Zhaoqian Su

Also affiliated with Vanderbilt University, Takeda (United States), Vanderbilt Health, Takeda (Japan)

Biochemistry, Genetics and Molecular BiologyMedicineImmunology and Microbiology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 32 papers. Top paper: “Understanding the Targeting Mechanisms of Multi-Specific Biologics in Immunotherapy with Multiscale Modeling”.

Understanding the Targeting Mechanisms of Multi-Specific Biologics in Immunotherapy with Multiscale Modeling

iScience(2020)10.1016/j.isci.2020.101835

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0DataRank · unranked

10 citations

Bo Wang, Steven C. Almo, Yinghao Wu, Zhaoqian Su

Understanding the Impacts of Conformational Dynamics on the Regulation of Protein–Protein Association by a Multiscale Simulation Method

Journal of Chemical Theory and Computation(2020)10.1021/acs.jctc.0c00439

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0DataRank · unranked

8 citations

Zhaoqian Su, Yinghao Wu, Kalyani Dhusia

Using Coarse-Grained Simulations to Characterize the Mechanisms of Protein–Protein Association

Biomolecules(2020)10.3390/biom10071056

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9 citations

Zhaoqian Su, Yinghao Wu, Kalyani Dhusia

A Multiscale and Comparative Model for Receptor Binding of 2019 Novel Coronavirus and the Implication of its Life Cycle in Host Cells

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.02.20.958272

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0DataRank · unranked

19 citations

Yinghao Wu, Zhaoqian Su

Cadherin Clusters Stabilized by a Combination of Specific and Nonspecific Cis-Interactions

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.05.22.110015

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0DataRank · unranked

3 citations

Zhaoqian Su, Vinh H. Vu, Yinghao Wu, Deborah Leckband, Daniel K. Schwartz +1 more

Mechanistic Dissection of Spatial Organization in NF-κB Signaling Pathways by Hybrid Simulations

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.11.11.378331

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0DataRank · unranked

0 citations

Kalyani Dhusia, Zhaoqian Su, Yinghao Wu

A structural-based machine learning method to classify binding affinities between TCR and peptide-MHC complexes

Molecular Immunology(2021)10.1016/j.molimm.2021.07.020

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0DataRank · unranked

17 citations

Zhaoqian Su, Yinghao Wu, Kalyani Dhusia

Computational Assessment of Protein–Protein Binding Affinity by Reversely Engineering the Energetics in Protein Complexes

Genomics Proteomics & Bioinformatics(2021)10.1016/j.gpb.2021.03.004

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0DataRank · unranked

12 citations

Zhaoqian Su, Yinghao Wu, Bo Wang

Coarse-grained simulations of phase separation driven by DNA and its sensor protein cGAS

Archives of Biochemistry and Biophysics(2021)10.1016/j.abb.2021.109001

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0DataRank · unranked

11 citations

Kalyani Dhusia, Yinghao Wu, Zhaoqian Su

Understanding the impacts of cellular environments on ligand binding of membrane receptors by computational simulations

The Journal of Chemical Physics(2021)10.1063/5.0035970

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0DataRank · unranked

6 citations

Kalyani Dhusia, Yinghao Wu, Zhaoqian Su

Computational Simulation of Holin S105 in Membrane Bilayer and Its Dimerization Through a Helix-Turn-Helix Motif

The Journal of Membrane Biology(2021)10.1007/s00232-021-00187-w

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0DataRank · unranked

5 citations

Yinghao Wu, Zhaoqian Su, Brian B. Zhou

A computational study of co-inhibitory immune complex assembly at the interface between T cells and antigen presenting cells

PLoS Computational Biology(2021)10.1371/journal.pcbi.1008825

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0DataRank · unranked

3 citations

Kalyani Dhusia, Yinghao Wu, Zhaoqian Su

Mechanistic dissection of spatial organization in NF-κB signaling pathways by hybrid simulations

Integrative Biology(2021)10.1093/intbio/zyab006

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0DataRank · unranked

1 citations

Kalyani Dhusia, Zhaoqian Su, Yinghao Wu

Understanding the functional role of membrane confinements in TNF-mediated signaling by multiscale simulations

Communications Biology(2022)10.1038/s42003-022-03179-1

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0DataRank · unranked

20 citations

Kalyani Dhusia, Yinghao Wu, Zhaoqian Su

Dissecting the general mechanisms of protein cage self‐assembly by coarse‐grained simulations

Protein Science(2022)10.1002/pro.4552

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0DataRank · unranked

6 citations

Yinghao Wu, Zhaoqian Su

How does the same ligand activate signaling of different receptors in TNFR superfamily: a computational study

