Matthew Holcomb

Also affiliated with La Jolla Alcohol Research, Scripps (United States)

Computer ScienceBiochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 100%percentile

0Author DataRank

Indexed papers

0in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Papers

Driven by 24 papers. Top paper: “Direct Observation of Peptide Hydrogel Self-Assembly”.

Direct Observation of Peptide Hydrogel Self-Assembly

ChemRxiv(2021)10.26434/chemrxiv-2021-6wbv4

N/A

0DataRank · unranked

0 citations

Erika Olson, Zhengwen Lian, Audrey Kim, Matthew Holcomb, Jörg Zimmermann +3 more

Evaluation of AlphaFold2 structures as docking targets

Protein Science(2022)10.1002/pro.4530

N/A

0DataRank · unranked

108 citations

Ya‐Ting Chang, David S. Goodsell, Stefano Forli, Matthew Holcomb

Direct observation of peptide hydrogel self-assembly

Chemical Science(2022)10.1039/d1sc06562a

N/A

0DataRank · unranked

20 citations

Erika Olson, Tania L. Lopez‐Silva, Zhengwen Lian, Audrey Y. Kim, Matthew Holcomb +4 more

Performance evaluation of flexible macrocycle docking in AutoDock

QRB Discovery(2022)10.1017/qrd.2022.18

N/A

0DataRank · unranked

15 citations

Diogo Santos‐Martins, Andreas F. Tillack, Stefano Forli, Matthew Holcomb

Stretching Peptides

ChemRxiv(2022)10.26434/chemrxiv-2022-ldq4b

N/A

0DataRank · unranked

1 citations

Anthony P. Silvestri, Sorina Chiorean, Brian P. Balo, Yifan Shi, Matthew Holcomb +7 more

Direct Observation of Peptide Hydrogel Self-Assembly

ChemRxiv(2022)10.26434/chemrxiv-2021-6wbv4-v2

N/A

0DataRank · unranked

0 citations

Erika Olson, Zhengwen Lian, Audrey Kim, Matthew Holcomb, Jörg Zimmermann +3 more

Performance evaluation of flexible macrocycle docking in AutoDock

ChemRxiv(2022)10.26434/chemrxiv-2022-txdt0

N/A

0DataRank · unranked

0 citations

Diogo Santos‐Martins, Andreas F. Tillack, Stefano Forli, Matthew Holcomb

Recommendation: Performance evaluation of flexible macrocycle docking in AutoDock — R0/PR3

(2022)10.1017/qrd.2022.18.pr3

N/A

0DataRank · unranked

0 citations

Diogo Santos‐Martins, Andreas F. Tillack, Stefano Forli, Matthew Holcomb

Recommendation: Performance evaluation of flexible macrocycle docking in AutoDock — R1/PR4

(2022)10.1017/qrd.2022.18.pr4

N/A

0DataRank · unranked

0 citations

Diogo Santos-Martins, Andreas F. Tillack, Stefano Forli, Matthew Holcomb

Ringtail: a Python tool for efficient management and storage of virtual screening results

ChemRxiv(2022)10.26434/chemrxiv-2022-x9ztv

N/A

0DataRank · unranked

0 citations

Andreas F. Tillack, Diogo Santos‐Martins, Matthew Holcomb, Stefano Forli, Althea Hansel-Harris

Orphan receptor GPR158 serves as a metabotropic glycine receptor: mGlyR

Science(2023)10.1126/science.add7150

N/A

0DataRank · unranked

84 citations

Stefano Zucca, Matthew Holcomb, Dipak N. Patil, Christina Garza, Brittany A. Wheatley +4 more

Stretching Peptides to Generate Small Molecule β-Strand Mimics

ACS Central Science(2023)10.1021/acscentsci.2c01462

N/A

0DataRank · unranked

18 citations

Anthony P. Silvestri, Sorina Chiorean, Dillon T. Flood, Brian P. Balo, Yifan Shi +8 more

Reactive Docking: A Computational Method for High-Throughput Virtual Screenings of Reactive Species

