.1101/2021.07.09.21260221

N/A

0DataRank · unranked

13 citations

Megan L. Stanifer, Oscar Flórez-Vargas, Olusegun O. Onabajo, Muhammad Atif Zahoor, Brenen W. Papenberg +49 more

Tie2 activation protects against prothrombotic endothelial dysfunction in COVID-19

medRxiv(2021)10.1101/2021.05.13.21257070

N/A

0DataRank · unranked

12 citations

Gabriel Pajares Hurtado, Zachary Manickas-Hill, Kelsey D. Sack, Siyu M. Chen, Victoria M. Bhambhani +12 more

Expansion of Cytotoxic CD4+ T cells in the lungs in severe COVID-19

medRxiv(2021)10.1101/2021.03.23.21253885

N/A

0DataRank · unranked

8 citations

Julie Boucau, Hsiao-Hsuan Kuo, Cory A. Perugino, Vinay S. Mahajan, Jocelyn R. Farmer +14 more

Type I, II, and III interferon signatures correspond to COVID-19 disease severity

medRxiv(2021)10.1101/2021.03.10.21253317

N/A

0DataRank · unranked

3 citations

Shadi Salloum, Jeffrey Wang, Lai Ping Wong, James Regan, Kristina Lefteri +7 more

Persistent Circulating Severe Acute Respiratory Syndrome Coronavirus 2 Spike Is Associated With Post-acute Coronavirus Disease 2019 Sequelae

Clinical Infectious Diseases(2022)10.1093/cid/ciac722

N/A

0DataRank · unranked

546 citations

Yasmeen Senussi, Zachary Manickas-Hill, Xu G. Yu, Jonathan Z. Li, Galit Alter +2 more