Marc Jan Bonder

Also affiliated with University of Groningen, German Cancer Research Center, Heidelberg University, Oncode Institute, European Molecular Biology Laboratory

Biochemistry, Genetics and Molecular Biology

Pilot corpus only

This score is computed over theSindex pilot corpus and does not cover the full scientific literature. Scores are relative to papers we have ingested — papers, authors, and institutions outside the pilot are not represented. Methodology.

Top 1%percentile

9.6Author DataRank

Indexed papers

7in pilot corpus

datarank_citation_only_1hop_v6· scope data_onlyMethodology

Why this DataRank?

An author's DataRank is the sum of the DataRanks of all 7 indexed papers attributed to them. A prolific author with many moderate-impact papers can outrank one with a single high-impact paper.

Author scores recompute whenever paper DataRanks are refreshed, so this number lags the underlying paper scores by at most one batch run.

Read the full methodology →

The highest-impact dataset this researcher has shared, ranked by DataRank — the single contribution doing the most to lift their data-sharing standing.

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

Science(2021)10.1126/science.abf7117

Top 4%

5.7DataRank

Top 4%812 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +60 more

Papers

Driven by 21 papers — median percentile 73. Top paper: “Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression”.

Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression

Nature Genetics(2021)10.1038/s41588-021-00913-z

N/A

11.2DataRank · unranked

2226 citations

Annique Claringbould, Harm-Jan Westra, Marc Jan Bonder, Patrick Deelen, Biao Zeng +89 more

Haplotype-resolved diverse human genomes and integrated analysis of structural variation

Science(2021)10.1126/science.abf7117

Top 4%

5.7DataRank

Top 4%812 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +60 more

OTTERS: a powerful TWAS framework leveraging summary-level reference data

Nature Communications(2023)10.1038/s41467-023-36862-w

N/A

1.1DataRank · unranked

56 citations

Geyu Zhou, Luca Pinello, Urmo Võsa, Lude Franke, Alexis Battle +81 more

Complex genetic variation in nearly complete human genomes

Nature(2025)10.1038/s41586-025-09140-6

Top 19%

1.1DataRank

Top 19%83 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

Comprehensive evaluation of smoking exposures and their interactions on DNA methylation

EBioMedicine(2024)10.1016/j.ebiom.2023.104956

Top 24%

0.830DataRank

Top 24%42 citations

Yunsung Lee, Daniel L. McCartney, Elin T.G. Kersten, Christian M. Page, Paige M. Hulls +70 more

Complex genetic variation in nearly complete human genomes

bioRxiv (Cold Spring Harbor Laboratory)(2024)10.1101/2024.09.24.614721

Top 27%

0.741DataRank

Top 27%27 citations

Peter Ebert, Peter A. Audano, Mark Loftus, David Porubsky, Feyza Yilmaz +62 more

Properties of structural variants and short tandem repeats associated with gene expression and complex traits

Nature Communications(2020)10.1038/s41467-020-16482-4

N/A

0.741DataRank · unranked

139 citations

Matteo D’Antonio, Marc Jan Bonder, Craig Smail, Margaret K. R. Donovan, William W. Greenwald +15 more

Assembly of 43 human Y chromosomes reveals extensive complexity and variation

Nature(2023)10.1038/s41586-023-06425-6

N/A

0.721DataRank · unranked

121 citations

Peter Ebert, Mark Loftus, Feyza Yilmaz, Peter A. Audano, Glennis A. Logsdon +27 more

Identification of rare and common regulatory variants in pluripotent cells using population-scale transcriptomics

Nature Genetics(2021)10.1038/s41588-021-00800-7

N/A

0.650DataRank · unranked

75 citations

Craig Smail, Michael J. Gloudemans, Laure Frésard, David Jakubosky, Matteo D’Antonio +22 more

Assembly of 43 diverse human Y chromosomes reveals extensive complexity and variation

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.12.01.518658

Top 37%

0.528DataRank

Top 37%9 citations

Peter Ebert, Mark Loftus, Feyza Yilmaz, Peter A. Audano, Glennis A. Logsdon +27 more