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c00832

N/A

0DataRank · unranked

8 citations

Matthew Holcomb, Diogo Santos‐Martins, Andreas F. Tillack, Althea Hansel-Harris, Stefano Forli +1 more

Ringtail: A Python Tool for Efficient Management and Storage of Virtual Screening Results

Journal of Chemical Information and Modeling(2023)10.1021/acs.jcim.3c00166

N/A

0DataRank · unranked

1 citations

Diogo Santos‐Martins, Niccolò Bruciaferri, Andreas F. Tillack, Matthew Holcomb, Stefano Forli +1 more

IP6, PF74 affect HIV-1 capsid stability through modulation of hexamer-hexamer tilt angle preference

Biophysical Journal(2024)10.1016/j.bpj.2024.12.016

N/A

0DataRank · unranked

1 citations

Matthew Holcomb, Diogo Santos‐Martins, Bruce E. Torbett, Stefano Forli, Christina Garza

Synergy of Machine Learning and Density Functional Theory Calculations for Predicting Experimental Lewis Base Affinity and Lewis Polybase Binding Atoms

ChemRxiv(2024)10.26434/chemrxiv-2023-lcxn0-v2

N/A

0DataRank · unranked

1 citations

Khanh Le, Linh Vu, Trang T. Nguyen, Matthew Holcomb, Stefano Forli +2 more

Docking guidance with experimental ligandstructural density improves docking poseprediction and virtual screening performance

ChemRxiv(2024)10.26434/chemrxiv-2024-pr56v

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0DataRank · unranked

1 citations

Andreas F. Tillack, Diogo Santos‐Martins, Matthew Holcomb, Stefano Forli, Althea Hansel-Harris

An mRNA Display Approach for Covalent Targeting of a Staphylococcus aureus Virulence Factor

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.11.06.622387

N/A

0DataRank · unranked

1 citations

Emily C. Woods, Jeyun Jo, Jiyun Zhu, Althea Hansel-Harris, Matthew Holcomb +12 more

IP6 and PF74 affect HIV-1 Capsid Stability through Modulation of Hexamer-Hexamer Tilt Angle Preference

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.03.11.584513

N/A

0DataRank · unranked

0 citations

Matthew Holcomb, Diogo Santos‐Martins, Bruce E. Torbett, Stefano Forli, Christina Garza

Synergy of machine learning and density functional theory calculations for predicting experimental Lewis base affinity and Lewis polybase binding atoms

Journal of Computational Chemistry(2024)10.1002/jcc.27329

N/A

0DataRank · unranked

0 citations

Khanh Le, Linh Vu, Trang T. Nguyen, Matthew Holcomb, Stefano Forli +2 more

An mRNA Display Approach for Covalent Targeting of a Staphylococcus aureus Virulence Factor

Journal of the American Chemical Society(2025)10.1021/jacs.4c15713

N/A

0DataRank · unranked

15 citations

Emily C. Woods, Jeyun Jo, Jiyun Zhu, Althea Hansel-Harris, Matthew Holcomb +13 more

AlphaFold-RandomWalk and AlphaFold-Ensemble: Sampling Alternative Protein Conformations with Perturbed Versions of AlphaFold

Journal of Chemical Information and Modeling(2025)10.1021/acs.jcim.5c02004

N/A

0DataRank · unranked

3 citations

Manuel A. Llanos, Monica L. Fernández‐Quintero, Johannes R. Loeffler, Matthew Holcomb, Andrew B. Ward +2 more

Meeko: molecule parameterization and software interoperability for docking and beyond

ChemRxiv(2025)10.26434/chemrxiv-2025-6b37n

N/A

0DataRank · unranked

2 citations

Yiran He, Jérôme Eberhardt, Parnika Sharma, Niccolò Bruciaferri, Matthew Holcomb +10 more

Design principles of the common Gly-X6-Gly membrane protein building block

Proceedings of the National Academy of Sciences(2025)10.1073/pnas.2503134122

N/A

0DataRank · unranked

0 citations

Catalina Avarvarei, C F Anderson, Matthew Holcomb, Weiyi Tang, Xiaoping Dai +7 more