Journal of Cell Communication and Signaling(2022)10.1007/s12079-022-00701-2

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0DataRank · unranked

3 citations

Yinghao Wu, Zhaoqian Su

Computational simulations of bispecific T cell engagers by a multiscale model

Biophysical Journal(2023)10.1016/j.bpj.2023.12.012

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0DataRank · unranked

7 citations

Steven C. Almo, Yinghao Wu, Zhaoqian Su

Computational analyses of the interactome between TNF and TNFR superfamilies

Computational Biology and Chemistry(2023)10.1016/j.compbiolchem.2023.107823

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0DataRank · unranked

5 citations

Zhaoqian Su, Yinghao Wu, Kalyani Dhusia

A computational study for understanding the impact of p120-catenin on the cis-dimerization of cadherin

Journal of Molecular Cell Biology(2023)10.1093/jmcb/mjad055

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0DataRank · unranked

3 citations

Vinh H. Vu, Deborah Leckband, Yinghao Wu, Zhaoqian Su

Prediction of interactions between cell surface proteins by machine learning

Proteins Structure Function and Bioinformatics(2023)10.1002/prot.26648

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0DataRank · unranked

1 citations

Brian P. Griffin, Scott W. Emmons, Yinghao Wu, Zhaoqian Su

Understanding the General Principles of T Cell Engagement by Multiscale Computational Simulations

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.06.07.544116

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0DataRank · unranked

0 citations

Steven C. Almo, Yinghao Wu, Zhaoqian Su

Encoding the Space of Protein-protein Binding Interfaces by Artificial Intelligence

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.08.556812

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0DataRank · unranked

0 citations

Kalyani Dhusia, Yinghao Wu, Zhaoqian Su

Prediction of Interactions between Cell Surface Proteins by Machine Learning

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.09.12.557337

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0DataRank · unranked

0 citations

Brian P. Griffin, Scott Emmons, Yinghao Wu, Zhaoqian Su

Machine-learning-based Structural Analysis of Interactions between Antibodies and Antigens

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.12.06.570397

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0DataRank · unranked

0 citations

Zhaoqian Su, Tom Zhang, Yinghao Wu, Grace Zhang

Encoding the space of protein-protein binding interfaces by artificial intelligence

Computational Biology and Chemistry(2024)10.1016/j.compbiolchem.2024.108080

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0DataRank · unranked

2 citations

Kalyani Dhusia, Yinghao Wu, Zhaoqian Su

Machine-learning-based structural analysis of interactions between antibodies and antigens

Biosystems(2024)10.1016/j.biosystems.2024.105264

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0DataRank · unranked

1 citations

Xiaohan Kuang, Yuhao Zhang, Yunchao Liu, Zhaoqian Su, Tom Zhang +2 more

SuperWater: Predicting Water Molecule Positions on Protein Structures by Generative AI

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.18.624208

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0DataRank · unranked

5 citations

Zhaoqian Su, Yunchao Liu, Xiaobo Lin, J. S. Smith, Tyler Derr +3 more

Rationalize the Functional Roles of Protein-Protein Interactions in Targeted Protein Degradation by Kinetic Monte-Carlo Simulations

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.26.615190

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0DataRank · unranked

0 citations

Shanye Yin, Yinghao Wu, Zhaoqian Su

Intracellular protein-lipid interactions drive presynaptic assembly prior to neurexin recruitment

Neuron(2025)10.1016/j.neuron.2024.12.017

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0DataRank · unranked

9 citations

Araven Tiroumalechetty, Zhaoqian Su, Parise S. Henry, Brian Mueller, Erik M. Jørgensen +3 more

Superwater as a generative AI framework to predict water molecule positions on protein structures

Communications Chemistry(2025)10.1038/s42004-025-01789-4

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0DataRank · unranked

3 citations

Yunchao Liu, Xiaobo Lin, J. S. Smith, Tyler Derr, Yinghao Wu +5 more

Machine learning application to predict binding affinity between peptide containing non-canonical amino acids and HLA-A0201

PLoS ONE(2025)10.1371/journal.pone.0314833

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0DataRank · unranked

2 citations

Zhaoqian Su, Nathaniel Bloodworth, Yunchao Liu, Cristina E. Martina, David G. Harrison +2 more

Structure-based Predictions of Conformational B Cell Epitopes by Protein Language Model and Deep Learning

bioRxiv (Cold Spring Harbor Laboratory)(2025)10.1101/2025.10.29.685313

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0DataRank · unranked

0 citations

Zhaoqian Su, Felipe Vilicich, Xiaohan Kuang, Yunchao Liu, Grace Zhang +2 more