Impact and characterization of serial structural variations across humans and great apes

Nature Communications(2024)10.1038/s41467-024-52027-9

N/A

0.385DataRank · unranked

12 citations

Tobias Rausch, Michael Jendrusch, Hufsah Ashraf, Peter A. Audano, Ola Austine +49 more

A comprehensive catalog of 3D genome organization in diverse human genomes facilitates understanding of the impact of structural variation on chromatin structure

bioRxiv (Cold Spring Harbor Laboratory)(2023)10.1101/2023.05.15.540856

Top 49%

0.360DataRank

Top 49%5 citations

Marc Jan Bonder, Sabriya A. Syed, HGSVC Functional Analysis Working Group, Michael C. Zody, Mark J. P. Chaisson +7 more

Unveiling genetic signatures of immune response in immune-related diseases through single-cell eQTL analysis across diverse conditions

Nature Communications(2025)10.1038/s41467-025-61192-4

N/A

0.337DataRank · unranked

7 citations

Wenchao Li, Qiuyao Zhan, Michelle Aillaud, Javier Botey-Bataller, Martijn Zoodsma +9 more

De novo assembly of 64 haplotype-resolved human genomes of diverse ancestry and integrated analysis of structural variation

bioRxiv (Cold Spring Harbor Laboratory)(2020)10.1101/2020.12.16.423102

Top 53%

0.322DataRank

Top 53%5 citations

Peter A. Audano, Qihui Zhu, Bernardo Rodríguez–Martín, David Porubsky, Marc Jan Bonder +58 more

Long-read sequencing of diagnosis and post-therapy medulloblastoma reveals complex rearrangement patterns and epigenetic signatures

bioRxiv (Cold Spring Harbor Laboratory)(2022)10.1101/2022.02.20.480758

N/A

0.312DataRank · unranked

7 citations

René Snajder, Adrien Léger, Milena Simović, Oliver Stegle, Ewan Birney +4 more

Author response: The single-cell eQTLGen consortium

(2020)10.7554/elife.52155.sa2

N/A

0.241DataRank · unranked

4 citations

DH de Vries, Hilde E. Groot, Gosia Trynka, CC Hon, Marc Jan Bonder +12 more

Genetic architecture and mechanisms of host-microbiome interactions from a multi-cohort analysis of outbred laboratory rats

Nature Communications(2025)10.1038/s41467-025-66105-z

N/A

0.106DataRank · unranked

1 citations

Denghui Chen, Felipe Morillo, Jorge Garcia-Calleja, Apurva S. Chitre, Benjamin B. Johnson +31 more

Structural and transduction patterns of human-specific polymorphic SVA insertions

Mobile DNA(2025)10.1186/s13100-025-00373-w

N/A

0.104DataRank · unranked

1 citations

Mark Loftus, Emily C. Golba, Haley Abel, Hufsah Ashraf, Peter A. Audano +64 more

Long-read sequencing of diagnosis and post-therapy medulloblastoma reveals complex rearrangement patterns and epigenetic signatures

Cell Genomics(2023)10.1016/j.xgen.2023.100281

N/A

0DataRank · unranked

45 citations

René Snajder, Adrien Léger, Milena Simović, Mădălina Giurgiu, Laura Villacorta +8 more

Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats

Nature Communications(2020)10.1038/s41467-020-16481-5

N/A

0DataRank · unranked

37 citations

Erin N. Smith, Matteo D’Antonio, Marc Jan Bonder, William W. Greenwald, Agnieszka D’Antonio‐Chronowska +14 more

An integrative TAD catalog in lymphoblastoid cell lines discloses the functional impact of deletions and insertions in human genomes

Genome Research(2024)10.1101/gr.279419.124

N/A

0DataRank · unranked

2 citations

Marc Jan Bonder, Sabriya A. Syed, Matthew Jensen, HGSVC Functional Analysis Working Group, Mark Gerstein +9 more

Marc Jan Bonder

Indexed papers

Top data-sharing exemplar

Papers